Array 1 96537-95655 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOHB01000002.1 Escherichia coli strain STEC 2359 STEC2359_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96536 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 96475 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 96414 29 96.6 32 ..A.......................... CCGCCGTCGAGTGTAATACCCTGATCCATCGC 96353 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 96292 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 96231 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 96170 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 96109 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 96048 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95987 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95927 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95866 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95805 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95744 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95683 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAGATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115986-114615 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOHB01000002.1 Escherichia coli strain STEC 2359 STEC2359_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115985 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 115924 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 115863 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 115802 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 115741 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 115680 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 115619 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 115558 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 115497 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 115436 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 115375 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 115314 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 115253 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 115192 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 115131 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 115070 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 115009 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 114948 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 114887 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 114826 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 114765 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 114704 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 114643 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //