Array 1 271233-269927 **** Predicted by CRISPRDetect 2.4 *** >NC_010337.2 Heliomicrobium modesticaldum Ice1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 271232 37 100.0 36 ..................................... GGGCTCGCTCGGCGGCCACGAACACCGGGGATTACT 271159 37 100.0 38 ..................................... CGGCGGGAATTTCATCGTGCTCAAGGACGGCAGAATAC 271084 37 100.0 37 ..................................... AACAGCGACTGTGGCATCTCGACCAGAAAATCAACGA 271010 37 100.0 38 ..................................... GGTATCAGATGCTCAGAGACAAGTATGGAATAATCGCG 270935 37 100.0 37 ..................................... ACTGCATGGCAGACCTGAGGGAACTGCCGGGCGCAAC 270861 37 100.0 35 ..................................... ATTCAAGGTAATGATCCGCACGAGTGTCCAAGATC 270789 37 100.0 40 ..................................... TTAGTATCAATAAGTACCTTTCCCTTGGGGTCTTTAATCA 270712 37 100.0 39 ..................................... AAGGATTTCTCAGTCTATCGAGGAGGTATCCTCCAACGC 270636 37 100.0 36 ..................................... AACCGGATCCCTACTAAACAGCGTGAGGGCCGGGGC 270563 37 100.0 37 ..................................... AAGTCTTTGGTCGAGAAGATTAACGCTAAGAGAGAGA 270489 37 100.0 38 ..................................... CCCATGTGCCCACGCAAGCCACGGGAACCTATGCCATC 270414 37 100.0 38 ..................................... TTTAACCCAGAGGGGAAGTGGTGTAATGGCTGACAATG 270339 37 100.0 37 ..................................... GTAAAGCCGAAAAAGGGCTATTCGGTAGCAGATTGAG 270265 37 100.0 38 ..................................... AAAAGCGATCTCCACCACCACTTTCATACTTGCTGTCA 270190 37 100.0 37 ..................................... CCTACGGCAGCAACCGGGGGCTTACCGGGCGGCCGCT 270116 37 100.0 39 ..................................... GGTACAGGGAGGCGGAATGAATGATGGAACGATGGATAA 270040 37 100.0 36 ..................................... GCTCCCGGTTGGGGCCCACCCCTTCTTCCTGTTCAA 269967 37 91.9 0 ..........................A..C......A | A,C,GC [269931,269933,269935] ========== ====== ====== ====== ===================================== ======================================== ================== 18 37 99.6 37 GTTTCACTGGATGACCCGCTATGTAGGGGATTGAAAG # Left flank : CCGATGATCGTGGAGGTGAAGTTCGGTGAGCCCCGCGATTTTCACCGTCTGGCCACCGCCGGGTATGCCCTTGTCATGGAGGCGGTCTATGAGCATCCGGTCGATGTGGGTTGTCTCGTCTGTGTGACCTTTAAAGGGGACCGGGTGATCATACGGCGAGACATCCACCTGATCGATGACGAACTGCGCCAGTGGTTCGTCGAGGCGCGGGATGAGAAGGCCCGCATGGTCTACGAAGAGATCGATCCGGGACTCGCCAAGGATTGCCCGCAGTCTTGCCCCTTTGCCAACCGTTGTTCTTAAAGGAGAAAAATCGGCGATTGTCGAAAGGCCTTCATTGGGGTACAATAAGGGTAGGCTTTTCCAAACTATGGTGTTTTCGCAAAGGGTGGGGGAGTTCGTGCAGAAGTCGGCCTTTCGAAAAAAGTGGCGGTTTTCAGGGAGGTGAAGAGGCTCGGAAGCCTTGATCTTACTGGTTTTTTTCGACTTGACCCCGTGCG # Right flank : TAAGCAAATTCCTAGCCAGCCCTTGCAAAAGCATGATTTTTTAATACAAACAGCAAAAAACTAGAGTCTTTTTATCGGTCTCACCAGCCCTTTTTGAGGATTTTCCTCAAAAAGGGCAGATCTCCCCCTTGCACCTTATGCGGCTTTTTTGAAAGCAACACCGCGTAAGGCGCTCACCTCCAACACCATGGTTGCATTCTTATCATTTCGTAGACGGTTGAGTTTTTGAAAGTTCGCCGCTAACGCGCTGAGCCGGGCGGCATAAGCCAGATTTCGTTTTCCGATACGGCGAACCCGGCGCAGTCCGTAACGGTTGACCAGTTCATTTTGCTTGGCTTCGATGCGGCTGCGAAGACGCATCTGTTCCTTATAGATTTTCGTTTGGGAGTGCTTTGCCGCCTCGAGCATGACACCATAGGCGTTGTGAATAAAAATCGTGCGCCGATGTTTCTTTTCTTTAAAACAGGTCGTGTAACGAGGGCAGTGCTTGCAATCATGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACTGGATGACCCGCTATGTAGGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 603597-602509 **** Predicted by CRISPRDetect 2.4 *** >NC_010337.2 Heliomicrobium modesticaldum Ice1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 603596 29 100.0 33 ............................. TCCTCGTCGAAGGTCGAGAACAAGTCTCGTACC 603534 29 100.0 33 ............................. TCGCAAAGCTAGCGGCCGGGGAAGGAAAGCAGC 603472 29 100.0 34 ............................. CTCGGGAACCGGCGGAACGGTTGTCGGGATAATC 603409 29 100.0 34 ............................. GAGTAGTGGCTTGCCGGCCCATTTACCCTTTGAA 603346 29 100.0 32 ............................. AAGGTCGATGTTGTAGATTTTGGGACTTTCGG 603285 29 96.6 35 .................T........... TAGACTTCAAACCCCGCCTCAGCCCGGTTGTTCGC 603221 29 100.0 32 ............................. ACATCCAGCAACGGCCGATTCACCGGCCCGGC 603160 29 100.0 32 ............................. CTGGAGGGCAAGGAGACGGAAGGGAAGGGTCC 603099 29 100.0 33 ............................. GAAGCCCTCGCCAACCTTGTTCTCAACGGCAAC 603037 29 100.0 32 ............................. CAAGTAGGATTCGACCGAAAGTTTGGACGGGA 602976 29 100.0 34 ............................. TAAAGACAGAATGCTCTGTGGTTAGTGGACTGCC 602913 29 100.0 32 ............................. AGGTTAAACGATCCTTCATGAGGCCCATTTAT 602852 29 100.0 35 ............................. GAAGCGCAAGGATTGACGCCCGAGGTGGAGCAGTA 602788 29 100.0 32 ............................. ATTTGCACTTGACCTCGACAACCTCCTCAAAC 602727 29 100.0 33 ............................. CCTGAAGCGGAACGATACGGTGGGCACTTTGAG 602665 29 100.0 35 ............................. GACATACTGGGCGGCAGACAGGTCACCCCATTCCC 602601 29 100.0 35 ............................. TAAGGCAGCGAGAAACCCCCGTCTTCCCTTATTGG 602537 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================== ================== 18 29 99.6 33 ATGTTCCCCGCGTGCGCGGGGGTGTACCG # Left flank : CAGATCATTGAAAAGAACTGGGAAGTCATCCGCAACGAGTTGGTCAACCGCATGACCAACGGCGGCTTGCCGATGCTGTTTGTGGAAGACGGCGACTACAACCGTGCCGGCGAACTCTTGATCCGCCACGCCTATGAAGGGGTGGAACTGGACATCCCCTACCTGGAGAAGACGCTGCCCTACCTGTTTACGCTCTGGGGCAGGACGGTCTATCTGGAAACGGTGGTGGATGGGAAGCGGATTCAGTTCAGTTACAGTGGGGAGAAGGTGCAGAGGAAGTATTTGTAATCGGGGGAAAAGGGTTAGAAGCTCTTGAGGATTTGCCATCGACGTGAGAGTCGATGGTTTTGTTTTGTGTAAAAATTGGAGGAAATTATCAGCCTTTAACGAATAGATTTGGGAGAAAATCAAGAACTTTATAACAACATAGTGAGGCGGTAGTCCGATACCTGAAAGGGGATTTTCGAGAGGAAGTCGCGTCATTATTAGGTTTTTCTAGT # Right flank : AATCTGATGGCCATGGCCAACCGTGTCTGGATATAATCTTTTTCATTCCCGCAATCAATCTGAGCCAGTCTCATTAGAAAGAAAGGTGGGGTACAGAACCCACGCATCTTTAATAAAAAAGTCTGCTAATCCCCTGTCTGAGGCGCTGTTGGAGAATTGTCATGAAAACGCGACAATTCCCACGGGAAAATGGATGTAATTAGATTAATTTCCAGAAAATTTTAAAGGATTCCCGTTACCTTTGTCGAAGTGAGTGGTTGCAAAGCAAAACACTGAACAAAGGGGGAATCCTCAGTGCAAAGCGTAGCACAGCCACTCGAAGAAGTCCAGAAAATTTTTTGTAGAACACCTGGTGGAAAAAAAGCGGGCCGACTAATTCAACATTTTACGCAGTACGCCTCAAAGGTATATGGCTTTTCGCAGATGGTCCGTCAAGCAAAGGATGGTCGCAAACAACCCCGTATCAAAGCCCCAGCCATTTTTACCGTCGCTTTTTTTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGTGCGCGGGGGTGTACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //