Array 1 43529-44214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMQ01000003.1 Halobacterium hubeiense strain JI20-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43529 30 100.0 34 .............................. CCCACGCTGCGTAATCTCAACGCCCTCCACGTCC 43593 30 100.0 36 .............................. TCCAACCCCTTATGATGATGGCAGTAATCGTGCTCG 43659 30 100.0 35 .............................. CTCACGAGCGAGCTCGGGTTCGAGGACATGCCCGA 43724 30 100.0 37 .............................. GCTTACTTGCGGGTTCATACTGCATTACACCCTTCGG 43791 30 100.0 37 .............................. ATCCGGATGCAGCTCGCCATCGAGGAAGCGCTGTTCG 43858 30 100.0 36 .............................. ACAGTCCGCCGCCCGAACCGCCGCTTGCCGAGCCCG 43924 30 100.0 35 .............................. ACCCGGAGAACAAATCAGCCAATCACTCCAAGTAG 43989 30 100.0 36 .............................. CTTGAATGTCGAAACTGATAGTGTAGCGTTGTAGGT 44055 30 100.0 35 .............................. CCGGCGTAGTAGTCCGGGTGGCACGCATCAGACGA 44120 30 100.0 35 .............................. GAGAACTATACATCGACAGGGGGATGTCCTCGGCG 44185 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 36 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TGCGGTACTCGCCGGACTACGCGAGTTCTGCGACAGCATGAGACGCTATGTGTCTTCGTATTCTTCGAGTGTGACTTGGGAGGCGTCGAGGCCGGCTTTCCGGGGGTCTTGCGAGGAGAACTTCCTCGCTAGCGAAATCCGGGCTTCGTAGCTGAGGACTGCAATTGTGGGGATGGAGAACGCGAGAAGTGGGGTGATCTGTGTTTGGAGAATTAACTCGCCAGCAGCGTATGCGAAGAATGAGTCTGCGACAGACAGCCGCCTGTCAGGCGCGGCACCGACACGAGCGCAAACGAACTCTCCGCAAGACGTACGAGTGATTAGCCACGGAACAGCCTCGTCCCGCTGGCCACACTGACTCGGGAGATCGTATTCCCAGCGACGCGGAGACACGACGATTCTTCATCGACCCCCGGGGGGTTCAGGGACTATTGCGGGTCGACGGAAACACCGAAGTATATCTGGGCTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CACGACGCAACCGTCGATTACGCGCCCGAGACCACCGAGTTACAGCAGAACGCTAGTGCGGTTGAAGCNNNNNNNNNNCTGCGGGCGTCCGAGACTGCTTGATGGGAGGTCCCGCGGACCTCGGCCCACTCGTTACAGCAGAACGCTAGTGCGGTTAAAGCGTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCTGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCGCGGTCGCAGAGACTGGTGATGGCGTCCGCGACAGTTACAGCAGAACGCTAGTGCGGTTGAAGCGGGGAGTTGCGGGCGGCGACCGCGGCCGTCGGCGGTGTTACAGCAGAACGCTAGTGCGGTTGAAGCACCGAGGCGCACCACGGGACGGCGCGCATCCTGGTTACAGCAGAACGCTAGTGCGGTTGAAGCGGCGGTGAGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 44811-45825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMQ01000003.1 Halobacterium hubeiense strain JI20-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 44811 30 100.0 35 .............................. AGAACCTCCAGCGCGAGGATGATACCCCCGCCAGC 44876 30 100.0 38 .............................. CCCGGCGCCGCCAACCCCAGCGTCGGCAGCGTCACGGC 44944 30 93.3 36 .......T.....................T GGTGAGTGGGCATGGCTGGTGGACTTCACGCGGCGG 45010 30 96.7 35 .............................T GATTGGCTCGTCCAGGGTCGGCCGCTCGGAGGTGC 45075 30 100.0 37 .............................. ACGCAAGCACTCTCGCTGGTGTCTGTCATGGTGTCGC 45142 30 100.0 37 .............................. GTCGCCACGGCGCCGTCGCCGTCCGGGTCGGTGAAGC 45209 30 100.0 35 .............................. AACGAGGACCTCGTCGACTGGAGCGTCGAGAAGGA 45274 30 93.3 35 .......T.....................G GAAACGGGCGTAACGGAGCAGAACCTCGACAGCAG 45339 30 100.0 36 .............................. TCGACGACAACGACTAATACCGAGTCTAAAACACTG 45405 30 96.7 33 .......T...................... GGCACCTGGCTCGCCATGGAGTGGACGGGCCGC 45468 30 93.3 35 .......T..................G... CTGAACACCAAGCAGGACCCCGTCGGTGACGTCCT 45533 30 96.7 37 .......T...................... TCCCGCCGCAGGCGTTTACGAGCGCTATCACCTCCGA 45600 30 96.7 35 .......T...................... TGCCCGTACGGCGTGAGCTCTGCTGTCCCAGATGC 45665 30 93.3 35 .......T....T................. AGCACCCACTCCGGCGTCTCCCCGCCGTCGACGGT 45730 30 93.3 36 .......T.................A.... GGGGCGTATCTATCGTGACTGACCCATAGCCCGCAC 45796 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 97.1 36 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : CTTGATGGGAGGTCCCGCGGACCTCGGCCCACTCGTTACAGCAGAACGCTAGTGCGGTTAAAGCGTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCTGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCGCGGTCGCAGAGACTGGTGATGGCGTCCGCGACAGTTACAGCAGAACGCTAGTGCGGTTGAAGCGGGGAGTTGCGGGCGGCGACCGCGGCCGTCGGCGGTGTTACAGCAGAACGCTAGTGCGGTTGAAGCACCGAGGCGCACCACGGGACGGCGCGCATCCTGGTTACAGCAGAACGCTAGTGCGGTTGAAGCGGCGGTGAGGTACTGCACGTACGTCCANNNNNNNNNNGCCGCGTTACAGCAGAACGCTAGTGCGGTTGAAGCCAGATCAAGGAGATGCACGCCGGTGTGCTCGTCACC # Right flank : CGACGCGTCCCGTTGGAACGTCGCCGCGTCCTTCCCACCGTGCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGACGCCCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAAGCCGAGGGGCTTGACCCCGAGGCGGTTCACTGTCTGGGGATGGCGTCGACGCTCGACATCGACCTTGAGCAGGCTGTCGAGAAGAAGCTAGCTGCCAACGAGCAGCGATTCGACGAGGAGGCCGCCGAAGAGATCACCGAGCAGTTGCAGTCGTATCAGCGCTGACTACGCCGTCTCGAGGTCGAGGTCGGACTCGATGTCGTCGAGTGTCTCGATGAGTTCGCGGTTGTACTCGTTGCCGTCCTCGCCGTTGTGGACGCGGCGGTGGCAGGTGGGGCAGAGCGCGATGACCGCATCAGGCTTGTCGGGTCCCTCGTCGCTGACTTCGAAGACGTGGTGGACTTCCAGGTACGGGTCGCCGGTGCGGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 51115-52009 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMQ01000003.1 Halobacterium hubeiense strain JI20-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 51115 30 100.0 35 .............................. TAAGTCGGGCGACACGGCGTCGACGCCTTCGGTAA 51180 30 100.0 37 .............................. ATCGACTGGTACGAGAACAACGCGTATCCCGACCGTG 51247 30 100.0 32 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTG 51309 30 100.0 36 .............................. GATGCATCGCCAGCAGACATTATCTCCGTCGGAGAC 51375 30 100.0 34 .............................. CCGCGCTCGGCCTGAATGCCGGAGATGCCGCGGG 51439 30 100.0 34 .............................. TACGACGACCTCGCAGTCTCCGACACCTATACCG 51503 30 100.0 34 .............................. CGTCTCGCCGTCGGTCAACAGTCCCGAGTGGCTG 51567 30 100.0 37 .............................. TCGAAGACGCATCCGGCGAGCGCGACCGCGACATGGA 51634 30 100.0 37 .............................. CGACGTCGCGCCGGCATCATGCCTCCGGCAGGTGCCA 51701 30 100.0 34 .............................. ACGAACAGCCCGGACACCGACGAACTCGCAGGCT 51765 30 100.0 35 .............................. CATCAGTCGCCGCCGTTGTCTGCGTCCTGCTCGAC 51830 30 100.0 35 .............................. CTCTCTTTGCCAGAAGCCACGCCGAAACTAATACA 51895 30 100.0 55 .............................. CGCAGTAAACCCGACCCCGAACACCCATGGCGGTACGTCTGCAAGGAGTGCCATA 51980 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================= ================== 14 30 100.0 37 GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Left flank : CTACCACGGCCTCGACGCGAAGTTCGAGCGACAGCAGCCGAAGTCGATCCGAACCCGTTCGCCAGTTTGCGCTCGCCGACGCCGACGGCGTCTATCAGGGCTGCGGTGAGAAGGCGCCGTTCGAGACTCCAGCCGGTCGCCCATATCTGGAAGTCCATCACCTCTACCGGCTGAGTGATGGCGGTTTCGACGACCCTGAGAACGTCATCGCGCTATGTCCGAACTGCCACCGCCGCCGTCACGAGGCAAGAACGACGACGAGTTCAACCAGGAACTTATCGAGAAGGGCGAAGAGCGGAACCGCCGAATTCTGTCCGAGTGATTAGCCGTGGAACCCCATCGTACCGCCGCCTACACAGACTAGGGAAATCGGATTTCCAGCAACGCCGGTACTCGCCGTTCTTCATCGACCCCTAGGGGTTCAGGGAGTATTGCGGGTCGACGAAAACACCGAAGTGTGTATGGCTTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CTCTCGACCGAACGCCCACCCGCACGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAGAGTTCCAGCGGCAGCACGAGCGAGCGCGTCGTTACAGTAGAACGCTAGTGGGTTGAAGGGAATGGGTGAACTACACAATCGCCACCGAGCACACGTTACAGCAGAACGCTAGTACGGTTGAAGGTCCAAGATCTCCGGTGGGTTCCGGTCAACGAGACGGTTACAGCAGAACGCTAGTGCGATTGAAGGATTTCCCAGCGGACGCCCAATAATACAACCGCCACCCAGAAAGCCCGCTACTATCGTCAGGACGGCCCAATAGATGCTACAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 4 78381-78085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMQ01000003.1 Halobacterium hubeiense strain JI20-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 78380 30 100.0 35 .............................. CGCGACTACTACAAGGAGGAAGTCCTGAAATTCGC 78315 30 100.0 38 .............................. GTCGGATTGGTCTCGACCTCGACCGCGAACGGCGGCTC 78247 30 100.0 37 .............................. CAGATTGGCGACCCCGTGATGGACGCCGCGCAAGGCC 78180 30 100.0 36 .............................. CCCCGCCAGCGCCATCGCCGCTCCCGTCTCCGGGTA 78114 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 37 GTTACATCAGAACGCTAGTGCGGTTGAAGC # Left flank : TAGAGTGAAAAAGGAGAGTCTAGGAACCTCCTCGGAGCCACGATCTGCTGCTCAGATACCATCCGGAAATTCCCCTGTTGGTCGTCTTCTCTGACCGGTATCGGATCTCTATTTCCGCTCCCCTAACAGTAGTTGAACGGACAGAATTTTATTCAGGAATTGCCCCGTAATTAGGAGTGTGAAGGGCATGTGACGCCGTCCACGCTGAATAAATCAATCGTATTTGCAACAACTGATAATCAAACCCTCCTAACGGAGATTAGATTAGCCGCGGCATCAACACGAGCGCGAATGAACTCTCCGGCGAGGAGCACGAGTGATCAGCCTTGGAACTCCCATCGTACCGGCGTCCATACTGCTCGGGAGATCGTATACCCAACAACGACGATACGCGACGATTCTTCATCGACCCCTAGGGGGTTCAGGGTGAATTACGGGTTGACGAAAACACCGAAGTATGTATGGCCTGTAGCACCGCTGAGTGCCCCGTATGGGGCATG # Right flank : GCACAGTGTGTCGATGGGCGACGCTGGCTGGAGTGTGGACGCGCTACCTACTGCTATCGGATGTTGGAGTTGTCGCCAACCACGATTTGGGAGAGACAACGTGCTGAGGTGTCTGCGACGACGCACTCAACAGGTCGTTTCGTGTGGTTGGCGATGGTCAAGATACTGCTTTGAGGTTACCTAAGGATTTTGATTCGGCAGACCTCTCGTCGGTATTGAATGTGCTCTTGTGCTTCTGCTATCGTGGCCGGTCTTCTAGTTCATCGCTGTCGACACCGGTTTTATAGTAGTCGTCTTCGATTCGGGAATCGCCTCAGAGTCAAGCTCTGAGGCGCTCGGCCTGCGACGCTGATGACTAGACCTTTTCTCAAATTTTAGAATGACGATGTGACGATACGCCAAAACAAATAACGCACACACAATCCAGGGTTGATTCGTCCTATGACAGACCCTAGTGAAGAACACGACAGTCAATCCAACACCGGCTACATCGAACGCTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 89148-97496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMQ01000003.1 Halobacterium hubeiense strain JI20-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 89148 30 100.0 37 .............................. AGACTGACGAAGTCCAGTGGGGGAGCGAGACCGGCGG 89215 30 100.0 34 .............................. TCCCGCGGGACGCCAGCCCGGTCGGCGACCCCCT 89279 30 100.0 34 .............................. AGCGAGCAGGTCCCTGCGGACAAGGTCCGCTGGT 89343 30 100.0 37 .............................. CGTGTCAATCAAGGTTTGTGGGCCGCCCGCCGGCCCC 89410 30 100.0 36 .............................. CTTGAGTCGGAGGGTGAGGAGTTTGAGACGGTGACG 89476 30 100.0 35 .............................. TCGTGCGGTTGGTCGCCGCCCGAACTCGTCGTCTC 89541 30 100.0 36 .............................. TTGGCCCGTGCGTGTACGGGGTCGGGGAGTTTCACG 89607 30 100.0 37 .............................. GGCACGAGTGATATTGATGCGATTGCTGACGACCTTG 89674 30 100.0 37 .............................. GTACAGGAACGACTCGGTGAGGATTTCAATACCGCGC 89741 30 100.0 36 .............................. ATCGACATCGGCTCGAAGGATACGTCGCCGCCGCGG 89807 30 100.0 36 .............................. CATCGGTCGGGTTGTCTGCGCCACGCCCCGGCCCGA 89873 30 100.0 34 .............................. TTCTTTCGCCACTTCGAGGAGGTAGTTCGCGATA 89937 30 100.0 35 .............................. CCACACTCACACACCCACGGGCCACTACTGCCGTA 90002 30 100.0 37 .............................. GGCGAATGGTCCTGTATCAATCCCCACACCATGATAC 90069 30 100.0 39 .............................. TCCTCAAGAGCGATACGGTCGCCAGCGAACCGGTATGGC 90138 30 100.0 35 .............................. CACAAGCGCCGCCGTGACACTCAGAACGAGCACGT 90203 30 100.0 34 .............................. CTCGCTGATGCGGTGGAAGGAACTCTGGCCGGCG 90267 30 100.0 37 .............................. GAGCCGGGGAACTCCGAGACCCTCGCGGAGTTGATGG 90334 30 100.0 36 .............................. AGGACGTACTGACGACGAACCTGCGCACCGTCGAGG 90400 30 100.0 35 .............................. GTCGTGGTTGCGGACCTCATCGGCGCTGATGTCGA 90465 30 100.0 35 .............................. GACTGGTCCGTGAATCAGAACGGCGTCCGCTCCCG 90530 30 100.0 34 .............................. CCGGACAGAGAGCACTCCCCACCGAGGCTCAACA 90594 30 100.0 36 .............................. GGTCCTCGTCGAAGAACACCGCGAACACGGTCACGT 90660 30 100.0 36 .............................. ATCTCGCGGCGGAGATAGCCGACCGACGCGAAGATG 90726 30 100.0 35 .............................. GTCGAGGTCCGTCTCGGTCGCCGCGACGACGGCGC 90791 30 100.0 35 .............................. ATGGTGTGAGGAGAACGGCGGCTATCATCCGATGG 90856 30 100.0 33 .............................. CAGTACCGCGGCAGCGTTGAGATGAATGGCGGG 90919 30 100.0 34 .............................. GCGGCCGCCGCACCGAACTCAAGCACGGCGCCCG 90983 30 100.0 36 .............................. AACATTCGGCTGCCGAACGCTCGCGAGCTCGCCCGC 91049 30 100.0 35 .............................. GGCTGGTGGCAGCGCAGCGGCGAAATCGACCAGAA 91114 30 100.0 36 .............................. GATCTGCCACATCGACGAGGCCTGGGTCGACTGGGA 91180 30 100.0 36 .............................. ACGAGACCATCGAGGTCCAGTCGACTCCAGATACCG 91246 30 100.0 37 .............................. TCAATCACGAGCTCGTCGTCGAGACCGACGCCCTCCG 91313 30 100.0 35 .............................. GAACTACTTGGCGCGAGTGAGGTGGACCGATGAGT 91378 30 100.0 37 .............................. TCTGCCTGCTCCCGCCAGTCAGTATATTCATGCGGCT 91445 30 100.0 33 .............................. CGCTAGGTTCTGCTCGTACCTAGTCCCCGGCAT 91508 30 100.0 36 .............................. GGCGGCCGCCGAACTGGTAGTCGGGCGCGCTCGGTT 91574 30 100.0 35 .............................. CGCGTCCACGGACAGCTCTTGGTCGTCGTCGTAAT 91639 30 100.0 34 .............................. GAGTGCGTCGCGGATGGCGTCCACGTGACTGCGG 91703 30 100.0 34 .............................. CACTCAAGCAGGCGGCCGACGCCACCATGCTTCG 91767 30 100.0 36 .............................. CGTCCGCCGGACGGCTGGCGCATCAAAGACGTCTGC 91833 30 100.0 35 .............................. GCGTTGCCCGACCTGCCTCGGTCCGACCGACGAGC 91898 30 100.0 36 .............................. TTCGGGCCGGCGTACGTGAACGCGCCGGAACCGCCG 91964 30 100.0 35 .............................. CGACCATCCTCAACGGGGTTGTCCGACTCGCCGGA 92029 30 100.0 36 .............................. TTATGGTGAACATGGTTGCCCGCCACCGCGTCAACA 92095 30 100.0 36 .............................. TGCGGGAACTCTAGCGCGTCGTTCAGGCTAGTTACG 92161 30 100.0 37 .............................. AATAACAACAGGCAAACGAAGATCCGAGAATATAACA 92228 30 100.0 35 .............................. TTCAAGAGAATAACGTTACGTATGCCGCATATACG 92293 30 100.0 34 .............................. TGGATAGCCGCAGTCACGCCATTAGTGGTTGCTC 92357 30 100.0 34 .............................. CGCGTAGACGTATCCGAAGACGTGGTTGCGGAGT 92421 30 100.0 33 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTGG 92484 30 100.0 36 .............................. GTTGAGGGTTTGGCAGTGCTGGCAGTGCTGGTAGTC 92550 30 100.0 38 .............................. TCGACGAGCTCGTGCTGGGTGGTCATCGTGAGTCGCTC 92618 30 100.0 35 .............................. GCCCTGGTAGCAGCGGTCAGCTACCCAGCCCGGCC 92683 30 100.0 35 .............................. AGGTTGTGGTTGAGGGGGAACTGCCTGAGGAGTCG 92748 30 100.0 35 .............................. AACGTCGCCTTACAGTCACGGCAAACTACGGTGCC 92813 30 100.0 36 .............................. ACGCTAAACTGCGAGCAGTGTGGCGGCCAAGTCCCC 92879 30 100.0 35 .............................. GAGGGTTGCGGTGTGGCCGTCGCAGTCGGTGACGC 92944 30 100.0 35 .............................. TCGCGGTCCCCCGACGCGACCCCCGACAGGAACGA 93009 30 100.0 38 .............................. AGCTGTGACATCGTCATCGATCGCGCGGGCGGGACCGA 93077 30 100.0 33 .............................. CCAGTCGCCTTCGCCGGAGCCGGTGACGACGGT 93140 30 100.0 37 .............................. TCCCGCAAGAGTCCGACGTCGCGAGCGGCATGACCGA 93207 30 100.0 37 .............................. CTGTTCCTCGCACTCGCGTCGCTGCTCGCGATGATGG 93274 30 100.0 36 .............................. CGCGAACATCGTCTCCGGGCAGGCCGACGAACCGGT 93340 30 100.0 36 .............................. GATAGCTCGCCGTCGACGAACGTCAGGTCATCCTGT 93406 30 100.0 34 .............................. GACCTGCGCAGCGCCGCCCGTATCTCCTGACGAG 93470 30 100.0 34 .............................. GCTGTCCGGAGTGCGGTACGGAGAACGGCTACGT 93534 30 100.0 37 .............................. GCGGTACCGACCCATCGTGAGGTACGGCGCGAGCGCG 93601 30 100.0 35 .............................. CAGTATGGCGAAGAAGACGACGCGCGACCAGCTCT 93666 30 100.0 34 .............................. TCGCGTACGTCTACTCACACGCCGGCATCCGCGA 93730 30 100.0 35 .............................. CTCGCGGTCCAGAAGGCTCAGGGTGACGTCCCCGA 93795 30 100.0 34 .............................. AGAAAGAGAGACGAGGGAGAGAGACGGTCTACGT 93859 30 100.0 35 .............................. GGTCGGCGTCGTCGACGACGTCGAGAGCGGGACCG 93924 30 100.0 36 .............................. GGGGTGAGGTCGCGGAGGTCGACGCGCTCAGTCACC 93990 30 100.0 39 .............................. GCGTGCAAGAACTTGAATGGGTGTTAGACGAATGACCGA 94059 30 100.0 36 .............................. CTGGGCGGCTACATCATTACGGACGGAGACATCGTC 94125 30 100.0 37 .............................. GGCGAGGGGCAGTGGACGATTAAGCCCGGGCTTCTCG 94192 30 100.0 35 .............................. GTCGTGAGTTCGTCCGTGGCGAGCGTCGTGCCGTT 94257 30 100.0 36 .............................. CTTGTACGCCTGGACGAGGGCGAGGTAGTCGCCGAG 94323 30 100.0 36 .............................. TGGCAGAGAGAGAAGAACTTACTAGCCGCTTCCTCG 94389 30 100.0 36 .............................. GACGTTCCCGGCGAGCCGGCGGCGGTCCCCGGCCGC 94455 30 100.0 36 .............................. GGAGACACGTCATACTCGTCGTTCGGGAGGAACGCC 94521 30 100.0 37 .............................. GGCTTGTTCGAGTCAGCACGGAGACGGCGCTTACTGG 94588 30 100.0 37 .............................. AACACGGACGCCGCGGGTAGTGGTTCGACGGGCTACC 94655 30 100.0 35 .............................. GGTACGCGTGTTCGTGCGCGGAGGCGGGGAGTGGG 94720 30 100.0 35 .............................. CCGCAGTGGGATGAGGACGTCGACGGCGTCACGCT 94785 30 100.0 36 .............................. AGACCGACGAAGTCCAGTGGGGCTCGGAGACCGGCG 94851 30 100.0 37 .............................. GCCGCAATCGTCGTATTTGACGCCGCCGAAGCCGGGT 94918 30 100.0 34 .............................. TGCCGTCACGCGCCCCGAGAGTGGCATTCTTAGA 94982 30 100.0 36 .............................. GTACCCCTTTGATGGGATTGTCGTGGAAGCCCCGGA 95048 30 100.0 34 .............................. TAGTCGTGCGTCGCCACCGTCGTTTACGTATAAG 95112 30 100.0 34 .............................. AAAGCCAGCGTGCTTCGGCGATGCAGGCCGCCGG 95176 30 100.0 37 .............................. AAGGGAGTCGTGGGGCAACGATTGACCCGGGAATGCG 95243 30 100.0 36 .............................. CCGAACGGCAGGGGGCCGGTGTGTCGCTCGTGTGAA 95309 30 100.0 35 .............................. CCCGCACGCAGGGCAGTCGTGGATGATTGAGTGCG 95374 30 100.0 37 .............................. CGCGACCCGCGCCCAGAGCTCGTCGTCGCTGGGGTCG 95441 30 100.0 36 .............................. TATCCAGTCGATGTGTTCGATGAATCGCGGGTCTAC 95507 30 100.0 37 .............................. GCGGAACTCACGGGTGAATCCCTATGAGTGGCGTTGA 95574 30 100.0 36 .............................. AGACCATCGGTTATGCAGCTCATGCTACAGATATGT 95640 30 100.0 35 .............................. CACCGGAAAGGGCGGATTCGTTGATGATGAGTGAT 95705 30 100.0 35 .............................. GGCGCAAGCCGTAAGGACGACGGTGAGACGAGTTT 95770 30 100.0 36 .............................. GGATCGCAGCCAGCCGCTGCACACGAATGGCATAGC 95836 30 100.0 34 .............................. ATGCGAGAGCACGCCGTCTCGGCCGTACCAGCGG 95900 30 100.0 35 .............................. CCGGGACGGTTGGCGTGATGAGCATCACGATTTTC 95965 30 100.0 33 .............................. CGCCGGAGGTCGTCGCGGTTCGCGTGAATGCGT 96028 30 100.0 35 .............................. AGGGAGAGGAGTCGCGGGCCGGCGTACGTGCGAGC 96093 30 100.0 36 .............................. TCGATTTCGACGGTCATCGTGCTGGAGAACTCTGCT 96159 30 100.0 35 .............................. GCTTAAGTTTACCGCATACGACCAACTAAAACCAA 96224 30 100.0 35 .............................. GGGAACATCACCGAAGTACGTCTTGTAGGGTTCGA 96289 30 100.0 40 .............................. GGGCACGCCCCCATCGACCTTCGGTCGTGCCGTGCCCGTC 96359 30 100.0 35 .............................. GACATGCCATTCGACCGGGTCTAACACGACGCTGT 96424 30 100.0 35 .............................. AGCGAATGGTACGACGGTGACGCGAAGCCGCTTCG 96489 30 100.0 36 .............................. GAATCGACGGGCGCTTCGGCGGTGGCGTTTCCGGGG 96555 30 100.0 32 .............................. ACAACCAAGAGCCAGAAGCCGACGAAGAGCAG 96617 30 100.0 35 .............................. CCCATGTCCAACGTGCGGAGCTACGAGTCGCTGGA 96682 30 100.0 37 .............................. TTGGAGGGTGTGCCACGCTGGAAGGTTACGGTCTGGG 96749 30 100.0 34 .............................. TCCCGTTGTCCGTGTCAACCTCCCGAGTAATCTC 96813 30 100.0 36 .............................. GAGAACGAAAACCGGGCGGTGATGACTGGCGTCGAC 96879 30 100.0 35 .............................. GTCGAAGAGGTCTTGCTGGTCGACCTCCGACTGGT 96944 30 100.0 35 .............................. TCGATTTGTGACCCGGCCTGTGGGAGCGGCCAGTT 97009 30 100.0 35 .............................. GCGTCGGCCAGCTCGCCGAGCGCGTCGATAGTCGT 97074 30 100.0 37 .............................. GACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAG 97141 30 100.0 36 .............................. GTCGACATTCGATGGTGAACCATCGGTCGGCGCCGG 97207 30 100.0 35 .............................. GCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCG 97272 30 100.0 35 .............................. GCGTCACCGACCGGGATTACATCACCAAGAACCCG 97337 30 100.0 36 .............................. GCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCA 97403 30 100.0 34 .............................. GTGGGGTCGGACTGGAACGCCCACCATCCGGTGC 97467 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 128 30 100.0 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATACCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAAATTGAAGATCTCCTTCAGAAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAGGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGTTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : CAGCGACGGCGGTGACTGGATGACCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCACTCGGCAAACAACGCCGATTATGACTATGACGTGTTTCAGACGTACCCTCGTGGGATTGAAGCGACTTTCTCGGGCGGATGGGGCTCGGGACCGGCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGCGTTTCAGACGTACCCTCGTGGGATTGAAGCGTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGCGTTTCAGACGTACTCTCGTGGGATTGAAGCTTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAGGTTTCAGACGTACCCTCGTGGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 97646-98330 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEMQ01000003.1 Halobacterium hubeiense strain JI20-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 97646 30 100.0 34 .............................. ACTCGGCAAACAACGCCGATTATGACTATGACGT 97710 30 100.0 34 .............................. GACTTTCTCGGGCGGATGGGGCTCGGGACCGGCG 97774 30 100.0 35 .............................. GCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGC 97839 30 100.0 36 .............................. GTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGC 97905 30 96.7 36 .............T................ TTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAG 97971 30 100.0 35 .............................. TTCCAGGTCGTCGACCGGACCACGAGACAGTAGAC 98036 30 100.0 37 .............................. AGCCTGGAGCGCGGCCTGCCGGAGGATGGCGATAGCA 98103 30 100.0 37 .............................. GGGCGATATTGGTCCGTTATTGGTTGATTTTCAGCTG 98170 30 100.0 35 .............................. GGCGGGCTGACGGAGAGTATCCTCGCGACGCTGTT 98235 30 86.7 36 ................T...C.G......G CACGAGCATCCTGCGTGCCCTCGGGGACCTGGCCGT 98301 30 76.7 0 ...A....A.A..G..A...C.G....... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.4 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : AGACGTACCCTCGTGGGATTGAAGCGTCGACATTCGATGGTGAACCATCGGTCGGCGCCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGTCACCGACCGGGATTACATCACCAAGAACCCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCAGTTTCAGACGTACCCTCGTGGGATTGAAGCGTGGGGTCGGACTGGAACGCCCACCATCCGGTGCGTTTCAGACGTACCCTCGTGGGATTGAAGCAGCGACGGCGGTGACTGGATGACCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGG # Right flank : CAGAGATATGGGGAGCCTAGAGAACAGCGGAAGTGATGGGGTTGCTAAAATCAGAGTTGTTTATATGCCATAGTTTCAGAGGAAACAACGGAGGTGGGTGGTCGGTGGGTTTATTGTTCCCTCTGTTCCATGTGGGCCTATATGGCCGACTTCACATTTGAACAAGACACCCAAATCTTCCGGGACCGGGACGCCCTCACGGAAGACTACACCCCAAACACACTCGTCGGCCGCGACGACGAACTGGAAGAATTCCACGCAGCACTCCAACCAGTCATCAACGACGAAAACCCCTCCAACATCTTCCTCTACGGCAAAAGCGGCGTCGGAAAAACAGCCGCCACACGCTATCTACTCACCCAACTCCAAGACGACGTCCAAGAAGTCACCGGCGTTAGCGTCACCGTCGTCGAAGTGAACTGCGACGGTCTCAACACCAGCTATCAGACCGCCATCGAGATCGTCAACCAGCTCCGCCCACATGAAGACCAAATCGCTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //