Array 1 317100-317856 **** Predicted by CRISPRDetect 2.4 *** >NC_009328.1 Geobacillus thermodenitrificans NG80-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 317100 30 100.0 35 .............................. TCAGCTATCTTGCATATTCGTTGAACAGAACAAAA 317165 30 100.0 40 .............................. TGGATTTCGAGGAATTGCGAAACCACTTGATGGAGCTAGG 317235 30 100.0 35 .............................. AATGCGGGACATGTCACGACACCGGAATACTAGAA 317300 30 100.0 36 .............................. CATTTGTCGCCGCTTGATTTGCGTTTTGCGCTGCGG 317366 30 100.0 37 .............................. AGTCGGTTTTATGTACATTGTCGCCACTCCTAACATG 317433 30 96.7 36 ....................A......... CCCCACCTCGCTCCTCGCTACAAATAACGCTCCCGG 317499 30 100.0 35 .............................. TACCAAACAAACCATGCTTTTTTCTCTTCATTGTC 317564 30 100.0 37 .............................. AAAATTTATTAACTGGAAGAACGAAGCGGTTAGCAGA 317631 30 100.0 34 .............................. TCGTCACCCACTCCTTGACGTTTTAGGTAGGCAG 317695 30 100.0 35 .............................. TTACGACGAGTACACATATGACCCGAACGCCGGGG 317760 30 93.3 37 .....................A..G..... CCCTCACCGAGTCCGCGCATTTTTTCTCCTAAACCCC 317827 30 93.3 0 .....................A..G..... | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 98.6 36 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAGACGATCGATAGAAGAAAGAAAACTCATTTTTTCGGGCCGGATGATGAGGTATTTCCCCATCTCATTGAGCTGAATTTTCGCCATAAATATCAAGCGTACTATGGTGTCCCGCCGGTGGAGAGATTGTCAATTCAACCCGTTCATGTCCACCAACGCCATCGCGTTGTGACACTATTCAAAGATATGTATATTACAGGGTGGTTGGGGCATTACCGTCTCTCCTCTTCTCCCGAGCAGTTGACGTTTTTATACCACGTTGGCCTGGGCAGCCGAAATTCCCAAGGGTTCGGCATGTTCTGCCTAACGGGTAAATAATTCGATTCCTCTATTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTTGTTTTTGTCACTTGGCTCCTACAGCTATCACGGGTGAGTGTGATTGACAGAATTTTTTGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGTACTTTTTGG # Right flank : CTTTATCGATTTTGGAGATGGAGCATATCATGTCATCATCAATTTATAAAACACTCTTGCTGTGGTTTTTTATTTTGCGAAAACATCAAATGAAACTTTCGTGGAGAGTGGAATGAAAGAAAGAATTTTATGTTAAAGGATGATGATGTATGAATAATAGAATACAACAATTCTGGAATGATTTTTGTAAGGCAACTGGTCAGGAGGGGATTGAATATAAAGATGCCTTTCAGTTTGGAGCTTTTCCTGATCGGTTGGCTGATTTAGTTGTTAAAGGAAAGAAAACAGCGACAACTTCAGGCTACGTGTTTTATGAGTTAGAAAAAGAACCTATCCCTAAAGCTGGTGAATATTATATTGTTTTGGATGGTCAGGGAGAGCCAGTCGCAGTCATTCAAATTCAATCCGTTGAAATTGTTCCGATGAATGAGGTGACAGAGGAATTTGCTTTAGCGGAAGGCGAAGGAGATTATCGTTCTTGGTGGGATGCACACGAAAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 346707-347136 **** Predicted by CRISPRDetect 2.4 *** >NC_009328.1 Geobacillus thermodenitrificans NG80-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 346707 30 100.0 36 .............................. GGTATTCTAGGCGTAATCGTCGCTGATGGTAAGGCA 346773 30 100.0 37 .............................. GACGAGATGGAACAAAAAGAATCCCGGCAGGTCGACC 346840 30 100.0 37 .............................. TCGTTCAGGACCGCCGCGATTCGGCCGACGGCCACAC 346907 30 100.0 36 .............................. AACGTTGTTTTGTCTTGCAAGTCTTCGATTGTGCAA 346973 30 100.0 38 .............................. TTCGTTACTTTCTAAAGATGAATTGATTCATGCTATTT 347041 30 100.0 36 .............................. AAATGACCTGCGTTTTGATCGGTGTAGGTTTCTGAA 347107 30 93.3 0 ....T............A............ | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 99.0 37 GTTTGTATCGTACCTATGAGGGATTGAAAC # Left flank : CCAACAACGGGACTTGACGAGGCGAGGCAGCGGCGGTCGTTCGGGCTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAACGCCAATTACGAAACGAGGTGAACCAATGGAGACAAAGGAAGCGAAACAAGGAATGGAGTGAATCACCTCGTACGAGCAGCAAGGAATCGAGAAAGGAAAGGTGGACACCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGTGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGACAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGGAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATTCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGGGG # Right flank : CGATACTGTAAGAGTATACAGTTTATCGCCATGCATTGATTGACGAAGTGGTGGCGGAAATCCATCGGTTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCAATATGTACACAAGTTCCAAAACCGGAAAGCATGGAGCTGTTTAACGGCGATGGATGTCAATGAAATCAAAGAACATCTTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCATGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATGCATCATCGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGCGATTTAGTGAAATTCCTTGAAAAAGAAACACAAAAATTTTACTATACGAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //