Array 1 743464-744710 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ344336.1 Klebsiella pneumoniae strain CF127 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 743464 28 100.0 33 ............................ CAGACCTCCTCTTCTACCTTGACCGCCCTACAG 743525 28 100.0 33 ............................ TAAAAACCCCGCATTATGCGGGGTTCTCTTTAT 743586 28 100.0 33 ............................ GAGGAAACGGCAAAACTGGATCAGCTTATCCGC 743647 28 100.0 33 ............................ CGCAGCGCGCCGGGCGATCTCCGGCGTGCCCTC 743708 28 100.0 33 ............................ CAGGTTGGCCATATAGGTCAGGAATGTGCCGCT 743769 28 100.0 33 ............................ TCACCAGGATTACTCGGTCCGGACGGCCAGACA 743830 28 100.0 33 ............................ CCCTACCCCGCGGCGCTGCAGGTAATACGCCTG 743891 28 100.0 33 ............................ CGGGCTTGACGCGGTGCATTTTGACGCGGACGC 743952 28 100.0 33 ............................ TTATGTGTGTGGCGCTGGGGAGGATTGATCCGG 744013 28 100.0 33 ............................ CACCGCGACCGAGGCCGTAAAATCGGCCGTGGG 744074 28 100.0 33 ............................ TGGGATCACCTGCAGGACCTGCGCGTCGTCGCC 744135 28 100.0 33 ............................ TCTGACGGGTCAGAATCTGATGCATCAGTTTTT 744196 28 100.0 33 ............................ ATCCTTCTCGCCTACCGGGCGGAAGCAAAAACG 744257 28 100.0 33 ............................ TGCAGATTTCAGCAGAGTTTCGCCGGGTGTTTC 744318 28 100.0 33 ............................ TGTTGAGCAGCGGGCTGTGTTACTCAACATGCT 744379 28 100.0 33 ............................ CTGGTGCCGGTCGCCACTGCTGCGTGTGATAGT 744440 28 100.0 34 ............................ CATGGTCACGAAGGAGGGGGCCGAGGGAGCAGTG 744502 28 100.0 33 ............................ TTTACAAGGACCGATGAATGAACCCCCTGATCG 744563 28 100.0 33 ............................ CAACTGCGACGCCTGCGAGCATTGCCGCTACTT 744624 27 92.9 33 ........A........-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGA 744684 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 21 28 98.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGCACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGTGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTATGGATTTTTCCGCAGCGTTAACTACGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGGCGCGGGCCGGGGAGGCGAGTAGGGTAGACCGGACCTGGTCAGCAGCAAGACAACGGTGGTGAGATGGGGACATACTTTTTCGTTTGATGAATGTGGTGCTGATGCGGAAACCCTGCGGAGTGCAATTGTCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAACTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATCCATATTCATGTGTTATATTTGTTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCAACTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAACCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGCCATTGTCAGATTGTCGGGGAGATTGCTCGGGCGCTTATAGCGTTGTATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 753379-753840 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ344336.1 Klebsiella pneumoniae strain CF127 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 753379 28 100.0 33 ............................ CTACGGGTCCCCGCTGGGCTCCGGCGGCAGCGT 753440 28 100.0 33 ............................ TAAGCGTTGATGCGGGAGAAGGTGAGCCGGGGA 753501 28 100.0 33 ............................ CGTAAAAGAGCGGATCGGCTCCTCCGTGCTGAT 753562 28 100.0 33 ............................ TGGTGTACGACACCCGCGATTTACCCGTCAGCC 753623 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 753684 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 753745 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTATCAGCGCTGGCATTCGTTCT 753814 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 8 28 98.2 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //