Array 1 80530-80082 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SITM01000033.1 Hafnia alvei strain PCM_1216 591, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     80529	    28	 100.0	    32	............................	AAGCGTAAACAAATCACCAAGGCGATTAACAA	
     80469	    28	 100.0	    32	............................	ATCCTCTGCGGGAGGTATTGGGGCTGGGGAGT	
     80409	    28	 100.0	    32	............................	TTTTTCATCTGGTCTAAATGTTGCCCCCATTT	
     80349	    28	 100.0	    32	............................	TTTCAGCTTCACGCTGGCAAATGAAGAAGGCT	
     80289	    28	 100.0	    32	............................	TGCCGGCTCGATGGGGATCGCGTTGCCGCTGA	
     80229	    28	  96.4	    32	A...........................	GCCGGCGTTGTCCGTTGTTACCGTTGCAGAAC	
     80169	    28	 100.0	    32	............................	CAAAAAAGTATTATAGTTATGTAAGCTTCGCA	
     80109	    28	  92.9	     0	.........................GT.	|                               	
==========	======	======	======	============================	================================	==================
         8	    28	  98.7	    32	GTTCACTGCCGTACAGGCAGCTTAGAAA	                                	       

# Left flank :   GTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGCAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCTTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAAATGAGCTGAAAGCGTTAATCTGTCCCCCCAACTTTCCGGTGTGATCCGAATGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTTCGCCTATTTATACCCCTTTGATTTTTATATAAGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA
# Right flank :  TTTTGCCTCGGTTTCGTATCCGTGGAACAAAACGTTCAAATAAAAAGCTCACAGGGATGACATGAGTAGATTATTGATATTACTATTTTTTATTTCTTCACCAGTCTTTGCTGTCAGCGATATTAACAACGCCACAAAGGCGGCTCTAGAATTCAATAAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAATCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCTGACTTTTTTACTCGTTCACAAGACATTGAGGCTGATTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTCCCACACGGTCATTGACTGTATGGTGAAGGAAAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCAAGCTATCGTGCCAAACG

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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