Array 1 4540-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANU01000023.1 Gordonia sihwensis NBRC 108236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4539 28 100.0 33 ............................ CGGGTTCTTCGAGTAATCCTCCGGCTTGCCGAT 4478 28 100.0 33 ............................ CGGTAACGCCATGATTATGGGCGGTGCGGCACG 4417 28 100.0 34 ............................ GGAGAAGCGATGACCGAGTGCCAGAACTGCGGGG 4355 28 100.0 33 ............................ GCCGTGGCAAGTGTCCATCCTCCGCGCACTCGA 4294 28 100.0 33 ............................ GCGGGTTCCCCGACTGGGTTAAGAAGCTCGCCT 4233 28 100.0 33 ............................ CAGCTTGATGATCTCAGTGATGATCGGGGCGAG 4172 28 100.0 33 ............................ CGCCAAGACTGGTGGGACGCTGATCGACAAGAA 4111 28 100.0 33 ............................ CACGAAGATCAGCATGTTCGGCGGTAAGACGTT 4050 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 3989 28 100.0 33 ............................ CCACGCCGGGATCACGCCTCAAATCGTAGAATC 3928 28 100.0 33 ............................ CGCCGCAGCAACCGCGCGCCGCCGCGAATCCCA 3867 28 100.0 33 ............................ CATCGAATCGAAACCCCGGTAGGCATCGCCTCC 3806 28 100.0 33 ............................ CATCGCACCGTTCCTCGGCGGCAGCGTGGACGA 3745 28 100.0 33 ............................ CGACGTCGCGCGCTGCGACAGAGACGTGAACTG 3684 28 100.0 33 ............................ GGTGCCGAAATACTCGCCACCAGTGCGGATCTT 3623 28 100.0 33 ............................ CCGGGTCGGGATCGGTGTTGCATCCCATCCAGG 3562 28 100.0 33 ............................ CACAGTCTCGAGGACGTTGATGTTGTCATCCTC 3501 28 100.0 33 ............................ TGGGTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 3440 28 100.0 33 ............................ CGCGTCCGGCGACGGCGGTAACGGCGGCGCGGG 3379 28 100.0 33 ............................ CGCCCAGGAGGTCCGCAATAGACCGCGCCAAGG 3318 28 100.0 33 ............................ GCGTTCTTCGGGATCGGTCAGGTCGCAGTTCTC 3257 28 100.0 33 ............................ CCTCGACACCCATCGCCTGCAATAGGTCGTGCA 3196 28 100.0 33 ............................ CGCTTCCCGAACACGCCGGCGATCGACTTCATG 3135 28 100.0 33 ............................ CGATCCACGTTTTCGTCGACGCCGACGATCCGA 3074 28 100.0 33 ............................ TGGTTTGTCGGAGGCGGCGTGGCGTCAGCAGAT 3013 28 100.0 33 ............................ GTCGGCGTATGTGCGGACACGGTGGCCAGCCGA 2952 28 100.0 33 ............................ TCCTGACTGTCGCTGGTCCGGGGTCAAGGTTCG 2891 28 100.0 33 ............................ GGTGATCGGTCAGCACGGACTGCCGCAGACACA 2830 28 100.0 33 ............................ CGCGTTGAGGATCGAACCGAGGCTGCCTACGCC 2769 28 100.0 33 ............................ TCGGAAGCGACCCACCACCCAAGCCCTCGATGA 2708 28 100.0 33 ............................ CATCGCCTCCTGTACCGCGGCTTTGACCCCGGC 2647 28 100.0 33 ............................ CCAACCATTGAACAACCCGGAGATGATGTCCGT 2586 28 100.0 33 ............................ GAACAAGGGCCTGCTGAAGCAGCTGTCGCCCCG 2525 28 100.0 34 ............................ TGAGCGCGCCGGTGATCCTGTCGAGCGTCCTCGA 2463 28 100.0 33 ............................ GACGGGGAACCGTCCGATGCCGACCTATTCCTC 2402 28 100.0 33 ............................ CACGGGCGTGAACGACGTCGTCGTCCGCACCGT 2341 28 100.0 33 ............................ TCTGATCGACAGTATCGAGTCGGGGTGGCGATA 2280 28 100.0 33 ............................ GCAGGTCAGCGATCATCGAGGTCCTCACTTCCA 2219 28 100.0 33 ............................ CTCCCGTTTCCGTCCCGTCGGACATCGACCGGC 2158 28 100.0 33 ............................ CCCAGACCCGGACATCACGACACAGCACCGGTG 2097 28 100.0 33 ............................ TTTGACGGGAACGACCCGCCGTCGCTGATCGCG 2036 28 100.0 33 ............................ CCAAGGTGGGCCCTGCGGCAGTATCTCTCGCTT 1975 28 100.0 33 ............................ CGACAACGTGATCATCCACGGCACGACATCGAC 1914 28 100.0 33 ............................ GGTTGGGTGTTGTAGTGCGCATCGGTCAATTCC 1853 28 100.0 33 ............................ TCCAGCGCACCAGGATGCGCGGCCTCGATCTTC 1792 28 100.0 33 ............................ ACTCCTTCCGGATCACGAACTCATCAGCATGCA 1731 28 100.0 33 ............................ TACGGCGATCCACTGACCAGCCGCAAGCAGTGT 1670 28 100.0 33 ............................ GCAGGCTGGTCCGTATCAGCAGGTGATCGACTC 1609 28 100.0 33 ............................ GCCCCGGTGAGCATCCAACCCAGATACGACGGA 1548 28 100.0 33 ............................ GTTCGATCCGTTCAAGCCGTTCCAGGACCAGTA 1487 28 100.0 33 ............................ TCTCCTCGTCGGAGTCGGGGTTGGTGATGAACC 1426 28 100.0 33 ............................ CGGATACCGGACTGGTAGTTGCCGAGGATCGCA 1365 28 100.0 33 ............................ CACTGGCGCCGACCTGGCGTCGGCTACGTCGGG 1304 28 100.0 33 ............................ CGGCTACGACCACCGCAAGCCGACCGCCAAGGG 1243 28 100.0 33 ............................ CCGTGACAGAACAAGACCAGTAACGACTTTGTC 1182 28 100.0 33 ............................ CCCCGGGAGGCGATGCCTACCGGGGTTCCTTCG 1121 28 100.0 33 ............................ TGTCGCGCGACTCCTTCGGGATGCCCTGCATCT 1060 28 100.0 33 ............................ CTGTACACCGAAGCCGGGTTCGGTCCGCACGGG 999 28 100.0 33 ............................ CTCGGGTCTGGTGTGGACGCGCCCGGCGACCGA 938 28 100.0 33 ............................ CGGCTACGGCACTCACGGTGCGGGCGGTATCGG 877 28 100.0 33 ............................ CACGAGCACGCCGGTCGGCAGTCGTACGCGGTC 816 28 100.0 33 ............................ CATGGGCAGACGGTAGCGCTGGCGGGACCCCGA 755 28 100.0 33 ............................ CCCCGGTGCCGGCATGAGTGCCCCGGTCACCCA 694 28 100.0 33 ............................ GATCCGGACCATCTGCCCGATCCCCGACGCCAG 633 28 100.0 33 ............................ GTTGATGACGAGGCACCCGAAGTCATCCCGGAA 572 28 100.0 33 ............................ CTCGAGTCGCATGCTGAGCGGATCTGCGATCGC 511 28 100.0 33 ............................ CGGCGTCGGGAACGATTCGATCGTCCCGAACGG 450 28 100.0 33 ............................ GGTGTCGTACGTCGACACCTACGTCACCGACGC 389 28 100.0 33 ............................ CACCGGCAGCGGAGTCGTTCTCGACCTCGGTGA 328 28 100.0 33 ............................ TACTGGGGCCGAGTGTTGTCACCAGCCTTCATC 267 28 100.0 33 ............................ GCAGATCGCGGAGAGGAAGCCTGCGCCGTCGAC 206 28 100.0 33 ............................ CTGCGCGATCATCGGGGCAACCTGGCCTCCGAT 145 28 100.0 33 ............................ CAGTGGATGGGTCCGACGAGACGGCTTCGCCGC 84 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 74 28 100.0 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CGCCGGTCCGCCCGACAGGATCAGCGCGGCCGGATTCTTGGCCTTGATCTCTTCCAGCGTCGCGTCGTGCGCGATCACTTCCGAGTAGATGCGGGCCTCGCGAACGCGGCGAGCGATCAGCTGCGCGTACTGGGCTCCGAAGTCGACGACGAGTACGGGACGCGGGTGGTCGGGGGATGTTTCCGTCACGACGTGAAGTCTATCTTGCGCGCGATCGTCGCTGGTGGTCCGGACCAGCCGCGCTCAGTGGCGGTGCACGGGCTCCGACGTCGCATCGATCGCACCGCAGTGCGATCGATGCGTGGATCGACGCGCTCTGAACCAACCTCCTGCTCCGGAAAGCCGTTGCGATGCCTCTGTTAGCTCCCCTGGTTCCGCTCGACGCCGATCAACGATTCGAAACCGAAATGGGGCCGGACACCGTGGGGAATTCGCGATCGCGGTCGGCTAAAGTGATTGAAGAATCGCTTCCCGGCGTGCGAACATGCAGGTCAGGAAGT # Right flank : CCAGCCGCGCACTCTTGTAGGGGTTCATGCAGGTGTGCTCCCCGCGCGAGCGGGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3813-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANU01000022.1 Gordonia sihwensis NBRC 108236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 3812 28 100.0 33 ............................ GTGTCCGCGGCGGTCGACGCGGCTGTCCCGCAG 3751 28 96.4 33 .C.......................... CTCGGCGCGACGCTCGGGTGTCGACGGCTTCTT 3690 28 100.0 33 ............................ CGGCATCGGCGTGATCGACGCCGGATACCGCGG 3629 28 100.0 33 ............................ GCAGCACCAGTGAAGCTGTCGCCATCGGGCCCG 3568 28 100.0 33 ............................ CCCGCATCCACGCCCCGCACCAGGTGATCCCAC 3507 28 100.0 33 ............................ GAACTCGACGTTCGCTGCTCCGTAGAGGAGTTC 3446 28 100.0 34 ............................ CCCCGGCGCTAACCCTGGGTCTAACCCTTGGCCG 3384 28 100.0 33 ............................ CACCGGCACCATCGAAGGCCGCCTCGACAGCAT 3323 28 100.0 33 ............................ GATCATCGACGGTGCCCCGTGGTGGGTGGGCGC 3262 28 100.0 33 ............................ CAGGGCACCGACACCGATGATCGCGTTGCGCTT 3201 28 100.0 33 ............................ CCGGATCGTCTCATTCGGCAGGTACAGCGTCTC 3140 28 100.0 33 ............................ CGGCTTCTCGGTCGCACCGACCCGATCGAACAC 3079 28 100.0 33 ............................ CGAAGTCCGTCCGAGCGCGGGGGCCGTTGCTGT 3018 28 100.0 33 ............................ CGCCGCCTGCGGGTGCAGATGGGGCAGGAACCC 2957 28 100.0 33 ............................ CTCATTCGAATACTGCGGACGAGTGTTGTCACC 2896 28 100.0 33 ............................ CCGCGGTGCCTCGTGGACCTCGATGCGGCGGAA 2835 28 100.0 33 ............................ GTCGAAGTGGTATGAGGCGAATCAGGATCCGAA 2774 28 100.0 33 ............................ CGCATTTCTGACGCGGCCATCTCAGCAACCGAC 2713 28 100.0 33 ............................ GATGATGCAGCCGATGATGTACGTCTTGCCGAC 2652 28 100.0 33 ............................ CTGGCCCGACTGGGTCGCGTCAGCAGCGACCGT 2591 28 100.0 33 ............................ CCCGGAACGCGACATCCTGTTGCCGTTCGCGGT 2530 28 100.0 33 ............................ CGTCAACCTCCTTAACCTCTTGAAGGCGAATCC 2469 28 100.0 33 ............................ CATGAACGCTGCTCTCGGCCGCATCGGCGCGAG 2408 28 100.0 33 ............................ CCCTGTCCGCCAAGGACTACGAGTGCCCAACCT 2347 28 100.0 33 ............................ TAGCTTGCTCGACGGTCGGCATGTCGTAAGACG 2286 28 100.0 33 ............................ CTGTCCAGCGCGTTGAAAGCTGACTCCGACGAT 2225 28 100.0 33 ............................ CATGATCGCCGCGCTCGGTCGTCTCGGCGCTGC 2164 28 100.0 33 ............................ GTCGAGCAGTGTGCGGTCGTCGTCGGTCATGCG 2103 28 100.0 33 ............................ GGTCTTGGCGTACAGCGGCTTTCTCGCGGGGTC 2042 28 100.0 33 ............................ CGGCGCACCACCGCCGCATGAACTTCCGGTCCC 1981 28 100.0 33 ............................ TGCTGCTCCGGGATTCAACCGGACGGTGGGGCT 1920 28 100.0 33 ............................ CCCTTGGCTGCGGACTCCTCGACGAACTCTGCA 1859 28 100.0 33 ............................ CCCGGTCAGCTCGGACGGGGTGATGGTCTCGGT 1798 28 100.0 33 ............................ GTCGTAGTCTTCGACCTCAGTTCGTATCAGCGC 1737 28 100.0 33 ............................ CGTCGAGGTGACGGATGCGACGACCACGTCTGG 1676 28 100.0 33 ............................ TCCTTTGACGTTCCAGTCGATCCTCACACGGAC 1615 28 100.0 33 ............................ TAGCGGGTCGTCCGACAAGACCGCGTGGAGTGC 1554 28 100.0 33 ............................ GCACCACACACCGAACAAGGAGAAGAACTGTGA 1493 28 100.0 33 ............................ GTCACAGCAGATGCTGTAGATGCTGTCCCCGGC 1432 28 100.0 33 ............................ CGATCCAACCGCTCGAGCACCTGGTCGGTACCG 1371 28 100.0 33 ............................ GCCGGCGTTGCTGGTGTCGATGCGGATCAGGAG 1310 28 100.0 33 ............................ CGGGTCGACCAGCTTCTCGATCGCGGACTTCTC 1249 28 100.0 33 ............................ CATCACCGGCGATGTGGCTGGCGGGAATGTGCC 1188 28 100.0 33 ............................ CGTCCCGCCGCCAAGATCACCTTCGGTGACCGG 1127 28 100.0 33 ............................ CCCAGGAGTCGATCGATGCCGCCAAGTCCATGT 1066 28 100.0 33 ............................ CTCGATGGTGATTCCGAGGTCTCGCGCGTGTCG 1005 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 944 28 100.0 33 ............................ GTCGGGATGCACGATCATCTCAACCTCAACCAC 883 28 100.0 33 ............................ CGCGCTGTGTGATGGTCTTGATAACGTTGCTGC 822 28 100.0 33 ............................ CTTCGCACCGCGGGTGATTCTCGGATCGAACGG 761 28 100.0 33 ............................ CGTGTACCCGGGCGATGGGATGCGCTTCAAGGG 700 28 100.0 33 ............................ CTAGCTGCGGCGTTGATCCCGTACGACTCATTG 639 28 100.0 33 ............................ CGTCGCGCCGAGGATGTTCGAGCCCGAGTTGGG 578 28 100.0 41 ............................ GTCGTCCAACTTCTCCATGCGGGTGCTCACGATCTCACTCT 509 28 100.0 33 ............................ CACGGTGCCCTCGAAAAGCCGTAGGCCCTCGCG 448 28 96.4 33 ...............T............ GGCCGAGGACCAGGCACTAGCCGAGCATCGTAA 387 28 100.0 33 ............................ CAACCTCAAGCCGGATTCGGCACTCTATCGGCG 326 28 100.0 33 ............................ TGCGGCTGCAGGCTCTTCGACGATGGGGTCCGC 265 28 100.0 33 ............................ CGCGCCCTGCTCCTTCTTGGTCAGCACGGAGTC 204 28 100.0 33 ............................ CGGCATCTCGCCGATCTCATCGACCTTCGCGTA 143 28 100.0 33 ............................ GACGTGGGCGGACGGTAGTGCTGGCGGCACTCC 82 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 62 28 99.9 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : GGTCCGATGGACCCGTCGTCCATGCCGAGCGCCCTTT # Right flank : CTCCATCGATTCCATCGTCGGACCGTAGAACGTCGTGCTCCCCGCGCGAGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36620-34396 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANU01000021.1 Gordonia sihwensis NBRC 108236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 36619 28 100.0 33 ............................ CAAGGGACAGATGACACCGCTGGTGATGGGGAC 36558 28 100.0 33 ............................ CTCCCGTAGTGCTGCACGTGGATACGGTCCCCG 36497 28 100.0 34 ............................ ATCCGGAAGACCGGAGGCGCGAGCAAACAGCTTC 36435 28 100.0 33 ............................ GGGCCAGGCCCCGGAATGCCCGGGGGCCTGGCC 36374 28 100.0 33 ............................ CGTTGCCCGCGCATCAGTCTGGTGATCTCATCC 36313 28 100.0 33 ............................ TGGGATGCGGACCATGCCAAGTGGGAGAAGTCG 36252 28 100.0 33 ............................ GGCGTACGACGCCAAGATCGCCGCTCTGTCCGC 36191 28 100.0 33 ............................ CTGAAAGCAGTGCCCGCATCCATCGGCTTCGCG 36130 28 100.0 33 ............................ CGGCAGCGTCATAGATATGCCTCCAAATCGTCT 36069 28 100.0 33 ............................ CGGCATGGAGCTGCCCGCCGGGTCATACGTGCT 36008 28 100.0 33 ............................ GTGTGGACCGTGCTGGTCCGCACTACCTCCTAC 35947 28 100.0 32 ............................ TGCTCACGCCCATACAGGGTCTCTGTGGGTCG 35887 28 100.0 33 ............................ GACGAGCGGATCGACACGTCTCGTCCCGATGGT 35826 28 100.0 33 ............................ CTCACCGATCTGCGCCGCCGGCACCCCGGCTTT 35765 28 100.0 33 ............................ CTCCCAGCCGACGTTCGCCAGCCGCGTGCTCGG 35704 28 100.0 33 ............................ CGTCGCCGACGTCGAACTGACAGTCTCACCGAA 35643 28 100.0 33 ............................ CCTCGGTCCTCCCCAGCCGGCCACCGATCCCCG 35582 28 100.0 33 ............................ CTCGGGCTGTCGGTCACGCGGTACTGGCAGAGG 35521 28 100.0 33 ............................ GGTGGCACGCACCGACTGCGGCAGCGGGAACAG 35460 28 100.0 33 ............................ CACGGACGACTGGCAGACATGGTCGACGGGCAA 35399 28 100.0 33 ............................ CTGGGTCGCCGTCGCATTGACGGCAGTCCTCAT 35338 28 100.0 33 ............................ CGCCGCATGATCATGCAACACCGGCCTCCATTC 35277 28 100.0 33 ............................ TGTGTCGTCGGTTGGTACGCCGAAGATCACCAC 35216 28 100.0 33 ............................ TTCGAATCGGCGTGCGCCGCCTGCACCTTCATC 35155 28 100.0 33 ............................ CGGCGTCAGGCGTCGTTCGGTGCGGCGTGGCTT 35094 28 100.0 33 ............................ TTGCCCGCGGTGCCTCCCGACGCGAGCGGCGTC 35033 28 100.0 33 ............................ CGAATCATGAGGTCGATGCGCGCCAACCGCGAG 34972 28 100.0 33 ............................ CCGTGGACGGCCCGCTCGATTGGATCAGACCGG 34911 28 100.0 33 ............................ CAAGCTCGCGCCGACTGCGAGCAAGTACACCGC 34850 28 100.0 33 ............................ CGACAGCATCCGGTGGATCCGGCGGTTCCACCA 34789 28 100.0 33 ............................ CTCCCATGCGTCGGACGTAGACATGTAGGGCTG 34728 28 100.0 33 ............................ CTTCAGCAGCGCTCGCCGAGGTCGGTTCGAGCA 34667 28 100.0 33 ............................ CGCCCCCGGAGGCTTTTCTGGCGTACCTACTGC 34606 28 100.0 33 ............................ CCGCGTCGAGCGATCCTCCGCATCGGCATGTTG 34545 28 96.4 33 .........A.................. CGGGGCCAGGTCACTATCGGTGCGGTCGATCCA 34484 27 96.4 34 ....................-....... CATCTGCAGGTAGTCGTTCTTCTGGACCCCGTGC 34423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 37 28 99.8 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ACCGGCAGGGGAATGTCGTCGGCGGCACCAACTTCGCGCCCGAGGATATGGAACCGCCGTGGTAGTCGTCGTGCTCACGAGTTGCCCGCCGAAGCTGCGCGGTCATCTGACGCGGTGGTTGCTCGAGGTGAGTGCGGGGGTATACGTCGGTCACGTGCCCGCGCGAGTCAGGGACCTCTTGTGGTCGCAGATCATCGAGTACGTGAGCAACGGCAAGGCCATCATGGTGCACAGTTCAGATGGAGAACAACGGCTTGCGTTCAGAACTCACCTCCATGAATGGGAGCCCGTCGACCTGGATGGAATCACCCTGATCCGCCGCCCGACCGACAATGCGACCACGCGCGGCCGCGTCCGCAAAGGATGGAGCACAGCGTCGCAGATGCGGCGGCGTCGACGCGGGTAGACGCACATCAGCGCTCCGCGCGCATTCCGCAGCACGACCGCGCAAAGTGATTCCAGAACAACTTCTCGAGTTACGTAGTCGCTGTTCAAGAAGT # Right flank : CGTCAGAGCGGCACCGTGACGCCACGTCGACTCGGTCGCGAACTCCTCGATGTCCGCCCGACGAGGATGGTCCACCCGCCACCCCACCCGTTTTCGTTCCCGCGCCACGCTCCCGCCCAGCCCGCAATAGGTATCTGTGCCACCCGCCAAATACCCTTGACCCTGTGACGCACCTTTCCTCCGACACCGAAGGCCGCCGCTCGCGCTGGTCGCTGACCATCGCCGACCTGGCTCAGGCCGCCGTCTTCGCCGCGCTCATCGCGGTCCTCGGCCTCCCCGGGCAGATCAATCTCGCAGGCGGAGTCCCGATCACGCTGCAGACGCTCGGCGTGATGCTGGCGGGGGCGGTACTCGGACCGAAGAAGGGCACGCTCGCGGTCGTCATCTTCATGGTGCTGGCCATCGCCGGGCTGCCGATCCTGGCGGGCGGACGCACCGGCATGGTGGCGCTCGGCTCCCCGACCGCAGGCTACTTCGTCGGCTTCCTGCCCGCGGTGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49700-48096 **** Predicted by CRISPRDetect 2.4 *** >NZ_BANU01000021.1 Gordonia sihwensis NBRC 108236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49699 28 100.0 33 ............................ CAAGGGCAAGATCCCTTTCGATAAGCAGATCGG 49638 28 100.0 33 ............................ CCTTTTGCCCGGACCAATCGCCGGAATTCCTCT 49577 28 100.0 33 ............................ CGCCAGGTACAGGCGTTTGCGGATAGCGGGAGT 49516 28 100.0 33 ............................ TCCGTCAGCCATTGCCGCCTCCACAGAGGATGA 49455 28 100.0 33 ............................ ACTCCGGAGCATACGGTGGTCCAGCACCATCGA 49394 28 100.0 25 ............................ GAATGCTTGGGCGGTGGTGCGTATC Deletion [49342] 49341 28 100.0 33 ............................ GCAAGTGATCGATCGCGCCAAGTCCATGATCGG 49280 28 100.0 33 ............................ CTCGTCCCCGCGCCAGGCCACGGCTCCGGATCG 49219 28 100.0 33 ............................ CAGCGCGAAATTCAGGCTGTCGCCGCTCTTGCG 49158 28 100.0 33 ............................ CTTGCGGAGCAGCCACAGCATGGTGGCCTGCTC 49097 28 100.0 33 ............................ CGGCATAGGAAACGGTTTTCGCTGAGTGACTTA 49036 28 100.0 33 ............................ GTTCTCGGAGTGGTGCTTCACCAAGCGGTACGT 48975 28 100.0 33 ............................ CTCTTCTTTGCACTCGACGCACTCGACGTTGGT 48914 28 100.0 33 ............................ GTCCTTGAACGAGACCTTCCCCTTCGACACCAT 48853 28 100.0 33 ............................ CAACCATCCTGTTTAAGCATTACGTCATTACCG 48792 28 100.0 32 ............................ CCCCTGGAAGGAGCCCCATCATGTACCTCGCC 48732 28 100.0 33 ............................ CCGGACGGTGGGGCTCAGTGCGGTAGCGATGCG 48671 28 96.4 33 ..................C......... TCGGAGGCGGTGTGCGCTTCAGCCTTCGCGATG 48610 28 96.4 33 ..T......................... CACGACACAGACATCCGACGCACACGGCCCGAT 48549 28 100.0 33 ............................ CAAGCGCGGCAGCGACGGCGACAACGGCCGCAT 48488 28 100.0 33 ............................ CCCGTTGAGGACCACGAGCGCGACCTGTGTCGG 48427 28 100.0 33 ............................ CACTGCTTCTGCGATGCGCGCATCTCGAGGCTC 48366 28 100.0 33 ............................ CTTCGGAACCACCGTCAAGGCGGCGTATCAAGT 48305 28 100.0 33 ............................ CGGAATCATGATGCTTAACCATGATCAAGCCAT 48244 28 100.0 33 ............................ CTTCGCGTTGCCGATCCAGGTCGGTCCTCGCGG 48183 28 100.0 33 ............................ CGAGACAACGTTCTCGTCTGCAACAACCTGGTC 48122 27 92.9 0 ........-................C.. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 33 GTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : ATGGTCCCTCGGGAGGCTCGAATGTTGGCTCCTCGAAAA # Right flank : GGCCTGCGCCGGGTCGGTCTCTATCAGGTCATCGATCTCTGCCTCGATCGACGCGAGCGTCACCCACGGCGACGAGATGTAGACCTCCTCGAGGATCTTCCGTCGGTAACCAAGCTCTGCCGTACGTGCCGGAGGGTGTGAGTGTCGAGTACCTCGAGCTCCGCAAGGATTGTCGTTCGCGTCGGTGTCCGCGCATCACGGATCGCCTGCGCGCCGGCCTTCGTGAACAGCCGATCCTGCTGCGCGCGCGAGAGCCCGTCGAAATGCACGCGGGCATCGAGGGCGGATCACGAAGGCCGAAGCCGAGGCGATCCGAAACTCACGCGGAGGACGAGCTCGGGCGCGGTCGGTGATGCCGGATGCGATCTATCGGGCCGCGGGCGGCGATCGCGACCTTGCGGTGGAACTGCTGCATCAGCACGGGTACATGATGGACCGGCCAGGCAGGTCTCGCACCGTTCGCGGTGGCGCGGAAATGACTCGACCGAAGGCAGCGCGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //