Array 1 179732-179432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NESU01000002.1 Helicobacter sp. TUL H.caesarodunum_S15_Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 179731 36 100.0 30 .................................... TTTGCGTATCCGCATATAGAGCTTAATGTT 179665 36 100.0 30 .................................... CCCATCGCTTAATACACTTTTTGGAAATAA 179599 36 100.0 30 .................................... TATGGAATTTCACGCCTTAGCTTTCCATTT 179533 36 100.0 30 .................................... CTTATGGGCTTATAAAGCTTCTTAAAATCA 179467 36 83.3 0 .....................TT.......C.C.TA | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTTGAGCATAAGACCCGATTCGAGGGGATTAAAAC # Left flank : ACAATAGTGGCAAAGTAGCCTTTGTGGGCGATGGCATAAACGATGCTCCAACACTTGCCCTAGCAGATGTGGGTATAGCAATGGGTAGTGGTAGTGATATAAGTATTCAAAATGCTGATGTCATCATCACAAACAATTCCCTAAAAACCCTCCTCCAAAGCATACAAATTGCCAAAAAAACAAAAATCATCATCTACCAAAATATCGCCCTCGCACTTGGGATAAAGGCTGTGTTTATTGTTTTGGGATTATGTGGGTTTGCGACCATTTGGGAAGCGATTTTTGGTGATGTGGGCGTAGCACTTTTGGCTTTGGCAAACGCTATGCGATGTATGCGTATATAAATACAGATAGTAGAGTTTGCAAAAATATAATTTGCCATATTATTTTGTATATTTTTGCTATAATGCTTGTTTTATTACAAACTTTAGATGTTCTTTGAAATAGCTTGATTGTCGCAATATGTGGGATTTTGGGTGTCGATTCTCATTTTTGACCCT # Right flank : TAGAAATGACAACCTTAATCTATTCATTGCAAAAAGGCTTATCTTTGCAAAAATCTTAAGAAGCATTAACTCTCATGTAGTTTTTTAACTTTTTGTATATATGTTTGTTTTAGTTTTGCATCTCAAAAATTTTAGATATATTTTGTGGATTTTTTGCTATAATCTCGCCTTTTTAAGTTTTTACAAAAGGATTGCAAATGTTAGAAGGTATCATTAGAGAGAGTATTTCTAAAGCAGCAGCAAAGGCTTTGCGAAACGATGGTTATCTAATTGCCAATATCTATGGAAAAGGACAAGAAAATATCCATTGTGCGTTTAAACTCAATGATTTCATAAAAGAAATTAAGAGTAAGACAAACTTGATTTTTGAAGTGAAAGTCGGTGGGAAAAGTTATAATGTCGTTGTCCAAGAATATCAAAAAGATCCTGTTACAGATATCCTCAAGCACGTGGATTTGTTATTGGCTCAAAAAGGTGTAGCGAGTAAATTTAAAGTTCCA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGCATAAGACCCGATTCGAGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 31339-33812 **** Predicted by CRISPRDetect 2.4 *** >NZ_NESU01000007.1 Helicobacter sp. TUL H.caesarodunum_S15_Contig07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 31339 36 100.0 30 .................................... GCAAAAGGCGTTTCTGGTGGTCCTCATCGT 31405 36 100.0 30 .................................... ATTCGACGACTGGGAATGCTGGATATCTCA 31471 36 100.0 30 .................................... ACATGTGATGAGCTTGACCCCAAACCATTA 31537 36 100.0 30 .................................... GTTTAGTGAGGTGTTAAAATGACTGGTGCA 31603 36 100.0 30 .................................... CACAAAAGGAATTCGCGCAAAACTCAATTC 31669 36 100.0 30 .................................... TTACGCGTCCTGTTTTAGGGGAGTGTGTCA 31735 36 100.0 30 .................................... GCCCCGACTTTTGTTAATGGTGCTATTAAA 31801 36 100.0 31 .................................... ATCAAAGTTGGTGATTTTTCTGGCTTTCTCG 31868 36 100.0 30 .................................... AGTGATACCAGCACCGCCTAAAATTGCACC 31934 36 100.0 30 .................................... CCACTGCGCGCCCGTTTACACAAAGAGGCG 32000 36 100.0 30 .................................... TGTGGGAAGTGTTAAATGAAGTGTTTCTAT 32066 36 100.0 30 .................................... TATGGGTAACTCCCCTGGCTATACTCCTTC 32132 36 100.0 29 .................................... CTCGATATAAGCGTAGAGGTGGTCGTAGG 32197 36 100.0 30 .................................... GGTAGGTGATGCATGCATTTTTTTAAAATT 32263 36 100.0 30 .................................... CTTTTCCATGTCATTTTCCGTAATGGTAGG 32329 36 100.0 30 .................................... TTCTGAAAAAGCATTTTATCGTCCGTTCGC 32395 36 100.0 30 .................................... GGAGTAAGATTCGATGGCGACTTTGAAGGA 32461 36 100.0 30 .................................... GTCTCGCTTAGACTTTTTCACACCGGAATT 32527 36 100.0 30 .................................... AGTAATCGCAGCACTGCCAAGAATTGCACC 32593 36 100.0 29 .................................... TTAAAGCAGCACCGAGTAAATTACTACCT 32658 36 100.0 30 .................................... CGTTAGTGACGTTACCCCAGAAACCGAGGT 32724 36 100.0 30 .................................... GGATACAGCGACCGATATCAAGAGTATAGA 32790 36 100.0 30 .................................... CAAGTTCCATTTTTTACAAATGTCCTTCAA 32856 36 100.0 30 .................................... AACAAACCAGTATTGAGTGAAAAACTTCAC 32922 36 100.0 29 .................................... CAGATACGGAACGATTTACAGATTTTGAG 32987 36 100.0 30 .................................... AGTTCTGGCATGATTTCACAAGACGACTAT 33053 36 100.0 29 .................................... CAAGGTGCAGAATTAACCACCACTGAAGA 33118 36 100.0 30 .................................... AATTTTTCACACTAGCAAACGCTTCTTTGA 33184 36 100.0 29 .................................... CCACGATTGACCAAATGATAGGCGACGGC 33249 36 100.0 29 .................................... TAGATGAGGCAATACACAAAAATTGTAGA 33314 36 100.0 30 .................................... CACATTAACAATCATAGAAACCTCCGATTT 33380 36 100.0 30 .................................... AATGCTCCCTATTTCTTATGGTAGCGGTGC 33446 36 100.0 30 .................................... CATCATTAAGAACTGATGAGAAGTCTGAGA 33512 36 100.0 30 .................................... AATACTGGTTCGTCCCTAATCGCATTATTT 33578 36 100.0 31 .................................... TTAGAGAAAACAATTTTAGAATTACAAAAAG 33645 36 100.0 30 .................................... TGTAAAATTCAAAACTCTGATATGTGGGAA 33711 36 100.0 30 .................................... AAACTTATTGAAACGCAGTATAATTCATCT 33777 36 91.7 0 .................................GGG | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 99.8 30 ATTTTATCATAAAAAGATTCAGAAAGGGACTAAAAC # Left flank : TTTTTTATGATCCAATTTAGTGTATATATGCGAATCTGCAAAGGCGTTGCCTCTGCCAAGTCTTCTATCAATAATATTAGGAAATTTGTGCCGCCAAAGGGAAATGTGCGGTGTATCACAATTACAGAAAAGCAGTTTGATGCTATGGAAATTTTACTTGGTGGTGTGAGTTTCAATGAAGAGATGAATACCCAAAAAAATCTGACACTTTTTAGTTTTGATGAAAAAACTGGAGATTATGTATATTTGAATGATACAAAACAAGATACACAAAATATATCAACACATAAAAAGAAGACATCAAGCAAAACTATCTATAAAAAAAGTTTATTTGAGTTGTATTGAGACACGATAGAACATCAGGAGTTTAAAAGAGGTGTCAGTCTAAAGGGATTTTCGAGCACTCATAGAGCCTCACCCTGCGCCGACTGACAAGCTTATTTTAGTCCCTTTTTGAATCTTTTGTAGTATTGTAGCATAAGATTCTCATTTTTGAACCT # Right flank : GATACGCGATTGGGAGGAAGATAGATTAGCCAAGATGATAAGCTCCATAATTCCAATAAAATCCTAACACCATACAGGAAGGTATGATTTTCTTGTTGGATTTCTTTTAGTATTTCACACTCCGCCATATCACCACTATCATATGCTTCGTCAAGAAGCGTGTAGCCTTGATCATTAAATGCTTATAAAGCTTTTTGTATGTCCTCATTAGCAAATATTATGCTTAAAGTCATAAACCCCAAAATAAAAAGCATAAAAAGTATTTCATCTCTATTCTTTTTAGTCAATACCTTTAGACATTGTATCACAATCCATTTTTGCACCAAATAACGCATATTTGTTATAAAAGATAGGGGATAAAATGGTTATTTTTGTATGTCTCTTAGCATTTTACATTCTCTTTTTAATCCATTATTACAGGCTTTTTCAATAAATTGTATTGCTTTGAGATAATCTTTTTCTACACCCTCTCCTTTGTAATACATATCTCCAAGAACCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATAAAAAGATTCAGAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //