Array 1 979875-981184 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OU015342.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171 chromosome C1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
979875 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG
979936 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
979997 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
980058 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
980119 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
980180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
980241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
980302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
980363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC
980424 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA
980485 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
980546 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
980607 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
980669 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA
980730 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG
980791 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
980852 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA
980913 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
980974 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
981035 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
981096 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
981157 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================= ==================
22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.16
# Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 997316-999280 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OU015342.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171 chromosome C1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
997316 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA
997377 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG
997438 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
997499 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC
997560 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG
997621 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
997682 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
997744 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
997805 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA
997866 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
997927 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
997988 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
998049 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
998110 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
998171 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
998232 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
998293 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
998354 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
998415 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
998476 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
998537 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
998599 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
998702 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
998763 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
998824 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
998885 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA
998946 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT
999007 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
999068 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
999129 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
999190 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
999251 29 96.6 0 A............................ | A [999277]
========== ====== ====== ====== ============================= ========================================================================== ==================
32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.15
# Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//