Array 1 632553-635859 **** Predicted by CRISPRDetect 2.4 *** >NC_008818.1 Hyperthermus butylicus DSM 5456, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================= ================== 632553 25 100.0 37 ......................... GCAATCCAGCAGATGGCCCAGCAATTCCAGCAGCAGC 632615 25 100.0 45 ......................... TACGCATAAAGAAAGCACTAGCAGAACATCTTGAAGCATTTGCAG 632685 25 100.0 45 ......................... GGTACAGCCTTGCGAAGTTTTCCTCGGTCGCCAGGGCCTTTTCGA 632755 25 100.0 44 ......................... GCGATGGGCATCCCTGTGCAGATTGGCGCCAAGCCAATCAGCAT 632824 25 100.0 44 ......................... CCCTTGGCTCCTCGGGAGGCGAGTGCTGCTTCCTGCACAGCTCG 632893 25 100.0 44 ......................... ATGTATTCAACGAGGCCAAACTCCTCAGCCTTCTTTACTTCTCT 632962 25 100.0 43 ......................... CCTACCATGGCGGCCTCCACCCCACCCCAAACATTGTAGCTAT 633030 25 92.0 41 .......................GA CCTCTCAAGCATTGACACGCCATGACCCGCAAGCGCCATTG 633096 25 100.0 40 ......................... TCCATGATGACACCCAGTTATCGTTCACCAACACCACTAG 633161 25 100.0 55 ......................... CGCTCACACGGTCGAGACCACGCTCTCCTCGATCCACGACACAAGGAGGCGACTC 633241 25 100.0 48 ......................... TCGTCGCTCACCTATCTCTCCATCACGATACGCAATCGCCACGTCTAT 633314 25 100.0 45 ......................... GCATATGCAGTATGGTAGGCCTTCCTTGTCCCATTTCTCCAGCTC 633384 25 100.0 42 ......................... TCCAAGAGCTCTACTTGCCGTCTCTTCAACTCTAGATATTCT 633451 25 100.0 45 ......................... TCTCCGTGAGACGCTTCTCAAGCTCCTCAGGGTCAACGGTTTTCT 633521 25 100.0 40 ......................... AACTCGCTGGCCATCTCCAATAGCTGCTTGATCTTTTGGA 633586 25 100.0 42 ......................... TCCCAACAGCGTAGCCGTACCTTCTCGCGTGGTCTATGAAGT 633653 25 100.0 45 ......................... TACATCATATCCTACTTCTCTACTCTCACAGTACTCTTCACATTT 633723 25 100.0 38 ......................... TCTCCGCCTGCTCGGCGGCCTGCTCTAGCGCCGCTATG 633786 25 100.0 41 ......................... CTCATTGCCAAGTCTTGCTTGCTGAACGTGAACTGCTTCGC 633852 25 100.0 40 ......................... TCAATGCTGCTGATGTTGCCGATGCTTGGCGTCGGCACAA 633917 25 100.0 41 ......................... CCTTGTTTGCAGACTCGACGAACGTCGCGAACACAATCGTG 633983 25 100.0 45 ......................... GTGAGTACGCAGACACCAAGGCCGCCAAGGTTTCACCCCACGTGT 634053 25 100.0 40 ......................... TTTCTGGAATCAGGACTCTAAGTCTCCTTTCCCAAACAAA 634118 25 100.0 41 ......................... TGGGAGCGCACGGGGGGTCTGCGCACACTTTACCAATTCAA 634184 25 100.0 46 ......................... ACGAAGACGCTGTACGAGCTGCCGCCACCAGGCAACTACACACCAA 634255 25 100.0 42 ......................... CGTCATTGTACTCTTTTCGCTCAATTATTATTATGTCGTCGG 634322 25 100.0 40 ......................... GTGTTAGTAGTTCTCTCATGGTTTTCAGTGTGTTTACAGC 634387 25 100.0 41 ......................... ATCCGAACTGTGCCAGTTCACATTCCATCATTTTTATAGAG 634453 25 100.0 46 ......................... TCTGCTGGATTGCGGGGACATGCGGCGCGAGCTCCCTCAGCATCTT 634524 25 100.0 39 ......................... TCCGTTCGTCCTCAGAGCGAACAGCTTCCTTGCGTACGC 634588 25 100.0 41 ......................... TGGACTGACTTCGATTACAAGCAGCACTACGACAATCTCGA 634654 25 100.0 45 ......................... GTTCTAGCTGCTGACCCCGACAGCCTCGTCGCTGAGCTTAACCGT 634724 25 100.0 38 ......................... CTGTATGTTTGCCGCAACATATCGCTATCACCTTGGGC 634787 25 100.0 45 ......................... AGGCATCATCGGCGCGTCAAGGATCACTCCAGCACAGCTCTCCGA 634857 25 100.0 44 ......................... ACACCTCCACGCGGTCCGGTGCAGCCTCCACTTCCCTTTACAAT 634926 25 100.0 46 ......................... GGCCGCGTAGACCATGTAGCCTACTGCTAGCGCTACGGCTGGGTAC 634997 25 100.0 45 ......................... GTTTTTACTCTGCCAGGTGTTAACCTCGAATTCAACTCTCATCTT 635067 25 100.0 43 ......................... TTATCGCAGCTTGTTTCCTCTTCTTCCGTTTCCTCCTCCGCTT 635135 25 100.0 53 ......................... GCGGTCGCAACCCCATGCGCGTCGTAGTGGGCTATAATGAGGTCCTGGACAGC 635213 25 100.0 43 ......................... TTTAAATCCGGTTTTCTTTCAATTCCACTTCTGGGTTAAAAAA 635281 25 100.0 46 ......................... TATACTTGTTATATCTCACCCTGATGTCTAGCATTCTTCCACCTCG 635352 25 100.0 44 ......................... CTGGGGACCTGTGTCTGGAAACCTCGCTATTATCGCCCCGCCAA 635421 25 100.0 45 ......................... ACACCATTTGCAACAATGAGGATGGTGGTTACTAGCGATAGGGAT 635491 25 100.0 44 ......................... TTGATTATTGCCATGACTGTGAAGGCTAGCTGGCCAACGGCATG 635560 25 100.0 43 ......................... CGCAGGCTCAGGCGTGGCACGGCATAGAAAACACTTATACTAG 635628 25 100.0 46 ......................... TAGAACAATATATACGGCTCCGTGCCGTCCTTTGGCACCCTCAGCT 635699 25 100.0 46 ......................... ACGAACGCTTTGTTGACAGAGACCGGTGGGGAGACTGCGGCAACGA 635770 25 92.0 40 ...T....T................ CTACATGTCTTACACTCGTAAGACAGCACGTAATACATGT 635835 25 88.0 0 ...T.................T..T | ========== ====== ====== ====== ========================= ======================================================= ================== 49 25 99.4 43 GAACAACTCAAAAGAGAATTGCAAG # Left flank : GACGCTGCATAGCAACCCTAGTACTCGAAAACATCTACAAAACACCCTACCCCGACAGCAGAGGCCGAAAGAAGACACTAAGAGACCACATATACACCTACGCCTGGAACCTAGCAGCCGCAATAAGACAACACAAACCCTACAAACCCTTCATAGTAGGACGTCTCTAACCGGTTCAACTGTTTTTTACAACGCGCATCCTACAGCTAGTTGTTTTGTCCCACTATGTTCTCCTATCCTGTGTTGTGGGTGTCCATTGCTGTCAGAGTTTCTTGCAATTCTATATATGTCTTCTTGCGAACATACACGTGGCGGAACTGCAAGTGTTCTTGCATTGCTCCATGCAAACCCATACAAATCCATGAGAACACATTCCAACCCCAAATCCATAGCCACAAGTACGCCCCCAGGAAACCAAAAGAAATAAAACAGCCACAAAACCGGGAGAAAAACCCGGACCCCCCAACTCAACAGAGAAACCCCAACACCCCCACAGTGCA # Right flank : TGTCTCAAGGCTTGTTGCGGTTTTGGCTAGAATGGTAGTCAAGGATAGATCTTGTGCTGCCAGAAGTCCTCCTTATCCCTGGCTTCTTCTGGTTCCTCGAGGGCTAGGTGGAGTAGTTCGTTGGGGTGCCCGGCTATGAGGCGGTTGAGCGTCTACATCCTTACCTGTAGGGTGAGCGGCGAGGGAACTGTGTGGTGGCGCTGTACCGTGTGGGGGAGCTTCCGGGGGATGTGTCTTGGAACTCGCGTATTATGATCGTATCTTCTCTGTGTTGTTGCAGAATGGCTTCTAGGTTGTTCGATGGCCTACAGCAGCTGGTGCGCCTACTACGCCTATGTAGCCTCCCCTCACCGCGTAGCTAGCCATGACGGCGGCGTGGTCCGCGTAGTAGGGGAGCCTGGCCCGGTACTCCCGCGGCAATGGTAGCTCCTCGGCGGTCTTCCGGTCGGTGCGCAGGTAGATCTTCGTGTTCGCAAGAGTGGCTATGAGCGGGGAGAGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACAACTCAAAAGAGAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: F [matched GAACAACTCAAAAGAGAATTGCAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 705557-702374 **** Predicted by CRISPRDetect 2.4 *** >NC_008818.1 Hyperthermus butylicus DSM 5456, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 705556 25 100.0 39 ......................... GCAGCTCTCCACGTTGCAGAGTTTAAACTTCAGCTTGCT 705492 25 100.0 41 ......................... CAAGGGCTTTAACGCCCCTCCATTTGTTGCCAACCTTCTTC 705426 25 100.0 49 ......................... TCATTGAAGACTATGTAGAACTGCTGCATCGTTGTGCACTCATGGTCTT 705352 25 100.0 41 ......................... TGGACGCCTCGTCCTTGCTGCTGTAGCGCAGCGAGATGTAG 705286 25 100.0 41 ......................... CGAACGGTATGCTTGTCTCGTGGTGGTCTACGTGGAATATC 705220 25 100.0 38 ......................... GCTCAGTGTCTTTATCGCTGCATCGGGGTTTCTAACGT 705157 25 100.0 47 ......................... CCTCCAGAGCCTGGCTGGCGGGTAGTCTGTCTCGTTTCTCAGGGTCT 705085 25 100.0 43 ......................... GTTTGCATTCCATCATGAATATGCCGTTGTATTCGATGACTAT 705017 25 100.0 46 ......................... CCTCTATGTAGCTCTCTCCTGTTGTGTACTCAATGAATGATGTGAA 704946 25 100.0 43 ......................... TGTATTGATCTGAAACTCGACCCTTACCATCCCTCTCACCGGT 704878 25 100.0 42 ......................... CGCTGGGCTCCCATTTGACCGCTATGCGGGTGAACGGGCTCT 704811 25 100.0 40 ......................... CAAGCGCATGATGAGCCACCTCATGCAGGTCTTTTTTCAA 704746 25 100.0 44 ......................... ATCTATCAAGATGCTGATACTACCTTCTTCTATGATTCTACTAA 704677 25 100.0 46 ......................... TGTATCGTCTCCTGCATCTCCCTCAGCCGCTCCTCGAACATCCTCT 704606 25 100.0 48 ......................... CCTTGATATAGGGCTCTATCCTGCCGATAGACTTGTCTATGCATACTG 704533 25 100.0 47 ......................... GGACAAGAAGCAAGCGGCCAGGCTCTTCGCGTTCCTCGAAGCTGTAT 704461 25 100.0 43 ......................... GATTCGATTTTGCGATCTCGACGACGCCACCGCCAGCGAGCGA 704393 25 100.0 44 ......................... GCATCTCAGTCTTCACATAGTTGATACTGCCGAACAGGACGAAG 704324 25 100.0 45 ......................... GGTCCAACTGGTTCACTCCGTTGTAGTAGTACTTCCAGCGTGCCA 704254 25 100.0 44 ......................... GCGAAAGCGTTATTGCCACCACCGCCTTGCGCGCCTACAATCAA 704185 25 100.0 47 ......................... TCCTGGGGCCGAGGCGTAGCAGGAGCCGGTAGATGCGGTGATGCTTG 704113 25 100.0 46 ......................... TGTTCTTTTGTTGATCGCAGCTCCCAATGATTGTGATTTGATTAAT 704042 25 100.0 45 ......................... ACGTACAATGAATGCGTGATTTTGGGGGAAAACCGAGCCATGTGA 703972 25 100.0 39 ......................... TAAAGGCATATCTCAGCAATGTAACGCTCTCCGAGGAGG 703908 25 100.0 42 ......................... ACTCTTCGCCCTCCTAGTCCTCGACGACCCATAGCACCACGC 703841 25 100.0 45 ......................... ATTTCTTCCATCACAATCAACGTTTTCCTCACTGCCACCTCTCTT 703771 25 100.0 40 ......................... ACATCTGCATGCCGATCACCTCACTTCACAATCTCCACCA 703706 25 100.0 42 ......................... GCTGCCATTGCTGTAGCAGTACTGAACATCATCGGTATAATG 703639 25 100.0 53 ......................... ATCCCCTCCTGGTGCTAGGCAGTCGGGTTTAAGCAGTAGGTCACCGTACCTGG 703561 25 100.0 43 ......................... ATATCAATAGTTGGTGGTAGGTCGTTGAGGTAGCGCAGGTTTG 703493 25 100.0 42 ......................... TCAACGGCTTCGCACTCCTCTAGCAGCTGCTCTATCTCATCT 703426 25 100.0 43 ......................... ATATCAATAGTTGGTGGTAGGTCGTTGAGGTAGCGCAGGTTTG 703358 25 100.0 42 ......................... TCAACGGCTTCGCACTCCTCTAGCAGCTGCTCTATCTCATCT 703291 25 100.0 38 ......................... ATACGAATTTACATTTTCTACTCATACCTCTCACCTCC 703228 25 100.0 47 ......................... CACCACAGCACTCCATGTGGGTGCCGAAGACCCTAGAGCAACTGCTG 703156 25 100.0 42 ......................... TTCTAATGCCCTGGCCCCTGAGCCTACGGGAGGAGGACATAG 703089 25 100.0 39 ......................... ACTAGTCGTAAAGAGGAAGGTAAGCAGGGAGGAGTGGAT 703025 25 100.0 45 ......................... TCTTTATACCTGCCAGGGCCTCACCGCCCAGCAGCCTCTCCACCT 702955 25 100.0 48 ......................... TCTTTCGGTATGCAGAGTTGCACTATTACTTGCTGCCTTGTCACCACT 702882 25 100.0 44 ......................... AGAAGTGAGCAGGTGGGAGAACCTTCCCACCAAACGGCAAAAAT 702813 25 100.0 45 ......................... ACAATCATGTACCGTAGTTTTCCTCGACGCCCGTACCTCACTCGT 702743 25 100.0 45 ......................... GCGTTTGGCTACGAGGGCGGCAGCACGATAACCATGTTCGCCAGG 702673 25 100.0 47 ......................... ATGACACCTATTGCTATTGCCTCCAGCGGGTCGTCCTTATCCTCCCT 702601 25 100.0 43 ......................... TCTCCTTCGACAATTCATACTCTATGATCTGCAGCAGGCGCTC 702533 25 100.0 39 ......................... ATGTTTTTCTTATAGCGATTTCTCTTTTGACATAGCCTA 702469 25 100.0 46 ......................... AACGGAGGCACTAGGATAGAGGTCCGTGCCGAGTCCTGGAGCGGGC 702398 25 96.0 0 .....................T... | ========== ====== ====== ====== ========================= ===================================================== ================== 47 25 99.9 44 GAACAACTCAAAAGAGAATTGCAAG # Left flank : CATAGCACGCCTACGCAAGAAACCATAACCCAACACCCCATGATGAACTGATGGGCCCCAGACCCCCACAGAAAGGGGGGCATGAAGAAATCCTTGGGCACTGAACCCCCACAACACACCCACCACAGCAATCCCACCCACAAAACACACCACCAACCCAACACATAGCAAACCTGTTCCAGAACCCTTTACAACGCGCATCCTACAGCTAGTTGTTTTGTCCCACTATGTTCTCCTATCCTGTGTTGTGGGTGTCCATTGCTGTCAGAGTTTCTTGCAATTCTATATATGTCTTCTTGCGAACATACACGTGGCGGAACTGCAAGTGTTCTTGCATTGCTCCATGCAAACCCATACAAATCCATGAGAACACATTCCAACCCCAAATCCATAGCCACAAGTACGCCCCCAGGAAACCAAAAGAAATAAAACAGCCACAAAACCGGGAGAAAACCCGGACCCCCAACTCAACAGAGAAACCCCAACACCCCCACAGTGCA # Right flank : AGCTTTGGCATATAGATATGGCATCTGACTGGGAGGAACCATTGCTTGCCATTGCTACTTAATGTTAGGAAGTGTCGGCGATAGAATTATGTCGTTTAGGTAATCCCTGGCTAACTTGTCGAGCTTACGGCATAGCCTGGTAGCTAGGATCGTAGGCTTGTGGTTGTGCAGGTATGCTAGTAAGCGCTCTGGTATGGCCTTGGCGGGTGGCTCCTGGCGTAGTTGACCAGTAATCTTAGAAGCTGTTCTCGATGGTGGAGCAGGGGGTTGTTCCTCCCGCTATTCGTCCCGGTTGTCCTCGTAATACTTCCGGGGCCTCCTTCTCGAATTCTTTTTAGCTCGTGCACTAGGATACGCGTCCATGTTTACGTAGACTTCACTGTTCTCTGGGCCGAGCCTTCTGTAAGCAATAGCATTCATTGGTTTTGAAGCCTTCTTGCCCATGGGCATTCTGATAAACACTCGGACGGCGATAGAGTAGTTAGAGGATTCTCTCAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACAACTCAAAAGAGAATTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: R [matched GAACAACTCAAAAGAGAATTGCAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //