Array 1 613246-613437 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VTRT01000003.1 Pedobacter sp. BS3 BS3-1_scaffold3, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ======================================= ====================================== ==================
613246 39 100.0 38 ....................................... ATTGGATGAGCACGGAATGAATAGATGGGGGGTTGTGA
613323 39 100.0 37 ....................................... TCTTTTTTGTACGACCATGCAAATTGACCTGTTGTGA
613399 39 100.0 0 ....................................... |
========== ====== ====== ====== ======================================= ====================================== ==================
3 39 100.0 38 ATTGCTTTCGCCCTTTGAAATTCTGATATTTAGAGCAAC
# Left flank : ACACGGTAATGCCGGGTTACTTTATCAGCGACTTAGGTGATATGATGCGCACTTACCTGTCGCCGGCCAATGAGGAAGAAAAGGATTTCAGCAAAATCAGCGTGCGGGTTGAGTTCTTTAAAGCCATTATTGAGGGATATTATACCCAGTTAGCCCATTCGCTTACCGCCGAAGAAAAAGACCTGTTTGTTTATGCCGGCAAATTCATCATTTATATGCAGGCTATCCGTTTCCTTACCGATTACCTCAATAATGATATTTATTACGGAGAAGCCTATCCCGGCCATAACCTGGTAAGGGCGCAAAACCAGTTTGTATTGCTCAACAAATACATCGAAGCAGAACTGCAGTTTCAGGAAATTGTTCTGGGTTTCAGGGATGATGTTAAAATAGGATGATTAAAGCGAGAGTTGAGCAAAGTAAAATCCTAACCATTCACATTGGTGTCGGGTTAATATTGGTATAAGTCAGTGATACTAACGCCGACCAAGTTGTTTATT
# Right flank : CTAAGGCGACTTTGCTTATTGACTGATATATTGAAAAAATCAAATTATTAATTAAAATATAAATTTTATGAAAAATTTAATTTACACTTCCATTCTATTACTATTATTAAGCTCTTGTACAGTTAAGCAAATGGCAAGTTCTATAATAACTGTTGATTATCGCCCTTATTCTCAATCTGGATTCTTTATAACAGAATCAAATAGTGTGAACTTTGAATATACGCCATTGTCTAATGTCCAGAGCTATATATCAACTGGCTATGAGAAAGAAAAGGGTGACGAAATACCTAAAAAAGAAATTGATAATGTTTATGGGAATAGATATGAAGGCAAAATAAAGGTTATTTCAGCAACAGCACAAAAGGCAGTTGATTTATTAGTTGATAATGCTAAATCACAGGGTGCTAATGCAATCATAAATTTAAAAATAACCCCTATTTATAGCACTTCAAGTGGATTTAGTTTTATCCAAGGCTATTCAGCCTCTGGCATGGCGATAA
# Questionable array : NO Score: 2.67
# Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : ATTGCTTTCGCCCTTTGAAATTCTGATATTTAGAGCAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:64.10%AT]
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [0.37,0.27 Confidence: LOW]
# Array family : NA
//
Array 1 13197-5223 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VTRT01000009.1 Pedobacter sp. BS3 BS3-1_scaffold9, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================== ======================================= ==================
13196 30 100.0 36 .............................. TTGTCAGATAGCTTATTACCGTTAATACGGTACACT
13130 30 100.0 35 .............................. AATGGCAGTTATATCGAGTTTTTTTCAGCAGACCA
13065 30 100.0 37 .............................. ATTCCGACTGCTGTTTCTTTCTTAATTGGCTTTTGTT
12998 30 100.0 37 .............................. TTTTTAAACTGATTGGTATATTTCCAAACCCTGTCTG
12931 30 100.0 35 .............................. CCAGTTAAAGCACATTTGTAATTTTGTTTTTCTAT
12866 30 100.0 37 .............................. TAGGACATGTTAAGTTTTAAGTGCAAATCCCTTACGG
12799 30 100.0 36 .............................. GACTATAGATGGGTATGTACTAAAAGTTCAATACGG
12733 30 100.0 35 .............................. GGTTATGGCTTATATGCGTGTAAATAGCCGTTGTT
12668 30 100.0 34 .............................. TTTGGTGTTGCTGTGTATCTTAAAAAGAATTTCA
12604 30 100.0 36 .............................. GAGCTTAAATCGGTACTATATCCCCGTGAAATAGTC
12538 30 100.0 36 .............................. TCGGAGGTGTTACCGGTTAAATCGGAGGGTTTTGAA
12472 30 100.0 36 .............................. TTTGTACCGGATTTGGTCTAATACCCCGGCGCAGGA
12406 30 100.0 35 .............................. TTAATTGTTTCATGATGTAAATATACACATTGTCT
12341 30 100.0 35 .............................. TGAGTTTGAAGCCAATAAAGATAAATTGATGTATG
12276 30 100.0 38 .............................. TTGTACAATTGGAGTACATCATTGCCTGTAGATGTTTT
12208 30 100.0 36 .............................. GGGCGTTGCAGACAGGCAACTTGTAACAACATGCGT
12142 30 100.0 36 .............................. TGAGATGATGACGGTAGGGCTTAAAAAAACATTTTT
12076 30 100.0 37 .............................. ATAAATCGGGCATGCTTGAACAAATGGACTATCCCGG
12009 30 100.0 37 .............................. TCTTCAGGATAGACAACTATCTGATGTTCTGTTGAAT
11942 30 100.0 34 .............................. TAGCCCGTGACTTAGGTCTGCAAGATAACAAGAA
11878 30 100.0 35 .............................. TGTATAGCGTTTTTTCAAACCCGTTAAGCAATTGA
11813 30 100.0 36 .............................. ATTTTGAGGGCAGCGTTAGCCTTTCCCCCTGTTTCT
11747 30 100.0 34 .............................. AAATAATATGGCAGCAAAAAGAAAGTATGCAAGA
11683 30 100.0 35 .............................. AATTGAACATCGAGCCGCATAGCATTGTCGGGTTT
11618 30 100.0 36 .............................. GCAACTGGCAGGTAATTAATGAATTGCCTAAGGATG
11552 30 100.0 36 .............................. TAGCGTTAATAATATCTTTTCGGCATTGGTCTGCAT
11486 30 100.0 39 .............................. GTGTAGTTTCTGAAAGCGTGCCACACCTTCGCAAAGGCG
11417 30 100.0 34 .............................. TAGGGATATAGGGTCGCAAGATTGGCGGCGTTTA
11353 30 100.0 35 .............................. AACAAAAACCGATTAAGAAAGAAACAGCAGTCGGA
11288 30 100.0 36 .............................. TCGTCCACCTGCATAGCGAAACCAAGACTAAAAGCC
11222 30 100.0 36 .............................. TAAATATCTGCCTGATTATGATTATACCATATACAT
11156 30 100.0 36 .............................. TTATATGCCTGCTGGATGAACTTCGTAAATGCATCA
11090 30 100.0 38 .............................. GGGAATGGCAATCCCAATTCTTTTTTTATCTGCCTTGT
11022 30 100.0 35 .............................. AGACTTATCATTTAGTAGCTTTTAAAAGCTCTTTA
10957 30 100.0 36 .............................. TTGTTACCACATTTAGGACAAATATGTTCGGTCATA
10891 30 100.0 37 .............................. TAGTTATAGTCGTTTTCTTCCGGTTCAGGTAAATGAG
10824 30 100.0 35 .............................. GCGCATCAATGCGTGCCAGGTATGTTTGATTGCCA
10759 30 100.0 34 .............................. TTTGACAAAGTCGCTAAAATGTTTGAACATTTTG
10695 30 100.0 38 .............................. TAACTATTTTATATACTTGCTGTGTATCGTTGTTGTTA
10627 30 100.0 34 .............................. ATGAAAGACTTTATCTGTCTGTTGGCGTAAATGG
10563 30 100.0 36 .............................. TTGTTGAAATAGTTTTTAATTGCGTTTTGTGGCTTT
10497 30 100.0 37 .............................. CAAACATTCCCCGCCATTAACGCATAACCGATATGAG
10430 30 100.0 35 .............................. TATTTAGGGTGATTTGCAGATAACTTCACCTCATA
10365 30 100.0 34 .............................. TTTGTCACATCTCTGGTTAACCTAAGTGCGTTTT
10301 30 100.0 35 .............................. AACTTACCGTGAAGCATCAAACATACCGATATACG
10236 30 100.0 35 .............................. TCAACTGGCTTATGGATATTAGACAGGCTGATGTA
10171 30 100.0 36 .............................. CGAGTTCTACCGTACAGGTTTGGCACAGGTATTTAT
10105 30 100.0 35 .............................. TGGAAGATAAAGATGATATAAAGGAGCGATTGAAG
10040 30 100.0 36 .............................. TTGTTATCAGCTCTTGTACTGGTCAGCCATTCTCTA
9974 30 100.0 34 .............................. CGGCCTTTAATTGCAATGCGGGGTGTAGCAGTGG
9910 30 100.0 37 .............................. TTTCCTCTTGCATATTGAAATACCCTTGCACTACCAT
9843 30 100.0 36 .............................. GCTAAAATTGAAATGTTAGCAACAATCCTTTTCGGA
9777 30 100.0 36 .............................. TCTTTTCGTATTTCCGTTGTCCATTCCTGAACTTTA
9711 30 100.0 35 .............................. GTATGCGGGAATTTCCCTGCAGGTTACCCTCAATA
9646 30 100.0 36 .............................. TCAGGTATTGGGTAAGAAACGACTGAACGCAGGGCT
9580 30 100.0 35 .............................. TTTAATAGGGTGATTAAATCTTTTTGTTCGATTAT
9515 30 100.0 36 .............................. TCCTTTGATTGCGGTGGTGTAGGTGGAGTTGGCGCC
9449 30 100.0 36 .............................. GGGTCTGTTTTATTTCTGCGAAAATAGCAAGTTGTA
9383 30 100.0 34 .............................. ATGTGATAATTGAGTACAAAGCCAAGTGGCACGG
9319 30 100.0 36 .............................. TAAAATGGGAGCAGGAAACCAACCCATCGCTTGCGT
9253 30 100.0 37 .............................. AAGCCGACAAAATTTAATTGATACTTGTTTGCACTTA
9186 30 100.0 37 .............................. TGTGCTCCCGGGATTCAGTCGGTTGAGCTGGGGGAAT
9119 30 100.0 34 .............................. GCTTTAAAGCCAGTCAAAAACCACTCTTTGTTAT
9055 30 100.0 37 .............................. ATAATCTACCAACACTTAATAGCTATAAAGCGCATGG
8988 30 100.0 34 .............................. AAGCATGCAGCATCTGCCTTTTTAGACCGGTGAA
8924 30 100.0 34 .............................. GTATAAAAAAACACGGAATGTTTTACTTAAACGC
8860 30 100.0 37 .............................. GAGGTTTACCTTATGGACTGCGTTCAAGGTATGAAAC
8793 30 100.0 36 .............................. ACTATTCCATTCTGTGGAACAGAAAAAGACTGCCTA
8727 30 100.0 34 .............................. ATTTGTAATCCATAGATGCGGGGGGATGAATCGA
8663 30 100.0 36 .............................. TTATGCCACCCGTTTAATACATATTCCCGGCTGTGG
8597 30 100.0 36 .............................. AGGTATGAAACACTACCCTGATAAATGGTTTGATTT
8531 30 100.0 35 .............................. GCTGTATAGTTTCATTAGAATTTAAGTTATCGGGA
8466 30 100.0 37 .............................. TAGCCTACCACATACCACTCTACATACTCCGCATGGC
8399 30 100.0 36 .............................. ACGAGAAAGGCGGCTATAAACCCAGGTTAGAAAGCC
8333 30 100.0 36 .............................. GGGAGAAACCAAAATCATTAAAAGCTTTATCCCCTG
8267 30 100.0 36 .............................. GGAAAACGATAAAGCCCCTTATTTGAGGGGCTTTAG
8201 30 100.0 36 .............................. TTTCTTCCCAATAAGAAGTATGATTTCCTTACGCTT
8135 30 100.0 35 .............................. AGGTTTGATACGGAGTTGTTCAATTTATTTCCATC
8070 30 100.0 34 .............................. TCTTGCAGGAATGTTGGCGGCCTCCACAGGTTTA
8006 30 100.0 36 .............................. GTTCCTGTATTTTCGGATGTAGTTTCATTGGTATTA
7940 30 100.0 34 .............................. GCAAGTATGTATTACATCCGGCGAAGCCATCAGG
7876 30 100.0 35 .............................. ATACTTAGTGCCCCTTCTTCGCCTTCTTCATAAAT
7811 30 100.0 34 .............................. GGACTTGTTAAATGATAAAGTCCTGCGTGATTAT
7747 30 100.0 35 .............................. GCGTTTTTATACCAGTCTATATGTTGCTTCATGCA
7682 30 100.0 37 .............................. ATAAGCGGTATGTCAGGAAGCTGACCAAGACCAAATT
7615 30 100.0 36 .............................. TCGTATTCTTCCTGTAAAACAAGCCTTATCGGGTTA
7549 30 100.0 36 .............................. GCAGACAGATGAGGAAATAATTAAGCTCAATCAAAA
7483 30 100.0 34 .............................. AGCTCTGCCCGTATGTCTTTTGACTTTTTAATCA
7419 30 100.0 34 .............................. TGCATCAGCTTGACGGCCGGTATATCAACTTTGA
7355 30 100.0 35 .............................. TAAAGCACAGCGACGACAGAACAGAGGTTGTTAAA
7290 30 100.0 36 .............................. GAATATATAGGTTCGACAAGAGATAGTTCTGATGGG
7224 30 100.0 37 .............................. GACCAGACCACAGATGCAGCTAAATAGTAGTAAACAG
7157 30 100.0 35 .............................. GCTAGTTTTTTGTCCAATCCATCCAGGGAATTAAT
7092 30 100.0 35 .............................. ATAGCATAAGTAAAGCCGCCTAACCGCTCTATACG
7027 30 100.0 36 .............................. GGTGAAAAAAATGCAGCGGTAATTAGTAAAAGTTTG
6961 30 100.0 37 .............................. GGAGTTAGTTTTGACGGGACTGCTAATATTACATTAA
6894 30 100.0 36 .............................. AATCTTCCAATCTCAATGTAGTTGCCGCCTTTCTCA
6828 30 100.0 36 .............................. TCAATTGTTGTAGATTCGTTAATAGCGTTTATGGTA
6762 30 100.0 37 .............................. GGAGTTAGTTTTGACGGGACTGCTAATATTACATTAA
6695 30 100.0 36 .............................. AATCTTCCAATCTCAATGTAGTTGCCGCCTTTCTCA
6629 30 100.0 36 .............................. TCAATTGTTGTAGATTCGTTAATAGCGTTTATGGTA
6563 30 100.0 37 .............................. GGAGTTAGTTTTGACGGGACTGCTAATATTACATTAA
6496 30 100.0 36 .............................. AATCTTCCAATCTCAATGTAGTTGCCGCCTTTCTCA
6430 30 100.0 36 .............................. TCAATTGTTGTAGATTCGTTAATAGCGTTTATGGTA
6364 30 100.0 36 .............................. TGTACCTCGCCTTTTACTTTGGCGATGCCATCATTT
6298 30 100.0 34 .............................. ACAGTTATAATCGCCCATAACCATCCATCTGGCA
6234 30 100.0 36 .............................. ATTACCAGGATTTGTTGATGATGTCTTGGAAGGCAC
6168 30 100.0 35 .............................. TTGTGTATCTGCGCATAGGGCACGTCTGTACCTAC
6103 30 100.0 34 .............................. TGATGAATTTACCCACAAATGGCACATCGTGCCG
6039 30 100.0 36 .............................. GCCCAGGACGTGTTACAACTGGATGATAAAGATTTA
5973 30 100.0 35 .............................. ACCGATGTGCGGAAACTTTCTTTTTTCTCGTTATC
5908 30 100.0 35 .............................. TTACAATTTCGGGGCTGGCCCCGGCTGCAAATGCC
5843 30 100.0 35 .............................. TGGGGGCGGTCATAGAGTTGTCTACAGCTTCGTAA
5778 30 100.0 34 .............................. CTACAAAAGTACAACAAAACCAGCGAAATGTTTA
5714 30 100.0 35 .............................. TTGGGGTCTCCATCATTACCCCAATCCCATTTTTT
5649 30 100.0 36 .............................. ACGTTAATAATGAGGTGCTGGCAGGTACGCAGGCAG
5583 30 100.0 36 .............................. TTTCGTTTACATCGGCAATGTTGTTAATGGTGCGTA
5517 30 100.0 36 .............................. AACTGCATGTGCATGTGTTTGAAGTATATCAGGCAT
5451 30 100.0 37 .............................. TCGTGTTTATCCAGAAATTCGGCGGTTTCCCGCATAT
5384 30 100.0 35 .............................. TAAATAGGCAGGCCGTCTATCACAGAACCGCCCCC
5319 30 100.0 37 .............................. TTAACACAACTCAAACAATCATTATCATGGAATTGAA
5252 30 100.0 0 .............................. |
========== ====== ====== ====== ============================== ======================================= ==================
122 30 100.0 36 CTCTTAATCGCACAATAGTTGAATTGAAAT
# Left flank : GTATAAACCTTTTAAAAGCTGGTGGTAATATGTATGTAATTGTGGTATATGATATAGGCGAAAAAAGAGTGGGAAAAATGCTTAAATTGTGTAGGCAATACCTTAACTGGATACAGAACAGTGTGTTTGAAGGAGAAATAACCGAAGTAAAGTTAAAAGAACTATTACATCGGGCCAGAGAGGTTATGGATGAAGCATGTGACAGTATTATTGTTTTTAAGAACAGGAATGAGAAATGGTTGGAAAAACAGCTTGTAGGTAAAGAGAAAAATGAACTGGATACTTTTATTTAGTTGTCGATGCTGAAACAATGAAGCCAAGGAAAGTTCTTTGACATACTGGTAAAATAAAAAAATCTTTGCAGGCAAGCAATATAATCGGTTGTCGATGTCCGGGGTAAATCATATTATCGGATATCGACAACTTTTTCTGGTAAAAATGTTTAATTTTGAAACTCTAAAGCCTTGAAAATAGGCTTTTTATCGTTGTCAATATGACGG
# Right flank : TTTCGACCTAAAAGGAAATAGGACTTTTGTACGTTACTCTTAATCGTAATAGCATTGGCATTTATGCTTTAACTTGCGGTGGTTTTAATCCCGGATGGTTGGTCTGTCGCTTTGCTCAACTTTTGATTTTTTAATTTTTAATTTTGACTTTTTAAGATGAAGAAGCTTCTTTTATTCTTTCTATTATCTGTTGTTACAGGAAGCATTTATGCACAGACAGACTCATTGGCGTTTACACAGGCAAAGTGGAACACCAGCCGCATTAAGCACGGTGTAAAACTAAAGCAATGTCAATTTGAAAATAACCTGTTTGGTAGTAACCAGTTCATCAGCATTCTCGAAATAAAAAATAAGAATAAGCAGTTTTCAATAGGCTTTGAGCATAAAGCATTACGACGTACCAGTGATTTTGCGGCATCGGCCAATGCCCTGGCTGCCATAAATGGAACATTTTTTGATGTGAAGAATGGCGGTTCGGCCGATTTCATTAAAGTAAACGG
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : CTCTTAATCGCACAATAGTTGAATTGAAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT]
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,4.5 Confidence: HIGH]
# Array family : NA
//