Array 1 2066878-2070198 **** Predicted by CRISPRDetect 2.4 *** >NC_022600.1 Gloeobacter kilaueensis JS1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 2066878 37 100.0 35 ..................................... TTATCCCCCTGGGCGGACAGTAAGGCCGTCTGGGA 2066950 37 100.0 37 ..................................... AGTGACTTCAGTAAAATAACGGTAGGGAGTATCGTTA 2067024 37 100.0 36 ..................................... CATTGATCGGAGGTAATCGCTTCCCGGTATACCAGC 2067097 37 100.0 36 ..................................... AGGATGCTCCCAGACGTTAGCGCCTATTTCCAATCT 2067170 37 100.0 34 ..................................... ACGTAGCCAAATCTTAATCCTTCAAAATCAACGA 2067241 37 100.0 33 ..................................... ACCAGCCCGGATCGACAGCATATCGCCTACCAG 2067311 37 100.0 36 ..................................... GAGAACTGATTCGGCTGCTTTGAGACGAGTTTTCAT 2067384 37 100.0 34 ..................................... GACAGGAATACTGCGGTGTATCGGCTGCGGGAGC 2067455 37 100.0 35 ..................................... TTGTCTTTTAATGTGACCGGATCGCGGGAATAAAA 2067527 37 100.0 35 ..................................... CCCGTAAAAAAATCAACTTGCGTATCGTCGTACAG 2067599 37 100.0 40 ..................................... TCGTAGGCCAAGCCCTGGCCCATGCTGCGGCTGCGGCGCT 2067676 37 100.0 34 ..................................... CCGGTAAACAAACCACCCCGCCCGCCAACCGCAC 2067747 37 100.0 36 ..................................... CGCAGCGTCAGCGCGGACAATAGATTGTCTTTTCTC 2067820 37 100.0 37 ..................................... AACCAACGGTTACGGGCAGCAGCGCTAAGGCCAGGGT 2067894 37 100.0 38 ..................................... GTAGTAGCTGCGGATCAACCGCCCTTGATAGGGAAGAA 2067969 37 100.0 35 ..................................... CGTTGGCCCCAGCACGCCTGGTTTCTTGGCAGACG 2068041 37 100.0 34 ..................................... GTAAAGCTTGAGCACGCCAGCTACGGCAGACAGG 2068112 37 100.0 36 ..................................... CAGCGGCAGCTTTGCCGGTGGCGGTTTCTTTAATAG 2068185 37 100.0 35 ..................................... GCGCAGCGGGCCGTAGATAAACTGCTCTTCGAGGC 2068257 37 100.0 55 ..................................... CAGGTTCACGCTAAAGCACCGATCGCGGCGGTCGCCGCCGTGGCAAATCGGGCAC 2068349 37 100.0 37 ..................................... GGGGGCATCGAACATTTCGTGCAGCGCCCAGAGCGCG 2068423 37 100.0 35 ..................................... ACGATCAACCCCGCCGAAGAATGGCTACCTGTACC 2068495 37 100.0 35 ..................................... TGCAGGTCGGCGGTAATTGGCATCAGCGCAACCAG 2068567 37 100.0 33 ..................................... TTGGCACAACACACCAGGAGTAACAAGAATGCG 2068637 37 100.0 36 ..................................... GAGCGGGTGAGACGCTGGACGCGGTGGCGGGCTTCC 2068710 37 100.0 34 ..................................... GCGCTGCCATCGCTGCCGAGCGCAAAGCTCGCAA 2068781 37 100.0 35 ..................................... CAGCTTGCTCGACCTGGGCAATGCGCTGGTCGAGG 2068853 37 100.0 34 ..................................... CAGATGTGGGCACGGTGCGCCTCCTGGGGTAATT 2068924 37 100.0 35 ..................................... CACTGCGCCCGCTTCCACCCCAGCTGCTGCAGCAG 2068996 37 100.0 35 ..................................... AGGCTGAAAAGAATCGAGGATGGGATGCGGGTGCC 2069068 37 100.0 38 ..................................... ATGAGCACTGCGCCGACGTTGTTGCTGGAAGGAACAAG 2069143 37 100.0 34 ..................................... ACTGCTTATCGCCTGCGGAGCGCGTCTCTTGGGC 2069214 37 100.0 35 ..................................... AGAAGCTGGTTTGCCGATTGGGATATTTCGGGAAC 2069286 37 100.0 37 ..................................... TAAAAGTTTGATCGCGCTTCCGGTGGAGTAGCGCCAT 2069360 37 100.0 35 ..................................... TGAAGTTATCACAAAATCTGGGTTTAACACCGCTG 2069432 37 100.0 35 ..................................... TGGGTAGTAGCGGTTTGGCGGGTGGCGAAATTGTA 2069504 37 100.0 43 ..................................... TCGGAAGCGATTATCTTCGAGACTTTAGCGGAAGCTTCCGAAG 2069584 37 100.0 33 ..................................... TTGATGAGATGCCAGCCTACCGCCGTAAATCGA 2069654 37 100.0 36 ..................................... CGTGCCCAACGGCACCGGGGATATGGACTGGATAGA 2069727 37 100.0 37 ..................................... TAGGAGGCGTCGCGCTTTCCTATTTGCACAATATCAA 2069801 37 100.0 35 ..................................... ATTTTCGACGCAATTGATCATTCGTTTTCCAATAG 2069873 37 100.0 34 ..................................... GCCCTACCCTTTCACAATTGGCGACACTTTCGAC 2069944 37 100.0 34 ..................................... CTAAGCACTGCCCGTGCAGGCCGGGGGCAGGATC 2070015 37 100.0 35 ..................................... AGGTAGAGAACTCAAGATCTCCTCGAAGGCGAACG 2070087 37 100.0 37 ..................................... AGACGCACATCCTCAGCAGAAGGATCAGTGATGCCGC 2070161 37 94.6 0 .................................GC.. | T [2070196] ========== ====== ====== ====== ===================================== ======================================================= ================== 46 37 99.9 36 ATCGAAACGACCACCATCCCTGCAAAGGGATTGAAAC # Left flank : GACAAGCGCCGGACAAAGATCCACAACGCCCTGAAGTCCTACGGCGAGTGGGTGCAGTTCAGCGTCTTCGAGTGCGACCTGGACGATACGAACTACGCTCGCCTGCGGGCACGCCTTTCAGCACTGATCAAACCCGAGGAGGACAGCATCCGGTTTTACTTTCTCTGCCGCACCTGCAGCCCAAAGATCGAGCGCATCGGTGGCAAGCCGCCCACCGACGACAGCATTTTCTTTGCCGGGTGAACCAGCGTGCGCGGATGGGAGGCTGTAAAAATCCAAGACTCAGCCAGAAGGCCCTCAAACCCTCTCTGTGCTTGCCTTTCAACCCCCAGCCCTCAAAGATCGATCCGCGCAACGGCTCAAAAGTGCTCCAGAAGCACCTTCCAGCCGCGCAACGGCTCAAAGAAGCAACTCCACCCTTGCCCAAGATCGCGTATGATATGTCGGTCCGCGCAAATGCACCTTGAAAACTGCATACTACACAGCATCCAGGCCGCGCC # Right flank : CGCTTTCCACCGGACGTGCCAGCTTTCATAATCCGATGGACTCAGACGGTAACGGGTGATGTTGCCCAAGTGCAGGCTTTCCAGCTCATCGAGGATTGTCTCTACCAGTCGGTCTCGTTCGTCGGCTTCGAATGGCGCGCTTGCGAACTGCAGGGTGAATTGCTCCGCTGCTTCGCGATCCAGCTTTTCTCTGACAACGTGCCTCACAGCTTCGGACACTTGCTGACGGTAGCGCATCCGAAAACGATCGGGTTCACCTAGAGAATGGCGCACGGCCAGATAGCGAGCACAGGAGCGCTCGTATGCCCAGACGAAGACATCCCGCATCAGCTCGATCCGGTTCAATTCATAAATGCCGAGAATGCCCTCGATATAGCTCTGCTCTGGCACTTCTGTAAAAGAGAGGGGACAGAGGTTGCCCTTGATGAGGGGAATGTTTGCCGCCAGTCGCGATACGCGCTTGTTGACATCCTCGAAGGGCTGCAGGTAGGGCAGATGGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGAAACGACCACCATCCCTGCAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 2486949-2486198 **** Predicted by CRISPRDetect 2.4 *** >NC_022600.1 Gloeobacter kilaueensis JS1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================================== ================== 2486948 23 100.0 60 ....................... GTTTGCCGCCCAGGTAGCGCACGGGCAACTGATCGCCGTTGTGGGTGTTCGAGTGGACCT 2486865 23 100.0 55 ....................... TTGATGTCCCATTCTTCCAGAAAGGCCCGGAGGCGACCCTCGTTCGAGTGGACCT 2486787 23 100.0 50 ....................... CTGGCAGGCGTTGCCGGATTCGAACAACTTCACCGCGTTCGAGTGGACCT 2486714 23 100.0 54 ....................... ACATCAACGCTTCAGCGTCGGACAATGGCGCATTCACCATGTTTGAGTGGACCT 2486637 23 100.0 56 ....................... TCGCCAGATCATCAGACAAGCACTCCTTTTCAGCACGAAGAAGTTTGAGTGGACCT 2486558 23 100.0 53 ....................... TCGCCATTCAGAATAGCGAAAATTATATTGAATGCCAAAGTTTGAGTGGACCT 2486482 23 100.0 66 ....................... ACCGCGCGCAGCCTCGACCAGCTGTTTGTGCAACAGTCGTTCAGCCATTGCGGTTTGAGTGGACCT 2486393 23 100.0 51 ....................... TTCGATAACTTGCTGCTGGAGTTGGTCATTGTCTTTCGTTCGAGTGGACCT C [2486392] 2486318 23 95.7 75 ....................T.. GCCCGGTTGTGTGCTGCACGGTCGTAGCCCAGCAGGGCCGGGTGGTGCTGCTGGATGTGAAGTTCGAGTGGATCT 2486220 23 91.3 0 ................T...T.. | ========== ====== ====== ====== ======================= =========================================================================== ================== 10 23 98.7 58 AATCCCCGCGAGGGGACGGAAAC # Left flank : AGACACAGAACATAGCAAAGGCGCACACTTTGAACAGTATGCAATCGAGCCGACAAAAGATGTAGCCAGCCTGGCGACCCACGGGTATGCGCAGCGGTGAAAGGAGTTTGTAGTTGGCCTCTCCCTACACTTCGGCATCTCGTTTACAAGACTTAACGCAAAAACTACCCGAGACGAGGCCAGCAAGCAGACCAAAGCCGCACCGGACAAGCACTCCAGCATCTTAAACTTATGTAAACGCCTGAACCAGTTCAAATCTGTCAGTCAAGATCCCACCAATATTTCCGAGCTGCAATAACCTGGAACCAAGCCTCGAAAGGTTTTTGCTTGACAGATAGCTCAAAAACACCTATCGTAATCGTGTTGCAGATACCACTGCTACAGTCCCCGCAAAAGGCAGATGTTACGCTTCGTAAAGCCGTGTAACGCGGCCTCGCGCAATCGAACCTTGAAACCTTTATACTGAGCCCATGTTAAGACGATAGGGTTCGAGTGGACCT # Right flank : GCGCTCGTGCTCGCCGTGCATTGGACGCTTCTCAACGGCTGATGCTACTTGCGTTTGGACTTGCGGTTTTGCTTGCGCGACTGCTTTTGCATCTGCCGCCGCGAGGCCGAGACAGACTTCTTGCTCGTGCCAGACGGCTCCAGGTGACTCCGATTCGACACACGCGGCAACAAGGGCGATGACTGGCCAGATGGTGGTCGGTCTTTGAGCCCGAGTTCTACCTGGACATCCTCCCAGTCGCCCACAAATATCGGGTCTACGGCATCGGCAGCATAGGCGCGTTCGATCACATCCGCCGCCTCGACCGCCTTGAGTCTTATCAGCCCATCGATGAGGACGGCATTGAGCCATTCGCTGTTGGTCTTGGCCCGCTCCAATATCTGCACCAGTGCCGCAACGACTTCGTCGCGAGCCTCGGGATGTTGCTCGGCAATCAGCGTCTGAGCGGTCGTCACCGCGTCTGAGGCTGGAGCGTTGGCCTCCTCTTCGAGAAAAGCCCG # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-1.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCGAGGGGACGGAAAC # Alternate repeat : GTTTGAGTGGACCTAATCCCCGCGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2602304-2600616 **** Predicted by CRISPRDetect 2.4 *** >NC_022600.1 Gloeobacter kilaueensis JS1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2602303 36 100.0 36 .................................... GATTTTCTCCTAACCCCGGAATGTCTGCAAGAAGCA 2602231 36 100.0 35 .................................... CGCACGCTTTTCGACTACTCCGCGCCAGAGCACTA 2602160 36 94.4 35 ....................C..............T GCGATCGGAAATCTCAGACCCGCCGGATTGGTTCT 2602089 36 100.0 35 .................................... GAGTAGAAGCCGCGTAACCTGCGCCGTATTATCAC 2602018 36 100.0 37 .................................... ACGTGCTCTTTACGCCCGAAAAAACCAACACTGGCAA 2601945 36 100.0 35 .................................... TTTGCCCAGGTTGTCCACTGCGCCCGCTTCCACCC 2601874 36 100.0 35 .................................... CAACGTGTACTCCCGCCAGATGCTCACGGTCTGGG 2601803 36 100.0 35 .................................... CGCGAGTGGTCGGATTGGGAAATCGGGCAGTGGCT 2601732 36 100.0 37 .................................... CCCGAAGGTGCTCCTCGGTTTCGAGCAGAACAATCTG 2601659 36 100.0 34 .................................... GAGTCGTTCGGAATGCGCATCTCTACTCTCCAAA 2601589 36 94.4 35 ....................C..............T GCGATCGGAAATCTCAGACCCGCCGGATTGGTTCT 2601518 36 100.0 37 .................................... TCCTAAGCGGTAGCACTTGAATACGGATTGTAATAAA 2601445 36 100.0 37 .................................... AGCTGACTACGCTCGTCGAGGCGCAGGACAAGCGGAT 2601372 36 100.0 35 .................................... AGCGCTGAGCCGGCGGACAGCGGCGCGGCCAATGT 2601301 36 100.0 35 .................................... TACTCTGGGCCGGTCGAGTTCGGACGGGACTACTA 2601230 36 100.0 37 .................................... ATCAAGTATTGCAGATATTCCGCGATTTGATCAAATT 2601157 36 100.0 36 .................................... CATTAATTGCTGATAATAAATCGTCGGGAATAAAAC 2601085 36 100.0 37 .................................... TCGGATTGTTAGCGAGGTGCGAAACTCCAGCAAAAGC 2601012 36 100.0 36 .................................... GTCATGACCTCGATAGATCATGAGCAATTCACTGAG 2600940 36 100.0 36 .................................... AGCATGTTTTCCGAGTCTGAGCATGTACTTGGTTTG 2600868 36 100.0 36 .................................... TCACCGTCGCAGATCCGATGGCGTCGATGGTGGCCG 2600796 36 100.0 36 .................................... CAGTTGGCCCAGGCAATACTTTGCAGGAGCGTGAAT 2600724 36 100.0 35 .................................... GAAGAAGGTGCAGCAAAATCATCCGTCGGACTCTC 2600653 36 91.7 0 ...............................C..TT | C,A [2600618,2600622] ========== ====== ====== ====== ==================================== ===================================== ================== 24 36 99.2 36 GTGCTCAACTCCGAAAGGAGTCACTGATTGAATCGC # Left flank : AATGTATGTGTCGTATGCCGTCACAGCACAGGCTTTTTCTTTGAGCACGGTGAGCAAATCATATTCGAGATCGCTGACCGTCTTTTTCGTTGCAGTCCCTTCCATTTGTGCGCCTCCAATAGAACTATTCTCCACAGCTTGCTTGAGGCTGACCTCCAGAGCATCCATCTTTTGACTGAATACTCTTGAAAGAAATATTTCAAGCTGGGAAAAATATCAGCATCGCCTGTGTGAAACCAGCATCCTGAGCGAAAATCGAATCAATCTGCTCCCCTCATCACAAAGTATTCAATCTCCGAAAAATTACTGATTGAATTACAAACTACTCTCGATGTAGCGCGAGTTTCAGACGCTTACCCAAAAAGGCGAGCCGTGGGAGGAGTTGCCCGTGCGCATGGCCACCTGTGCGCTACTGGTACTCAATCGCTACGGCATCCTGCCTGATCAGAGTCACTGATTGAATCGCACCCCCGATCAAGATCGGCGATTGCAGTCTCCTG # Right flank : GCATGAATGCCTGGGATGGGTCACAAGTAGTAGGGTCACTACTGCTTTTCTGCCCTGATGATGAGCTATCAGGATATCCAACATCTCAAGCCCACCGACTTCAAACGCCTCTGCGGTGTGCGAGTTGAAACCTTCCAGGCAATGGTCGATGTCCTTCGACCCGCTCTGGAGCGCACCGGCAAGCGTGGCGGACAGGCCAAACTCTCCACCGAAGACCAGTTGCTGCTTGCCCTGCAGTACTCGCGGGAGTACCCCCCATCCGGGGGGCAGGCCGCACCTACTTTCACATCGCTCAAAGCTGGGCTCTACACGAATCGACCGTCTGTCGTATCGTCCACAAAGTCGAGCGACTGCTGGTGCAATCCGGACGCTTTCGGCTGCCTTCGCGTCAAAGCGCTCAAACGAACGTACAACTGGAAGTGGTCGTTGTCGATGTGACAGAAGTGCCAATAGAACGGCCCAAAAAAAGCAGAGGCACTACTACAGCGGCAAACAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACTCCGAAAGGAGTCACTGATTGAATCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 4274932-4271404 **** Predicted by CRISPRDetect 2.4 *** >NC_022600.1 Gloeobacter kilaueensis JS1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================== ================== 4274931 36 100.0 38 .................................... GCTTTGCGCACATAGGGACCAGCTTCTGGGATAGGACC 4274857 36 100.0 46 .................................... AAACTAATAACTTATCAGCCGCTTACGATCTTGTCAAAGTGCAAAA 4274775 36 100.0 38 .................................... CGCTCTGAAAGTAGCTGATGATGTCGTTCTTCAAGCTT 4274701 36 100.0 42 .................................... TGCACCGTACAAGCGTTGCTGAGGGGCGTATCAATCAAGTTG 4274623 36 100.0 38 .................................... CAATTCGATTGGCATCAAAACTGATGCAATTTCAGCGT 4274549 36 100.0 51 .................................... TCGAGCGGTTTGTTAACCGCTACGTGACGCGCACTGTTGTGCACGAAGTTG 4274462 36 100.0 39 .................................... TTGAACGGCAAAATCGACTCGGTAACGCCAGTGTTGTCG 4274387 36 100.0 39 .................................... TCGTATTGAGTTGGTTGAATTGGTGGACAACTTCATAGA 4274312 36 100.0 38 .................................... GTGAGGAGATGGGGGACGGCGAGCTGGCGGCGGTTGAG 4274238 36 100.0 89 .................................... CTGAAACTCTCGTGCTCCAGCAGCAGAGCTAGGCCGTGGTTCCAGACACTGCGCAAGTCCGCAAGCCAGCTATCTATCAGCTGCTGCTG 4274113 36 100.0 83 .................................... GTTGCAAGGTCGGTAGTCTTTTGGTCGGCCATTGGTGCGTCAACCGGTAGTGAGAACGTTGCCGTTGTCTGCAAGCAGGCGGT 4273994 36 100.0 47 .................................... CTCAGCGTCGTTGTCAACAGTCTTGAACGTGCCCTTAGCACCCCAGC 4273911 36 100.0 41 .................................... CACCGCGCTGTAGGTATAGTCAGGTGGGTCGTGGCTGTCAG 4273834 36 100.0 50 .................................... GTCAAGCAGCGCCTGCATCGGCGTGTAAGGCTTGACGGGCTTGCCAACAA 4273748 36 100.0 47 .................................... CGGCTGTCTCAACCGCGCTACTAGACTATCAGCCCAATCACGTACGC 4273665 36 97.2 49 .............G...................... GAGTCAAAACGAGCCCTGTCCACCGGAACTATGCTGGGTCATTAGTAAG 4273580 36 100.0 36 .................................... CATCGATACCTGCGCTCCGCCGCCGCCCAGCTGGGT 4273508 36 100.0 41 .................................... TTCCGAATTACTTTCGTTATTGCTTTACCGCGACCAGACCT 4273431 36 100.0 43 .................................... CGACAAAAGGTGGTGAAGTAGACCACCAAAGACAGGAGGACGG 4273352 36 100.0 46 .................................... TTTAACAGCAAGAGCTTTGCCACGATCTTCGGCGATATCAACGCCT 4273270 36 100.0 87 .................................... CGGCCACTCGTGACCGAGGGGTTGGAAGCTGGGGTGTTTGTCATACGAGACTGCTGGAGCTCGTAGCGACTCTTAGCTTCGGCGCGG 4273147 36 100.0 38 .................................... CTGCACTTCGTCATAAAGCCCAGTTACGGTATAAGCCT 4273073 36 100.0 91 .................................... ATGAGGCCGTCAACGCCGAAGGCGGCGATGAAGATAACCCAACCAGCAGCCGCAAGTGCGGCGAGGGTGATGATGCGGATGACCATGATTT 4272946 36 100.0 40 .................................... TTGGTGAGCTGGTCCATGCGGTCGTAATGAAGATACTTGA 4272870 36 100.0 54 .................................... CTAGTCAGGGATGAGGATCTGACTATTTCCGTTTCCGTGCCGCCACCAACTCAT 4272780 36 100.0 37 .................................... CACTAGTTGAAGATCACCCAATACTTATAAACGAATG 4272707 36 100.0 43 .................................... GCGATCGGCGGGAGCTTTCCCCTCCACTCAGTAAGGCCACTGT 4272628 36 100.0 39 .................................... ATGCAGATTGTTTTTAACCCGCCATTGGTAATAGCGCTC 4272553 36 100.0 41 .................................... TTGTCCATTAAGTCACCCTCTTCTTCCAAATGACGCCGCCG 4272476 36 100.0 37 .................................... ATCTAAGTATCTGAGGCGTTTTCCTGCTCGCTACTCT 4272403 36 100.0 48 .................................... GTGAGGAATACGATGACGATGTCCATTTGAACTCCAGACCTAGTGAAA 4272319 36 100.0 41 .................................... AATTAGACTCCTTCTCCCGCAGTGCTGTTAGAAGACATGAA 4272242 36 100.0 39 .................................... GGAAAAGCCGGGGAACCAAAACGCCCCTCCGCCCCCATC 4272167 36 100.0 42 .................................... CCGGAGCTATTCGGTATACTATTGAGTCATTTAATCGAACTT 4272089 36 100.0 36 .................................... GTCGAATACGGACAACAATAACAAATCGGCACGGAT 4272017 36 100.0 43 .................................... AACTGCTTTCTGGTCTTCATCACGCTGGTCGTAAGCAGAGCCA 4271938 36 100.0 37 .................................... GTGCTGTTGGCACGATCGATATCGGCGCGAACAATCT 4271865 36 100.0 48 .................................... ACACCAAAGGTGATGCCACCCACTACGCAAGCAGTAATGTAAATGCGA 4271781 36 100.0 47 .................................... ATAAAAACTTTCGGGAGCCGAGGGCAGTCCACGTGAGAGTGGCGGGT 4271698 36 100.0 44 .................................... GGGTTAACCGGTCTGCGCCTGGGCGTCTCCGAGGGCCAGGAAGT 4271618 36 97.2 59 ..........T......................... GTGGTGACGTAGAGATTTTGAATGATTACCGATGGGCTACCGGGCGTGTTACCGGGCGT 4271523 36 100.0 48 .................................... GTGAGTACCTGGCACTCTAGATCCAACATACCGATCACTGTGCAGGAG 4271439 36 94.4 0 ..................A...............G. | ========== ====== ====== ====== ==================================== =========================================================================================== ================== 43 36 99.7 47 GTTCGACGTCCCTCAGCGGACGATTAGATTGGAAAC # Left flank : TCCGTTCAACGTCTACCGGATTCGCTGAAATGCTCTGGGTCGTCGCTTACGATATTCCTGTCACTAAACGTCGCAATAAGATCGCCAAGCTCCTCGAAGGATACGGGAAGCGTGTGCAGTACAGTGTGTTTGAGTGCGACCTGGAAGAGTCTCAGTTTTCGGAGCTGAGAAACCGTCTCCTGAAGCTTTTGAAACTTCCAGACGACTCACTTCGGTACTATCCTATCGCAGCCAATATGACCAGGAAAATTGTGATTTTGGGTGGAGATGGCCTCTATGAGAAACCGGATCATTTTGCTGTGTAAGTACTAACATTCAGCTGCGACAATTTCTGAAAAATGCTTGAGAGCCTATTTTACTGTAGAGGTTGTCGAATGCAAGCCTGGCAAGGATTTGAGCTTCTTCTTGTCCAGATTGCGTGTTGCTTCCACCCTGGCTACATGTTGGTCGTCGCAAAATCATCTTCAAGTCCACTTGTAGCAAGGGGTACACTGGAGACA # Right flank : CCACTTGCAAGTCTCAAAATAGGCCAGAAGCTTGTCACGTTCGACGTGTGTTAAGCGATAAAAGACCACATGCAGACCTGAGAAGCTCGACACCCCTTAATGGAAGATTGAGTTGAAATGTGCGCTCCAATTCTTGCCGTTAAACACTATCGGCTCTGCATTTTCTAGTTAGAGTGAATAATGCACAAGATGTTTGGCTGTCTCATTCAACCGATGATCGAGAAGCACTGCATCTTTATCGACAGAGCCAACAAGCTCTAGTGCTGCTAGAAATGGTTCCAATATCTTTACTCTGTAGGTGGAGGCGGGGCTTTCTCCAATCTCTGCTTGCTTGCCTGCCAGTAAATAGCGGACTACATCTTCTTCTTCAATCCCCCGTAAGTTGTGCATCAATTGGTTGCGCAGATCCTGCTCAGTAGACCGCTTATCATCGCAGATCCAGTTGAGCAATGGCCAACTAACAAAGTCTGCTCGAAGTGCTTTCAGCCACGGAAGCAAGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGACGTCCCTCAGCGGACGATTAGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //