Array 1 23955-23201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERQX010000015.1 Haloferax volcanii strain ID112 - delta_ftsZ1_delta_ftsZ2 scaffold_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 23954 30 100.0 38 .............................. TCGGGGTGGACGTTCTGCCGGGCATAGGCAATATATTG 23886 30 100.0 36 .............................. GAGCGGAGTCGATGGAAGCCGAGACGGAACAACTGT 23820 30 100.0 34 .............................. TCGGTGGTGTCGCGTATCGAATCACACGTCTGTG 23756 30 100.0 37 .............................. CGCTGGCGTCCGAGTAATTACGCCTGCCCCGAGTGCG 23689 30 100.0 36 .............................. AGCACCTCCGTGGGAGTTGTCGATTCTATCGAAGCG 23623 30 100.0 35 .............................. TGCTAGTCGGACCGAGGGAGGAAGCCTCTCGGATC 23558 30 100.0 37 .............................. GACAACGTTCGCCACCCCGAGACGGGTAACTTCACAG 23491 30 100.0 35 .............................. TGTGGGGAACAAGCAATAGAGGACTTTGAAGGATG 23426 30 100.0 35 .............................. CGTCCGGCGACCCGAATATGTCCGTCCCCGTGCGG 23361 30 100.0 37 .............................. GGCGACAACGACGGCAACCTCGAAGTCTGCGCCGCCT 23294 30 96.7 34 ......................G....... GGCACCTACGACCGCCGCTACAACGACGACCCGC 23230 30 80.0 0 .......G......TG......A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.1 36 GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Left flank : CTGACCGGCGAGCCGTATCACGCGACGGAGAAGTGGTGGTGAAATGCAAGTTATCGTCGTCTACGACGTGCCCGCCAAGAGGACTCGCATCTACCGTAAGTTGCTCCGCCGACGTTTGGAACATCTCCAGTATTCGGTCTTCTTCGGTGAGCTCACAGCAGGCCAAGTTACTGCGATGAAAAATGAAATCGAATCCGAACTCGAACCGACGGATTCGATTGTCGTCTTCGAATTCGACAACCCTCATGCGTTCGACCACACGACGTTCGGGGATGCGGACGAACCGGGGAGTCGGTTTACCTGAACTAAGGCACCACCTTGACAAGCGAACGGCGTCAACCGTGAGCGAGTCGGACGAGCGCGTTCGTCCGATCCAGTTCTCGAAACACAGATACATCATTTCCGTCGACCCCCCGGGGGGTACAGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : GAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATACTGCCGACGGGGGTGGTCACGATGGCGTTTCCGCCGGCCATGCCTTCGAGCATGGCGATGGGAAGCCCCTCGGCGTAGGTCGGGAGGACGAACACGGTGCCGCGGCTGAGGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACTTCGAAGTCGAGCCCCGGCGTCGATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 35273-34183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERQX010000015.1 Haloferax volcanii strain ID112 - delta_ftsZ1_delta_ftsZ2 scaffold_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 35272 30 100.0 37 .............................. GCAGGCATCTCGACCGGCGACCTCCCGGAACACTTTG 35205 30 100.0 37 .............................. TGCACAAGTCCATCAAAGAAGACGGTTACACGCAACC 35138 30 100.0 35 .............................. GTCCTCGACGAAGCCGGGGTCCAATTCGGGAACCG 35073 30 100.0 37 .............................. GCGACCGGGCCGAACGAAACCGCGCAGAACATCACGG 35006 30 100.0 36 .............................. AGGACACGTCTGCGCTGCGTGCGCCTACTGCATGAG 34940 30 100.0 36 .............................. GGGAGTGTATGCGATATCCCTTAAAACCCCCTACTT 34874 30 100.0 36 .............................. ACTCGTCGCACGTGTTAGTTTTCGGTTCGCTCGTTT 34808 30 100.0 36 .............................. GGCGGGCTCGGCAGGAGCTCGAAGACCGCTTTTCGG 34742 30 100.0 35 .............................. ACCGACGATGTAACTGTCTCGGCGGCAACGCTCCC 34677 30 100.0 36 .............................. ACTCTCCGCGTCCGACTGCTCGACATCCCGACATCG 34611 30 100.0 36 .............................. ACCGCGAAATCGGCGTCAATCGTCACGTCCGGTAGG 34545 30 100.0 36 .............................. CACTCTGCGAAGCCGTCGATGAAGTCCTCGAACTCC 34479 30 100.0 35 .............................. TTTTCTACGAGGTCGGAAACGGACACTTCGACGTT 34414 30 100.0 37 .............................. TCGAAGCCGCAGACGACGGCGCAGAGAGCGGTATCAC 34347 30 100.0 36 .............................. CGGCTCGACGACGATTACTTCGCGCTCGAAGCTCGT 34281 30 100.0 39 .............................. GTCGCTCGCGGGATCGACATCATCGCGCTCAAGGCGATG 34212 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 99.8 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TTCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCCGCGTGCGAACGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGCGAACGCGGAACCGCGAGTGTGGCGGAAGCCGAAGACGCACCACAACCGGCCGACTGAGGCCGGTGGGACTCTCGGTTGATTTTTCGCACCGCTGGTCGTGAGGAGAGGAGATTCGTTTCCGTCGACCCTCGGGGGGTACGGGGGAATTGAGGGTCGACGGAAACGTTGATGTGAGTTCGCTATGTACAGCCGTCTACCCCCGTGAATTCGGACGG # Right flank : CTAGACGGCACTGTCTCGGAGGGTGTGTCAAATTCACTGACAATAGAATAAAAACGTCGGCAACCAAGATGGAGGCACGGACATGAGGCCCCTTGCCAAGTGATTTTCAGGAGAACCGCCCCGGATTGAAGCAAGTATTGACAAGGGAAACCTCATGACACCCATCAGCCGAAGCGACAAACTGGGTGAGCACAGACGGTTCTCAACCGCTCGCGCGCGCTCCAGAAGTTAGTCGTACGCGAGAAGTTTCGCGCCATCGTTCTATTCATGATAGACATTGTGATATTTTGGATTAGCTACAAGTACTGACAATGAGAAGTGTTTTTCGTGGCACACGATCACACAACTTTGAGAGGGGTGATATGAGGCGTGCGTATAGAATTAGCGCTCGATGCCGTTGCTGATGCGGCCTACGACCGGTCTTATTTCCATAAGGCACGCGGACGCATCTGGCGCGGCCTCGAGAACGACGACACGTTCTCGGAGACCCACGATTCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 49969-48813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERQX010000003.1 Haloferax volcanii strain ID112 - delta_ftsZ1_delta_ftsZ2 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 49968 30 100.0 36 .............................. GAGGAAAGGTCCGAAGATGCCCTCGAATCTCAGAAA 49902 30 100.0 36 .............................. GAGGGAACGCACGTCTGCGGCGACTTCGAAGTCACG 49836 30 100.0 35 .............................. CGGTCGACGACCGGTTCATTGGTTCCACGCCCCCA 49771 30 100.0 36 .............................. ATGCCCGACCTCGTCCGAGACAACATCGTCGACGTC 49705 30 100.0 35 .............................. GACGGCACTGGCGGCTATGGGAGCATGCCGAACCC 49640 30 100.0 34 .............................. GACATCCGACTGCGACAAGAGACTGAACACGGTG 49576 30 100.0 37 .............................. ATCGAGTTCCGCATCGACGCCGACAGCGCATCGGACG 49509 30 100.0 37 .............................. GTCGAAATCCCCGCCGGAGCGAACGACCTCGACACCG 49442 30 100.0 37 .............................. ACCGCACTTGAAGCGGTTGACAACTCGGGGGCAGCGG 49375 30 100.0 37 .............................. AATTTTGCAAATGTTGTCGACACCTCAAACGACACGC 49308 30 100.0 36 .............................. TGGATAACGCCATGGCGGTGGGCGACGGCGAAGACT 49242 30 100.0 39 .............................. CGGATCGTAGACGTAGATGTCCAGGCGGTCGGCGTCCGA 49173 30 100.0 37 .............................. CGCCTATCGAGTGCTTTGCGAGGGGCGCGAGGAAAAG 49106 30 100.0 36 .............................. GGCCGTCGCGAGCGCTGGCTCGGTGGCGGTCCGACC 49040 30 100.0 34 .............................. TCCGTCGACGGGACTGCCCAGGCGCTCATGCAGT 48976 30 100.0 38 .............................. GCTCATGCGTCGACACCTCCGCTCGGGTGGTTGCCCGC 48908 30 100.0 36 .............................. TCGACTAACGTGGTCTCGTTCGGCGGCACGGTGGAT 48842 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 98.7 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : TCCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCATCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCGCCTCGAATTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACATCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAGTCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCTGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGACTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //