Array 1 26-765 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUQ01000001.1 Listeria monocytogenes strain FRR B 2982 FRRB2982_NODE_1_length_613021_cov_105.627_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 26 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 91 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 156 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 221 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 284 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 347 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 413 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 476 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 541 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 607 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 672 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 736 29 93.1 0 .......................A....C | C [759] ========== ====== ====== ====== ============================= ===================================== ================== 12 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : GTGTTATACCTGCAACAATACCAGTG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 306924-310000 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUQ01000003.1 Listeria monocytogenes strain FRR B 2982 FRRB2982_NODE_3_length_315356_cov_148.702_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 306924 36 100.0 30 .................................... TTACTGCTCTAGTGCCTAGACTAACTTCTA 306990 36 100.0 30 .................................... AATGAAAGCGAATCTTTCGGCATTTGGAAA 307056 36 100.0 30 .................................... ACGTGCAAATTTAAGTGGTGCAAATTTAAG 307122 36 100.0 30 .................................... CTCACTTCTCAAAAATGAGAAACGAGTAAT 307188 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 307254 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 307320 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 307386 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 307452 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 307518 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 307584 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 307650 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 307716 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 307782 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 307848 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 307914 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 307980 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 308046 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 308112 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 308178 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 308245 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 308311 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 308377 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 308443 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 308509 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 308575 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 308641 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 308707 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 308773 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 308839 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 308905 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 308971 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 309037 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 309103 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 309169 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 309235 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 309301 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 309367 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 309433 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 309499 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 309565 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 309631 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 309697 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 309764 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 309830 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 309896 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 309962 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [309987,309993,309996] ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49405-49762 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUQ01000013.1 Listeria monocytogenes strain FRR B 2982 FRRB2982_NODE_13_length_49772_cov_106.708_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //