Array 1 34986-35913 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYW01000052.1 Pseudomonas aeruginosa strain W21b-2 NODE_52_length_45707_cov_6.06795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34986 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 35046 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 35106 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 35166 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 35226 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 35286 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 35346 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 35406 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 35466 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 35526 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 35586 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 35646 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 35706 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 35766 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 35826 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 35886 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45365-44437 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYW01000052.1 Pseudomonas aeruginosa strain W21b-2 NODE_52_length_45707_cov_6.06795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45364 28 100.0 32 ............................ AGCTTCAGCAGAAGAGGCAAATACTCCTCAGC 45304 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 45244 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 45184 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 45124 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 45064 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 45004 28 100.0 32 ............................ TGATGCCCGACATGGGTCGGTTCGCGGGAACC 44944 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 44884 28 100.0 32 ............................ GCTGACCTGCCCTCATTGCCAGGGCACCGTGG 44824 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 44764 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 44704 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 44644 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 44584 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 44524 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 44464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8564-7396 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQYW01000086.1 Pseudomonas aeruginosa strain W21b-2 NODE_86_length_8905_cov_7.06972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8563 28 100.0 32 ............................ AAGCCCTCCCCCTGGAGCAGCCGAAGCGCGGG 8503 28 100.0 32 ............................ GTGATGGTGCCCATGCGGCGCATGTGCATCAG 8443 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 8383 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 8323 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 8263 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 8203 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 8143 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 8083 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 8023 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 7963 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 7903 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 7843 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 7783 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 7723 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 7663 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 7603 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 7543 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 7483 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 7423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //