Array 1 258-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXS01000065.1 Gallibacterium anatis strain 20558/3kl. contig000063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== =================================== ================== 257 40 100.0 35 ........................................ TTTTGAACGTTTTGAAGGTTCTTGGGATTGGGAGA 182 40 97.5 35 .....C.................................. TTTTGAGCGTTTTGAAGAGCGTTGGGATTGGAATT 107 40 97.5 0 ..............A......................... | ========== ====== ====== ====== ======================================== =================================== ================== 3 40 98.3 36 GGCTTTCTTATAATGAAGCCTTACCTTGGTCAATGGAGTT # Left flank : GCGTTCCAGCGTGGCAGAAATGCGTTACAAAATTGATCAAGTTTTTCAGGAGTTGCAGGCATTTCAGCAAAATCCTGTGTTAAATGTGTTACAGCGCATAGGCTCAGAACAAACGGATTGGGAAGCCTATCTCAACCAACAGCGCCCCCATTTAGAAAATGAACGCCAACGTTGGGAAGCGTTACTTGCCGAATTAATAGAAGCATAAGCAAATAAACAATTCCATTATTTAGTAACAGATAAGTTATAACGGACAGGAACAGCCACAATGAGCAAAAATGACATTATCCTACGCAATCCCAAACAAGGGGCATTAGTCAAAGCCACCCAACAAAGCCAAACCTTTCTCACATTATTGCAACAAAGCGATGAACAGCGTTTAATTGAACTGTTAAAAACTATTGATTTTAGCTCTGCTGCCACTTTGATTAGCAGTTTAGAGCATATAGAATGGACAGTGGAATTTATTGAAAAATATGCAGAGTATTGGGATTGGGAGA # Right flank : TAATTGAGCGTTTTGAAGAGCGTTGGGATTGGCTGGGACTTTCTCTTAATGAAGCCTTACCTTGGTCA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTTCTTATAATGAAGCCTTACCTTGGTCAATGGAGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 47254-45733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXS01000072.1 Gallibacterium anatis strain 20558/3kl. contig000070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 47253 36 100.0 36 .................................... AGCACTTGCACGATTGCCAATGCTTACTGATAAGCA 47181 36 100.0 37 .................................... CAATGATAAAGCTATCGAACACGTGTTCATATTGTGC 47108 36 100.0 33 .................................... GTACTCTTTTTGCAGACGCTCCGCCTCCTCTAG 47039 36 100.0 35 .................................... CCGCCTTGATACTCATACCCGTCCGCATCTTCAGC 46968 36 100.0 37 .................................... TATCGTATTCTCCCCCAAGTCTGCCACGTGTACCCGT 46895 36 100.0 34 .................................... CTCGATAATCTCTTCAACCACCCGCCACGCTGTC 46825 36 100.0 31 .................................... TGATATCCCCCTCGTAACAGAAGTGATAAGG 46758 36 100.0 37 .................................... TTTACGTCTTCTTTTGGCTTTTTGTTTCATAAAATTT 46685 36 100.0 36 .................................... AATACCCCACGATAAAGGATTTCCCACTCTACCGCA 46613 36 100.0 34 .................................... GATAACTAAAGCACATTTACATACTGTGCAATTT 46543 36 100.0 37 .................................... GAATGACCGTTTTGCATAGGCTTTTGAGACCTATAAT 46470 36 100.0 34 .................................... TCATCCCATTCTTTAGCGTGAGTTTCGTTTCGAT 46400 36 100.0 33 .................................... TTTATTTATTTGATCATCCGTCACCCTTGAAAA 46331 36 100.0 36 .................................... TGATGTTATTAGACGGTTTTCAATTTCTGGATAACC 46259 36 100.0 36 .................................... TTTTTTAAATCCATAATATCTGAATGTGAAAGTTCA 46187 36 100.0 36 .................................... CTGCCATTGGATCGTCATAGCAATCTGAATCGTATT 46115 36 100.0 29 .................................... TCGATGTTGATCTATTTTCCATTTTTGAT 46050 36 100.0 38 .................................... GCCATCTAGGATTTAGAATTGCATTTTTATCAGTGTCT 45976 36 100.0 32 .................................... CATAATGCAAAATCAAATAAATCAAATAATGT 45908 36 100.0 32 .................................... TAAATTCAGGGTCTACCATATCTAATAGATCC 45840 36 100.0 36 .................................... GCTATCCTCCTGTTTGTTGGTGTTCTATCTGTCTTA 45768 36 88.9 0 ...............................A.TTT | ========== ====== ====== ====== ==================================== ====================================== ================== 22 36 99.5 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAAGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCACTACCAACTAGACTATAATTTTGATTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : TATAAAAGACATCAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTGTAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAATATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTATATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATAACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14086-14513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXS01000009.1 Gallibacterium anatis strain 20558/3kl. contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14086 32 100.0 34 ................................ TGGTAACTTATGGATAACATCCATAAGATCCCAA 14152 32 100.0 33 ................................ TAATAACCGGTTATAAGGATTGGGGTAAGGCAC 14217 32 100.0 34 ................................ CTATATAGGCGGATTGCCTGAACGTAAGGCGGTT 14283 32 100.0 34 ................................ CATACAATGCGGAAGGTATCGCAATGCACCGGGC 14349 32 100.0 36 ................................ AGCGATATAAATCTCAATTGGATTAATGCGATAACT 14417 32 96.9 33 ...........T.................... TATATTCCAGCAGGAATATCAGGATCTTCTCAA 14482 32 90.6 0 ...........................T..GT | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.2 34 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : AAAAACTAAATAACTTAAATTTGAAATAATGAATCTATCACAAAAAATCATTGTTATTTTGAATATCTTTTCTCTTTTTGATCAAAGTTATCATTAATTTATAAAGGGTATTTTGTATATTGATTCCATTGATTCTTGGTAATTATTCCAGATCAATGGGTTAAACTAAAAACAAAATTATTAGATATTTATCAACCGGAATGTGACAGTTTACGCTTTTACCATCTAGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATTCTATTTTATTTTATGATATACTCGTCCACTGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGCTAATGTTTTAGTATATGCT # Right flank : TCAATACCAAATCATCTCTGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCAGCATTAATCATTACCTAACACATTTAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGTCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACCGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAGTAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTACGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //