Array 1 60-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000041.1 Fischerella thermalis 111/344/542 NODE_18612_length_2694_cov_90.194878, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 60 37 100.0 65 ..................................... ATTTTTATCTTTTTTCATGATGGTTGCTCCTCGACCTCCTGCGGGATAAACAAATCCCTTAGAGC A [85] 163 37 100.0 31 ..................................... CTTGACCTACAAGGCTTCCATTGGGAAGCCT 231 37 100.0 63 ..................................... ATTTTTATCTTTTTTCATGATGGTTGCTCCGAGATCCGGAACATTATCTGACGCCGGGTGCAC 331 37 100.0 107 ..................................... CTAGATCCGGAACATTATCTGACGCCGGGCGTTTTTGTCCAGGACGTATCCCATTTGCCGGGCAATTGAAACCCCAGATCCGGAACATTATCTGACGCCGGGTGCAC 475 37 100.0 35 ..................................... AGACTAACTGCGCCTTTGGCTACCAACTTTGTGAT 547 37 100.0 32 ..................................... CTTGCTCGCACGGCGTCCTCACCCAATCCTGC 616 37 100.0 36 ..................................... CAATCCGATGCTGGCAATGCCCCACCCTTCATCCAA 689 37 64.9 26 .......................NNNNNNNNNNG.GT ACCCCGAGCCACTCCTGCACTTGAGG Deletion [752] 752 37 100.0 35 ..................................... CTACTAACTGCGCCTTTGGCTACCAACTTTGTGAT 824 37 100.0 38 ..................................... AGGCCTCCTTGTATGTGCCGAAGCACACGGGTTCTATC 899 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================================================================================== ================== 11 37 96.8 47 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTAATCCCTATTAGGGATTGAAACCTAAGGTATTCAGGGATATTATTAACGAGACTGAAG # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCAATTCCTCCCCCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-1.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 69366-69618 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000077.1 Fischerella thermalis 111/344/542 NODE_39736_length_69648_cov_167.532043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 69366 37 97.3 36 ..........G.......................... AGGTTGTCCTCGATCGCGCCTCCGATCGCGTACCAC 69439 37 100.0 34 ..................................... CTGAAATCGGAGATTCCGCATATGAGAGAAACTC 69510 37 100.0 35 ..................................... CATCTGGGTATGGATGTTGTTCAGGAGCGTCTTGG 69582 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : CTGATTGGGCTGCGGCGAGATCCGCTTCGAGATCGGGTTGAAATCAACTAAAATCCCT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 82409-82594 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000092.1 Fischerella thermalis 111/344/542 NODE_54990_length_83881_cov_160.261887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 82409 37 100.0 36 ..................................... GGAAAGCGGTTGTGGAGATTGGGAGGGTGGGGATTG 82482 37 100.0 39 ..................................... ACATCTTCTAAGAATTCATCTTGGAAGGTGACCAATCTC 82558 37 67.6 0 .........................NNNNNNNNNNNN | ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 89.2 38 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACCTTTATGGCATATAGGTGGGCATACAGTTGCAACTTAAATAAATCCCTATTANNNNNNNNNNNNNNNNNNCTAGCGTAACCAAGGGGTGGGAATGACTGTTGCAACTTAAATAAATCCCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTCTTCGCCTTGAACCCCGGAAAAGTTGCAACTTAAATAAATCCCTATTNNNNNNNNNNNNTTACATCTCTAATCTAGCACCCATACACGAGTTGCAACTTAAATAAATCCCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGATAGTTCCGAGTCCTGGATCCTGGTTGCAACTTAAATAAATCCCTATTNNNNNNNNN # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 437-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000096.1 Fischerella thermalis 111/344/542 NODE_58495_length_1542_cov_23.120623, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 437 37 100.0 35 ..................................... CTGGTGGGCGGTAGGCGGTAGAGCGATCGCCTATT 509 37 100.0 34 ..................................... GACCATCGAGGTAGGCAATCTGCAAGTACTGCTT 580 37 70.3 0 ..........................NNNNNNNNNNN | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 90.1 35 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : AGGGATTGAAACATCGGCAGATCCCTTCCCCCTGCCAATGACCCCTCCCGTGGAGAGTTGCAACTTAAATAAATCCCTATTNNNNNNNNNNATCTCTACGTACTCGAAGGATGGCGTGATCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTGGTGGGCGGTAGGCGGTAGAGCGATCGCCTATTGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACTACGCAGGCTGCACAGATTTCGACCTATATATATAGGGTTGCAACTTAAATAAATCCCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTCGTACAACTCGTCATCCTCATCCGGTCTCCTAGGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGAGCTTGGCTTGGGCGGTTACTAGGTTCTAGTTGCAACTTAAATAAATNNNNNNNNNNNNNNNNNNNTGGCGATCGCGTATCATTTCTCTCGTACACCCAATAGTTGCAACTTAAATAAANNNNNNNNNNNNNNNNNNNNGGCGCGATCGCGATAGGTGAAGAGTAGTTCGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGAGAAAATTGCAAAGAGCATCATCAGAGATCTTAAAAGAGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGGGGCGCGATCGCGTCGTTCGTAGCGCAACGCTTTGCCTACGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGTGAACGCGCTGACTCGCACTTGGGGCGCGATCGCG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.50, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 888-1079 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000096.1 Fischerella thermalis 111/344/542 NODE_58495_length_1542_cov_23.120623, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 888 37 100.0 39 ..................................... GAGAAAATTGCAAAGAGCATCATCAGAGATCTTAAAAGA 964 37 100.0 42 ..................................... GGGGCGCGATCGCGTCGTTCGTAGCGCAACGCTTTGCCTACG 1043 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 3 37 100.0 41 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : NNNNNNNNNNCATCTCGTACAACTCGTCATCCTCATCCGGTCTCCTAGGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACCTGGTGGGCGGTAGGCGGTAGAGCGATCGCCTATTGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGACCATCGAGGTAGGCAATCTGCAAGTACTGCTTGTTGCAACTTAAATAAATCCCTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGAGCTTGGCTTGGGCGGTTACTAGGTTCTAGTTGCAACTTAAATAAATNNNNNNNNNNNNNNNNNNNTGGCGATCGCGTATCATTTCTCTCGTACACCCAATAGTTGCAACTTAAATAAANNNNNNNNNNNNNNNNNNNNGGCGCGATCGCGATAGGTGAAGAGTAGTTC # Right flank : GTGAACGCGCTGACTCGCACTTGGGGCGCGATCGCGTCGTTGTTGCAACTTAAATAAATCCCTATTNNNNNNNNNNATCGCCGGATGGTGCCTGCTGCTCGGTCGGCACCAGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACAATCCGCCGCAGAGTCCCATCCCCTTCGAGGACTTGGCGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACAAGTGCGATCGACCAGACCGAGGGCTTTGCTGGTTGCAACTTAAATAAATCCCTATTNNNNNNNNNNTGCAATAGCCATGAGCGCTAAAGGATGGCTAATGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGATTATCGGACTGACGAGACCCAAAGTACAAGGTTGCAACTTAAATAAATCCCTATTAGGGATTGAAACGAAAGAAGCCATATTTTTCTCCTAGGTGAGTGTGTTGCAACTTAAATAAATCCCTATTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 1230-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000098.1 Fischerella thermalis 111/344/542 NODE_60628_length_1473_cov_32.172436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================================================== ================== 1229 24 100.0 50 ........................ GCCTCAAACGCCAGATTACCCGCCCATCGCGCGGGAAGTTGCAACTTCAA 1155 24 100.0 3 ........................ TTA Deletion [1129] 1128 24 100.0 46 ........................ CTTTGGGGCGATCGCGAACAAAAGAAAAAGCCNNNNNNNNNNNNNN 1058 24 95.8 41 N....................... ACCTGTGGGAGAAACTCCAGCCACAACTCCCCGNNNNNNNN 993 24 91.7 65 NN...................... TGGTGGCACCAGCGCGAATGAATGAGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 904 24 91.7 46 NN...................... GAAAAGTGCCGTGAACTTTATCGAAGAAGTAGAGTTGCAACTTCAA 834 24 100.0 83 ........................ TTCCTACACTCCAGTCCACGGAACCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 727 24 95.8 56 N....................... CAGGTATAAAACCCTTAGACTCAGACAAGTATNNNNNNNNNNNNNNNNNNNNNNNN 647 24 100.0 48 ........................ TGTCAAGCGATCGCCAAGAAAAGGCGANNNNNNNNNNNNNNNNNNNNN 575 24 95.8 53 N....................... GATGCAAAGTTTGGGTCTGAGCTTGCAACAANNNNNNNNNNNNNNNNNNNNNN 498 24 100.0 52 ........................ CTTGTTTTTGCGATTGCGTGAAAGTGTTCCACTCGGCGAGTTGCAACTTCAA 422 24 100.0 4 ........................ TTAA Deletion [395] 394 24 100.0 34 ........................ TAATGGTTAGTCGGTGTCGCATAGGCANNNNNNN Deletion [337] 336 24 87.5 50 NNN..................... GGATCTTCTTTTAATTCTCCTTCTGATTGTCCTAAGAGTTGCAACTTCAA 262 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================================================== ================== 15 24 97.2 45 TTAATCCCTATTAGGGATTGAAAC # Left flank : TAATCCCTATTAGGGATTGAAACGACCATCCGCCCAATCTTTCTTCTTTGTNNNNNNNNNNNNNNNNNNAATCCCTATTAGGGATTGAAACTGTCTAGCGATCGCTGCACACTTTTTCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCCTATTAGGGATTGAAACTCCGAGCAGGCACTCAAGCAAAGCGGCTTAGGCGCGATCGTTAGTTGCAACTTA # Right flank : CTTAATTAATCCCTATTAGGGATTGAAACGAGGATCAATGGAGCATGAAGGAGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCCCTATTAGGGATTGAAACTTTCAGCTGCTTCAATCGCTTTGGCACGCTTGAAAGTTGCAACTTAATTAATCCCTATTAGGGATTGAAACATCGACCCCTTTACCTAGCGAGGGATCCCATTCGTTGCAACTTCAATTAATCCCTAT # Questionable array : NO Score: 8.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.93, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 10799-10247 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAA01000099.1 Fischerella thermalis 111/344/542 NODE_65273_length_10841_cov_135.224884, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================== ================== 10798 26 100.0 3 .......................... TTA Deletion [10770] 10769 26 100.0 44 .......................... CGGCAAGCGCCAACTGTGACTTGCTCCCAAGAAAGTTGCAACTT 10699 26 100.0 46 .......................... CTGACTACGACCAGCTTGCCATCTGCTTCTGGCAAGTTGCAACTTA 10627 26 100.0 78 .......................... TCTGCGCCCACCTAGGCAAAACAAAAAGCCGGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 10523 26 92.3 49 NN........................ AGGTACTTGGCGACATCCCCGTTCTTGCCCGCCCATAAGTTGCAACTTC 10448 26 100.0 3 .......................... TTA Deletion [10420] 10419 26 100.0 44 .......................... AGTATTCAGCTTTTTTATTCATTTCTCATTCAAGTTGCAACTTC 10349 26 100.0 51 .......................... TTGGCGGCGAATCGAATCGAGATACAGCTGCTGGAGCTAAGTTGCAACTTC 10272 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================================================== ================== 9 26 99.1 40 AATTAATCCCTATTAGGGATTGAAAC # Left flank : TAATCCCTATTAGGGATTGAAACTGATGGCGGGCTTATTCTCCCAAGCAAGCGCGATCAAGTTGCAACTT # Right flank : TTACTCTAGCAAATACAGCGATCGCTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCCTATTAGGGATTGAAACTTTTAGTAACCCATTCATGTCACCGGTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATCCCTATTAGGGATTGAAACTTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTTGTTGCAACTTAAATTAATCCCTATTGGCGTTGCTGAATTTGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAAAGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGCTTCAGCAACGCCAAATAAATCCTTA # Questionable array : NO Score: 8.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-1.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //