Array 1 184035-181446 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAFU01000002.1 Klebsiella pneumoniae strain CDPH5262 contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184034 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 183973 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 183912 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 183850 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 183789 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 183728 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 183667 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 183606 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 183545 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 183484 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 183423 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 183362 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 183301 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 183240 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 183179 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 183118 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 183057 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 182996 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 182935 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 182874 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 182813 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 182752 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 182691 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 182630 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 182569 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 182508 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 182447 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 182386 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 182325 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 182264 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 182203 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 182142 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 182081 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 182020 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 181959 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 181898 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 181837 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 181776 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 181715 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 181654 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 181593 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 181532 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 181474 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //