Array 1 293236-293906 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RYFP01000001.1 Listeria monocytogenes strain 41E03 contig00001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    293236	    29	 100.0	    35	.............................	ACGATTGAAAAACTGCAAAAGGTCGCAGACTTCTT  	
    293300	    29	 100.0	    37	.............................	TTTCCCACTACTGCCTTAAAATGCGTGCCTGGCGTGA	
    293366	    29	 100.0	    34	.............................	ACATGCGACACAGTTCGCGGTGAAATTCCGCAGC   	
    293429	    29	 100.0	    36	.............................	ATCTCTATCAATTGGCAAAAGTGAATTTGTGGTAGT 	
    293494	    29	 100.0	    35	.............................	TTGTCATCATATTTAAAAACTTTTATTAACTCACT  	
    293558	    29	  96.6	    34	..............T..............	ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT   	
    293621	    29	  93.1	    36	..............T...A..........	ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 	
    293686	    29	  96.6	    35	..............T..............	TTATGACTTCATCACCTTCCATGTAACACTATTTT  	
    293750	    29	  93.1	    35	..............T...........G..	ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT  	
    293814	    29	  96.6	    35	......T......................	GGAATCACGGATAGTCAGGCGAAGATAACTAAACC  	
    293878	    29	  79.3	     0	......A.......TCA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        11	    29	  95.9	    35	GTTTTAGTTACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCCCATTCAGATTTAACTCCATCACCATCCATCAAAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACATCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA

# Questionable array : NO	 Score: 5.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTAATGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTATTGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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