Array 1 23140-22185 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCX01000032.1 Flavobacterium columnare strain 1201 NODE_32_length_27947_cov_17.3023_ID_20592, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23139 35 86.1 29 AA.A.-C............................. AACTTTCGTTTTTGTCCCATAAAAGGGAA 23075 36 100.0 30 .................................... TGGCGGCGTAGGAGCAGGTGGGTCTTGTGG 23009 36 100.0 30 .................................... TACCTATGAGGTCGATAATCTCTTGAGTTG 22943 36 100.0 30 .................................... CCTGTTACTAAATTACAGCATGAGGTAGTA 22877 36 100.0 30 .................................... AGAAAGAGGCTTAAGCTTTGCAATATCAGA 22811 36 100.0 29 .................................... AAATTCATGTAGATACGTAGCCATTGTGT 22746 36 100.0 30 .................................... TTACCCGAAATGATACATCGCACTGGATAG 22680 36 100.0 29 .................................... TATAAAGTGCATTACAACACCTTGGAGGA 22615 36 100.0 29 .................................... TTAAATTCTAACATCTCTTTACTTAGTTC 22550 36 100.0 30 .................................... TACTACCACTTTGCGCAGTTGCCGTTCCTG 22484 36 100.0 30 .................................... TACAAAGTATGAATTATTTACCGATGCCGA 22418 36 100.0 30 .................................... AAGAGAGTGTAAAGAAAAACAAGCCCAATG 22352 36 100.0 30 .................................... TGTATTCAAAGGCGCGGGTGAAGATGCTGG 22286 36 100.0 30 .................................... TAACACAGTTAATAAACTTACTGTTAAACA 22220 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAAGATTATATAAGCTTTCAAAATTTGATGCTCAAGGAAGACTTACATTTAGATTACATACTGAAGCAAGACAAGCTAGTGAACTAAAAGAGATTTACGATATGGATTTTGAAAATACTTCAGATCAAATAAGACTTCAAGTAAGCAAATTAAATATGGCTGTACAAGGTTATGAGTTTGATCTTAACGCATCTGGCAAGATAATTTTTAAAGATTTTATTTAAAAAATAACAACCTGATGAAAATTACAGTGATGTAATTAAGCTCTTTGATTTATTGAGATTTGAAAACAAAGTATTAATAATTGAATACGATCAGTTCGTTATCAGTTGCGGTTTAAAACACCTGATTAATATTTGTTATTTTATGTTTGGGAATTTATTTGATTAATCCCGATAGTTATCGGGAAGGAAAAACGATATTTACTTTACGTACATTTCGTTTTTGATTAGTTGTGGTTTACAAATACCAAGTTACTATTTGTTATAGGAGTGTTTGTG # Right flank : AGTTGAGGTGTAATCTTCTGATATTAAAAGAATTAGTTTAAAATATCGTTTTAAAAAATGCTTCTTTTTTGCCTTGATTAAGCAAGATTGAAGCATTTTTTTGTTTCTAAAATAATTCTAATTGAGAGGGTTGTGGTGCGGTAGGAACCTCTGTTTTGCCCCAAAAGTTTTGAATGTTACCAAATTGCTTATCCGTAATCCGTAAAATACTCACTTTGCCTAATGGAGGCAAAAGTTTATAAATGCGTTTTTCGTGTACGTCAGCACTTTCACTACTAGCGCAATGCCGTATGTATACTGAGTACTGCATCATATTAAATCCATCTTTAAGTAAATTGTTTCTAAATGAAGAAGCATTTTTGCGATCCTTCTGGGTATCCGTTGGTAAATCAAAAAAGACAAATAACCACATAATTCGATAACCATTTAGTTCCATAATTTAGGATATTTTATTTTCTTCCGCTCTCCAATAAAACAACCTTGTAGGGAATAGGCTGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12385-13207 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCX01000068.1 Flavobacterium columnare strain 1201 NODE_68_length_15129_cov_18.7308_ID_20664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12385 36 91.7 31 ....G......................G.C...... TACAAATGCTCTTTTTCAATCGTTTTTTTAA 12452 36 91.7 29 ....G......................G.C...... TGAAATTGATTTGATTTTTCAAAACGAGA 12517 36 91.7 29 ....G......................G.C...... TGTTTCCCTTTTTGTAAATTGAATCCTTT 12582 36 91.7 30 ....G......................G.C...... CCTCTTCTAAGAACAGAATATACTTGATTA 12648 36 91.7 30 ....G......................G.C...... TTACCAGGTCTTCCTCCGCCACGATCAATA 12714 36 100.0 29 .................................... ATTTTCCAATCATCATTTAAAGAATATAT 12779 36 100.0 30 .................................... GGATCCTATTTTTGATTCTTTTAAAAAAGT 12845 36 100.0 30 .................................... ATCGAATGTTTGATCAAAAAACACGGTAAA 12911 36 100.0 30 .................................... ACAACTGATTCAACCGTTTTATAAATAAAA 12977 36 97.2 29 ............T....................... GTTTAGCCTGTTCTTTTTCTAAATCTGAA 13042 36 100.0 29 .................................... CAGGTAGCTTGTCTTCATCTAACAAGCAA 13107 36 100.0 29 .................................... TTTAGCTATAAGACTAACAAAAGTAAATG 13172 36 97.2 0 ......................C............. | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 96.4 30 GTTGTGAAAGCCCTTATTTTGAAGGGTAAATACAAC # Left flank : TTTAGGAAATATATAGAAGAAGGAATTTTAAATAAAATACTTCCTAATGAAAATCAAGTCGAAATTTTAAGAGGAATAGATTTCGACGATTTAAGCTGGGCATTTGACAGTTCTGAAAGAAATGAGGAGCAAAAAGAAAAAATAAATCTATATAATCAAATTACTAATCCACAAGTTCAAAGAGGTTTGATTTTAATTATGATACGCAACAAAATAGCACACAATCAATATCCACCAAAATACATTTACGATCTTGCGCAAACATTTATTCCTAAAGAAGAAAACGAATATTTTGCAAGCTATTTTAATCGTGTTTTTAAAGAAATGACAAAGAAGTTGTTGCAAAGTTTAGAAAATAATTAAACGATCCTTGCTCTTTGACAAACTGAAATTGAATTTTAAAAATGACTATTTTTGCATCTTATACAATAAGAAAAGTTCATTTTTTATTTAAAAATATTGTAGATATCCCTAGATAATTAAGGCTTCTCGACATTACT # Right flank : CGGTAGCCATTCCCATAACATTCAAAGTCTGGTTGTGAAAGCTCTTTTTTACTCACGCTGTTTCTATTGTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTAAATACAACTTGGTTGAGTAATGAATGTTAATAAGCTTAGTTGTTTATTTCTTGCCAATTATTTTTAGTGTATGTTTTCCAACTAAATTATTTCTAATAAAAAACCGATGACTTATATTTGAACAATATAAAATAGGTTGAAGAATTTATAATTCTGAATACCTTAAACTTCTACACTTACAAATGAGAACACACTTCATAGCCATAGGCGGTGCAGCCATGCACAATTTAGCACTAGCATTACACAACAAAGGGTACAAAGTAACAGGTAGCGATGACGCTATTTTTGAACCTTCTAAATCACGATTAGAAGCTAAAGGATTATTACCAGCCGAATTAGGTTGGTTTCCAGAAAGAATAACTCAGGATATAGAAGCGATCATTTTAGGAATGC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAAAGCCCTTATTTTGAAGGGTAAATACAAC # Alternate repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTGACTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //