Array 1 44414-42676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAK01000246.1 Escherichia coli strain ECOR26 ECOR26_contig_33_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44413 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 44351 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 44290 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 44229 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 44168 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 44107 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 44046 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 43985 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 43924 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 43863 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 43802 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 43741 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 43680 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 43619 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 43558 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 43497 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 43436 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 43375 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 43314 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 43253 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 43192 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 43131 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 43070 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 43009 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 42948 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 42887 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 42826 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 42765 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 42704 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43778-45149 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAK01000274.1 Escherichia coli strain ECOR26 ECOR26_contig_59_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43778 29 100.0 32 ............................. GTTTGCAAACGCGGTTTGAATCCCGCCGTAAT 43839 29 100.0 32 ............................. CGGATCGTGTGTGTGCCAGCGCTGCGCCCAGG 43900 29 100.0 33 ............................. GGATTTGCGCGTGGTGAACACGGCAACACCTGC 43962 29 100.0 32 ............................. ACCATAACCTGCCCACCCGTTATTTTGTCATC 44023 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 44084 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44145 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44206 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44267 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44328 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44389 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44450 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44511 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 44572 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44633 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 44694 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 44755 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 44816 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 44877 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 44938 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 44999 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45060 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 45121 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : AATAGCAATAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //