Array 1 162343-159621 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWW01000003.1 Haloarcula quadrata strain DSM 11927 Ga0242598_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 162342 30 100.0 36 .............................. ATCAATGTCCTTCGACGGGTCGTCGAGGTCCACCGT 162276 30 100.0 36 .............................. CAGCGCGACGTGCATGACGACGCGGCCGACGACGGC 162210 30 100.0 37 .............................. TTGCGAATCTCCTTGGTGGTCTCCGCGAGTCCGAAGC 162143 30 100.0 33 .............................. AAGAGTGGGACCGCGAAGAAGTCAAGGAGTGGA 162080 30 100.0 35 .............................. GAAGCCGGGCATCTTGCCACGGGCGAAGGACCACG 162015 30 100.0 36 .............................. TCTTGGCCGATGTGTTGACGGGGCTGGCACAGGGCA 161949 30 100.0 36 .............................. ATCAACCGGTTGCCGTCGATGATAGGCGAGCTAATC 161883 30 100.0 35 .............................. GGTCATGGTCGACTGTTTAGACGCAACCATAACAA 161818 30 100.0 35 .............................. TGGCATGGATAATCAGTCAAGCACGTCAACATCGA 161753 30 100.0 36 .............................. TCGTCGATAGTGTCGGCGCCCCACCCGCGCCCCTCG 161687 30 100.0 35 .............................. GGGACGTCACCGGCCTGTCATGGGACTACCGAGGA 161622 30 100.0 37 .............................. ACACCGACACCCTCCCCGAGTGGGTGCCGCTCGCCGG 161555 30 100.0 36 .............................. GACAACATATCACGGTTCCATCGCGGCGCCTCTCGA 161489 30 100.0 36 .............................. AGCAACACGCTGACCAGCAGCTACCTCCTCGACGGA 161423 30 100.0 33 .............................. CTCCTGATCGCGTCGGCAATCCTATCGAGGTAA 161360 30 100.0 36 .............................. CTGTTGAGACGGCCGCCGCCGTCCCGATCCCCGCAG 161294 30 100.0 37 .............................. GCTATCAACAAGCCGAGCCGAAGCGATCCCGGCCGCG 161227 30 100.0 36 .............................. GACTGGGACGACGTGGCTATCGCGTGGTCGTGGGGC 161161 30 100.0 36 .............................. CTCGAATTCCCCGTAGGAGATTTCTACATCTCGGAA 161095 30 100.0 36 .............................. CAAGACGAAGTCGTGGAGGACACCAGTCCCGAAGAC 161029 30 100.0 35 .............................. GGCAGTAGCATCGACAACGCGCAGCGGTTCGTTGA 160964 30 100.0 36 .............................. GTCTGTCATGTTGTGTCTCCGTGTTGATGTGATCTG 160898 30 100.0 37 .............................. GAGGTCGGCCGCCGCGATTGCGACGGCCTCGCCGACG 160831 30 100.0 37 .............................. GTCGTACTGTTCGACCGCCCGAACGTGGCCGTGGCAG 160764 30 100.0 35 .............................. AACCGTCTGCCCGCCGCTGTCAGGCCAGAGTTCGC 160699 30 100.0 35 .............................. TCGACGGTGGGCGACCTCACCACGCACAACGCCAT 160634 30 100.0 36 .............................. AGTCGGCACATGGTCACTCATCGACAGAATCCTCCG 160568 30 100.0 36 .............................. AGTCGGCACATGGTCACTCATCGACAGAATCCTCCG 160502 30 100.0 36 .............................. AGCCGGTCGAAGTCGTCGTGTATCTGTTGGTCACTG 160436 30 100.0 35 .............................. GCCGTCGCTCGCCGGCGATTTCGGCGAGCTTGGGC 160371 30 100.0 37 .............................. GACTAACCTCAATCAAAATTCAGTTCTGGCGTCTCGA 160304 30 100.0 36 .............................. GAGGTCGCCGAACTGCGCGAGAAAGTCGAAAACACG 160238 30 100.0 36 .............................. CACGCAAAGGAAATCACCGCCGCTCGCGAAGCCCTA 160172 30 100.0 36 .............................. AGATAGAGGCAGAGAAGGCGGTGAAAGAGACGGGAG 160106 30 100.0 35 .............................. CGTCGCGCTGGCCTTACTCTCACTGAGAACTCCCA 160041 30 100.0 36 .............................. ACCGCTCCGCCGAAGGCAGTTTACCTGTCTCTCGGG 159975 30 100.0 35 .............................. CTCGGTTTGCAAGACTTCATCCTTGAGCGCCGCGC 159910 30 100.0 36 .............................. TCCGGCCGTATACTGGCCGTGTCCTACGCGTTCAGC 159844 30 100.0 34 .............................. TGCCCCAAGACACTCCCGAGCGCGCTGTTTGCGG 159780 30 100.0 34 .............................. TGCCCCAAGACACTCCCGAGCGCGCTGTTTGCGG 159716 30 100.0 36 .............................. TGGCGGGACCAGCACAAAACGCTGAAAGAAAACTCT 159650 30 86.7 0 ...............AT.G.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 42 30 99.7 36 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Left flank : GCAGACCGTTGATCATCCGAGATTGAACAGGAAGGTGAGCTACCAGTACTTGCTCCGAGTCGAGGTGTACAAACTAAAAAAGCACCTGCTCACTGGTGAGGAGTATGTCCCGTTCAAGCGGTGGTGGTAACCATGGTGTACGCGATAATCGTCTACGACGTACAGGCCGATCGGACACCGAAATTTCTCAAATATCTCCGGCGGTATCTCACGCACGTACAGAACTCTGTATTCGAGGGCGAGCTCACAGAGGGGACGCTCGTTGAAGTCAAAGAGACCCTCCAATCAATGCTTGAGGAAGGGGAATCCGTGATGGTTTATCGGATGGACTCGGGGAGTTATGTCGAGCGATCCGTGTACGGTGACGATCCGATGGACGACCAACAATTCCTCTAGGTATTTTCGTCGACCCCCGGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCAGGCTAGAAATAGGCTGTGTCCCGGAAATCGGGCATG # Right flank : AATTCGCCCGCATCACAGTTATCGAAGGTTATCGTTACCACCGACCTCGTCTACGGCGACCGGCACAAACGGCTTAGTATTTGATCTGGTGTGATACGGATTAGTGTAGATTATTTTCAGATTACACCGGCTCCGAGGTGGGTGGACACCGGTAAATTGCTACACTACTCCGTATGAGGCATCGCGATAGAAGCGCTGTTCGCTAAACCGCTCGGTGAAATCGGCGTCCCACTGCTTGGCCTCAAGCACAGCCGCCGACAGCCCGTACATGCCCTCGGTGTTGCCGTCGCGTTTCTGTCGCGCCGCATCTCGCCGGGCGTCGGCAGACTCGAACAGCAAGCGGTCGTTGTACCCGCCGCTGTCCGGGAGTGTCGTCTCCTGCAGCGTGTCGAAGCCGAGGATATCGAGTACTTCGTCGATCCATGCACCCAGCAGTTCGTCTTCGTTGTACGACGGCAGCAGGTCGCCTTCGGCTTCCCAGAGCGCTTGGAGGTCCTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 174418-171901 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWW01000003.1 Haloarcula quadrata strain DSM 11927 Ga0242598_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 174417 30 100.0 36 .............................. AACCGAGCCCGAGTGTTGGAGCTCGTGTTTCTGGAC 174351 30 100.0 34 .............................. CGCTTGACCTGCGGGGCACTCCCGCCATGCACCG 174287 30 100.0 36 .............................. GCATCGGCGGGGTCGCCGAGGTCGTCGACAACCACG 174221 30 100.0 34 .............................. CTCGTACTGTCGCATCGCACGCATGAACGCCTGT 174157 30 100.0 35 .............................. GAACTCGGCTTTGTGCTCGCCGATGTCGATGTCTT 174092 30 100.0 33 .............................. CTTGTCCGGCTGCCGGGGTATCATCGCCGCCGC 174029 30 100.0 35 .............................. GATAGGTTCCGACGGCATACTGTTGCCTGTAATCT 173964 30 100.0 36 .............................. TTGCCCTCCGCCCACCCGTCGCCGACGGTGTCGCGG 173898 30 100.0 33 .............................. CTCGTACTGTCGCATCGCACGCATGAACGCCTG 173835 30 100.0 35 .............................. AATGCGTCCGGCGTATGCAATTGGCCGACCCCGGA 173770 30 100.0 38 .............................. CACCCCGTCAGGACCGGCGTGGCTGTTGCCCCGGCGTC 173702 30 100.0 36 .............................. GGAACCTCGTTGCCGTTCTCATCAACTTTGGTTCCA 173636 30 100.0 36 .............................. CAGCTTGCGAACGCTCACGAACCGACGGATTGGAGA 173570 30 100.0 35 .............................. CGATTACAACGCCGTCGACAAGCGGCTGACGTACA 173505 30 100.0 36 .............................. TTGTCGATTGTCGCTGTTGGGTGTGTCGCTGCTGGT 173439 30 100.0 37 .............................. TCCAACTCGTCCATCAGCATCATCGGCAGACGAACAG 173372 30 100.0 35 .............................. GATGCGCACAATCGCGAACAACAACATCCCCCTGA 173307 30 100.0 36 .............................. AGCTAGATGCCTGTCGGTATGATAAGTGGTAAGCTG 173241 30 100.0 35 .............................. GCCCGGTATACCACCGAGCGACAGGGAATCGACGG 173176 30 100.0 34 .............................. AGGCCGGACAGACCTATGACCCCTCGTCCCTCGG 173112 30 100.0 34 .............................. ACTCGGCGGGGGGTACTGACTAAGACCGCTGCGG 173048 30 100.0 35 .............................. CGAACCAAGCGGGGTGTCCGCGAAGGTCGCGGCTA 172983 30 100.0 36 .............................. CACCGCGACACCTTCCTCGAGGAGCTCGCCTGAGAC 172917 30 100.0 33 .............................. TCGTCGCTTACCACAGGCATCGAAAACGCGCTG 172854 30 100.0 36 .............................. AGCGCGAACTGTTGAAGTCACTTGAACAGAACCGGC 172788 30 100.0 38 .............................. CAGTCGTTTAACAGAGTAATTTATGCCAGAGACAACCA 172720 30 100.0 35 .............................. GGCTGGAACAGGCTCGGCGCGGAGGGATTGAGGAA 172655 30 100.0 34 .............................. GTTGATGGGTTCGGTCATGTGCTTGACTACATGG 172591 30 100.0 36 .............................. GGTGAGTTTGACGATCCGTATGTCGTGTTGACTGGC 172525 30 100.0 36 .............................. GGTGAGTTTGACGATCCGTATGTCGTGTTGACTGGC 172459 30 100.0 35 .............................. ACCGGACTATCTGGATTCAGCGCTGATGTGCAACT 172394 30 100.0 37 .............................. TACGACCGGCGGAACGGCGACGGCGGCCGGCACACGA 172327 30 100.0 36 .............................. CCCGGAGAGGACGAGCCGCCCGAGCGAGTGCGGCTC 172261 30 100.0 38 .............................. CTGTTCGTCCTCAATATCGGGGAGTGGGTCGGGCACGA 172193 30 100.0 35 .............................. TGTGCGATCAGCAGGACCGCGAGCAGGAGACCGAG 172128 30 100.0 35 .............................. ATGGTCCGCCCGATCACCGAGTCGAGATCACGACG 172063 30 100.0 35 .............................. ATGGTCCGCCCGATCACCGAGTCGAGATCACGACG 171998 30 100.0 38 .............................. CTTCAGATGTTCGAGTAGCTGTTCTTGTTCGGAGTCGC 171930 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 39 30 100.0 35 GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Left flank : GGTTGTGCTGGCCGAGACACCCTTCGAGACGCTCGCACAGTGGTGTGAATACACTCGTAGTGAGCGCGGCTGGGACGTTGGGCCGCACGTCGGTGGGTCGCTGGTCGGCGATCTTGTGCGAGGTGCTGAGGCGTGAGCTGCACCGTCGAGGAGCGCAAGCGGGTGCGACGTGCAGCGCGGGCTATTCGAGATGAGGTGGCGACTGAGTCCGTGGATGTGCTTGCGCCAAGCGCGAGCCAATACGGTGAATGGACGTTGGATGCTGTGTTGCGTGGTTCGGAGGGTGTCCCGCCAGAGGTGCTACGGGAGTTGGCGTTGGCTGGGTTGACGTTGCGGCCGACGCCGTCGCGGGCTGAGTTTCAGCACGTGGCGGCGACGGTGTAGAACAACAGTCCCACATTTTCATCGACCCCCAGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCACGCTAGAGATAGGCTGTGTCCCGGAAATCGGGCATG # Right flank : AGACGGACTCGTGTCGCAGGGAGAAATATCCCAACAGCAGACATATCCATACAACAGTTAATATAGTGGGAGTGTAGAAATTAAACGTATACAGAGCCCCTACAAGCTAATTCCACTTTTATTCCGCAAAGCTGGCATTTATTTACCACCCAACTGATATATATAGTGATATGCAAGCAACTCCTCCATGGTTGGTGATGTAACCAGTGCGGATTCTCACACGACTCTCTGCGCGAACAGACGCCGCCTACGACAACACGTACCACAACAAGCTTCAGGGCCGCATCTGGCAGGCCCTCAAAGACAGCGAGTACGACGCCCTCCACGACAAAAACCAGCCAAAACCATTCGTATACAGCAATCCCTTCCCCCCGCAGGACATGGACGAGGGTGACGAACGAACGCTCCTGGTTGCCTCGCCCGAGGAATCCCTGCTCGCCCACATCGCCGAGGACCTCACGCACGACCGGGAGCTAAATATCGGCGAGATGCCCTTCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2524787-2525083 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWW01000001.1 Haloarcula quadrata strain DSM 11927 Ga0242598_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2524787 30 90.0 37 ...........GT........T........ GTGGGTCTGGCTCGATGGCGACGACATCGACATCATG 2524854 30 90.0 36 ............T..G.....T........ CGGTCTGTGATGAGCACTTAAAAAAGCTTAACGAGA 2524920 30 100.0 37 .............................. AACATCAAGCGCCAGGCGATCAATGAGGCGCTTCGGA 2524987 30 80.0 36 ............T......TG.A....GA. TTGCACCACCCTGCGAGTGTTCCCCGAGGTGGTCTG C [2525003] 2525054 30 83.3 0 ..C......A...GG......A........ | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 88.7 37 GTTTCAGACGGACCCTTGTGAGGTTGAAGC # Left flank : TGTGTCGGCGGCGATATGCGACGTGATGGTCCCTGTCCCGACAGCAAATCCGGTCACAGCCCCTACCAGTGAGGGCGCGATTGTCACAACTGCACCGGCCGTAGCGAGCAGGAACCCAACGACCAGCGCAAACCAGACCGTGTGGGTCAGGCCACGGTGTGTCACACCCGGTATGCGTTGATCGAGATCTGGGACCATCGCGAAGCCGACCGCTGTAATCCCAGCGACGAAGGCGAGCCTGACAAACCCGATGCTGATGAGGACCGCGCTGACTGGCGTGACGAACAGTAGCGCCGCACCATAGTGGCCGTTCCGGTACATACAGATTCTACCGGAAGAGACGAGTCACAGAGTAATACAATTGTGGCCAGTGCGGAGCGCAGTGGCAAACTGGAGCGGTGTCCGTCAACCCTCCGGGGGTTCAGGGGGTATTGGCGGTCGACGGAAATAGTGAAGTGAAACCAAGCTAAAGATAGGCTGTGTCCTAGAAATCGGGCATG # Right flank : CTGTCACGTCTACCGTTTACTCCGGAAACGGTGGTGTGCCTCTCGCTGCTGACCACCAATCACAGCCAGCGAGTCGGCACATTGGTTAGACGCTCGCGATGCTCCCAGCCCATACACCAAGCACTGCACTGGCGATCCCCAGTCCCAGCAGCGCGTAGTTCGCGAGCGGGTTCTCCGCCCTGACGACGCCGAACGAGTAGTGCGTGTCGTCAACGGGACACCACGGCCGGACACCAGCCGGCGTCAATGCGTCGGCGGCGATGTGCGATTCGATGGTTCCAGCCCCGACGACGAAGCCCGCCACAGCTGACACGACAGGGCCAACAATACCGATTGCCGCCGCGACCGCCGGATGATCACGCCGATCAGCAGTGCGAACCAGATCGTATGCGTCAGGCCACGGTGCGTGATACCCGGCACGCGCTGGTTGAGATCGGGAACTATCGCGAGAGCGACCGCCGTACCGCCGCCGACGAGGGCGAGCTTGGCGAAGACGGCGG # Questionable array : NO Score: 3.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGAGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2534529-2536658 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWW01000001.1 Haloarcula quadrata strain DSM 11927 Ga0242598_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2534529 30 100.0 37 .............................. CTTGCCGAAGCTCGGCAGTGTGCCAGGGTCGATCATC 2534596 30 100.0 35 .............................. AAACCCGAGCAGTGGGACTTCGGGTGTGGTGTCCG 2534661 30 100.0 37 .............................. GACTGTTCTACCACCTCAAACTCGCCTGTCTCTGCGA 2534728 30 100.0 36 .............................. CTCGATAAACTCGGAGAGGGACCGGAAACCCGTCAG 2534794 30 100.0 35 .............................. GGGCGGGACCCGAAGCGTGTGCCAGTTATCGCCGC 2534859 30 100.0 36 .............................. CGGCGCGTCGTCTGGGACGGCATCAGGGTCTGTCGC 2534925 30 100.0 37 .............................. GACCAACTCGCCCGTGAGCCGGTGGCGGAACTGTCCC 2534992 30 100.0 35 .............................. ACACAGCGGGTGACGCTTACCGATGCCGGTGCGTT 2535057 30 96.7 35 ..................A........... ACGTCGAGCGGACCCCCGGCGAGCTGGTCGCCCGC 2535122 30 100.0 36 .............................. CGCATAGTGCTGTAATAATGGCCGCCCCGCCTGATG 2535188 30 100.0 35 .............................. TCTCGAACGCCCTCGTCGCACCTGGCGATAGAGTG 2535253 30 100.0 37 .............................. GTTCGTGGAATTGCGTTCCTGAATTGCCATAATGCAT 2535320 30 100.0 34 .............................. GACCCGAACGCTGTCGACGGGACGGCTGACGTGG 2535384 30 100.0 37 .............................. GGATACAGTTCGTTCGTCGTCGGTGCTTGAGGTTGTG 2535451 30 100.0 38 .............................. CTCTATCAACTCCTCTGGCTCAGTCGTTTTGAGTGCGT 2535519 30 100.0 35 .............................. GCGCTCGACAGCGTCGGCGGCGCATACGTCATGGG 2535584 30 100.0 36 .............................. GAGAGCAGTGGCCGGACTGTCTGGCCCCGTCGGACG 2535650 30 100.0 37 .............................. ACGCGCCACCCCGAGCGGCTTGTCGTGGGCAACGGCA 2535717 30 100.0 37 .............................. ACGCAGTGGTCCCGCGGCGGGACAAAGTGGGACAACG 2535784 30 100.0 36 .............................. GCCCGGCGGCTACGACGCCGAGGTTCAGTACACCCA 2535850 30 100.0 34 .............................. GACCAGATCGGGAGCTTTGAGATCTCTACTGCCA 2535914 30 100.0 36 .............................. GATAACCCCGGCGAAGCCGTCTCGAAGGCCCAGGAC 2535980 30 100.0 37 .............................. CAGTCTACCACGCAGAGCCCGCTGGGGAACTGGACGC 2536047 30 100.0 35 .............................. ACCTTGGGTTTGCCGCTCTAAACGTCGTTGGGCCG 2536112 30 100.0 37 .............................. CCCAGCTTGATCGCCGAGTCGTTGACTGTGGGGGTTG 2536179 30 96.7 33 ........T..................... AGCATTGAATCGGGCGGATTTTGGGCGCTCGCA 2536242 30 96.7 34 ........T..................... TCGACGAACGACAGCGAAGACCGATTTTGTTTGT 2536306 30 96.7 33 ........T..................... CGCGCCGTTGCTCGGTGACGGAGTGCTTGAGCG 2536369 30 93.3 37 ...............C...A.......... AACGGGTAAGACATACAAGCTATCACCGAGTCGCCGC 2536436 30 100.0 35 .............................. ATGTTCGTCGCCTTCTTGGCGGCGCTGGCCGGCCG 2536501 30 90.0 34 ........T.........T.G......... ATCAACAAGTCGCGGAACAGTCCGTTTTCCGAGC 2536565 30 93.3 34 ........T..G.................. TCGCTGTATGCCGCCGTCCCAAGCACGAATGACT 2536629 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 98.9 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Left flank : CAATGCGTCGGCGGTGATATGCGACGCGATAGTCACAGACCCGACGACGAACCCTGTCACAGCCCATCCCAGAAGGGGTGCGACCGTCACGAGCGTCCCGACCGGAGCGAGCAGGAGACCAACAGCCAGCCCAAACCAGACGTGTGAGTGGGCCTTGGTGCGTGATACCTGGCACGCGCTGGTCGAGATCGGGCACCATCGCGAGGGCGACCGCCGTGGCTCCGGCCATGAGGGCGAGCTCGACGAAGCCGGCGGCAATGAGGAGCGCGCCGGTTGGGGCGACAAAGAGTAGCGCTGCGCCGTAGTGGCCGTTCTGGTACATACAGACCCCATAAGAAGAAACGAGTCACAGAGTAATACGGTTGAGGCCGGTGCGGAGCGCGGTGGCAAACTGGAGTGGTTTCCGTCGACCCCCGGGGGTTCAGGGGATATTGGTGGTCGACGAAAATAGTGAAGTGAAACCGGCCTCAAGACAGGCTGTGTCCCGGAAATCGGGCATT # Right flank : CACGTACCGTATCCCGGTCGCTCCGGATGTCCTAGCAGGCCGTGCACAGCCACTCGCCGGCCAGCGTCAGCTTCGATGTGTCGGTCCCGCAGCGGGAGCAGTCGCTCGGCGCTGCGCAGTCGACATACAGCAGTTCGTCGCCGAACTGGTGGACGACGGCGCCGCGGGACGTGACGCCGCACTGCTCGCACTCACTCGGTATTGCTCGCTTCCCTGTTCGGAATCTCATCTGGATTGGTCGCATACATACCGTGACCTAGTGGCTCAACGATATCGTCTTGCTTGAGTCGACCAAGCCGTTCTCGAACGTACTGGGCCGAGTAGCCCGCTTGCTCAGCGATAAGCGGTGCGTTCGCTCGGCCTTCGCGAAGTACTTCGAGGATGGCCCAATCTGCGTCACGCATATCATCTGCGTCCATGATTGGTTCTGCTGTACTCATCTCCGTTGTAAAAGTGGTAGGCTACCGCCGTAAACCTATCGCCAATAACCTACAACCCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18046-20836 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBWW01000006.1 Haloarcula quadrata strain DSM 11927 Ga0242598_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 18046 30 100.0 35 .............................. TTTTTCGAGGAGTCGTCGTCGTCCTCGGTACTGAT 18111 30 100.0 34 .............................. CGACGACCGGAGCGCGGTGTCGCCCTCGATCGTG 18175 30 100.0 37 .............................. TTCTCTGCGATTTCCCCACAGTGAGGAGGGGTTATTA 18242 30 100.0 36 .............................. CCACCAACGATGTATCCGACTCCGGCGGTCGCAGCT 18308 30 100.0 36 .............................. TCGCCGAAGGCGTCGTCGTTGCGTATCTCAACGTAG 18374 30 100.0 37 .............................. ATCGTTGTAGTCGCCCCTCCACTTCGTCGCCCACCTT 18441 30 100.0 36 .............................. CTCGCGGTCACGCAAGAGTGTCGTACACCGGCATCC 18507 30 100.0 36 .............................. CGCCGTAGCAACGATGTCTTTCCACCCCGCCAGGAC 18573 30 100.0 35 .............................. CATCGAGAGGCCCACAAACACGGCGTGGACAGCGA 18638 30 100.0 36 .............................. GGGTCGTGTCGTCGGTTGCCGAACTTGCGGAGTCGC 18704 30 100.0 36 .............................. CGACAGGCCGGGCTTGAACTCGAAGTGATAGGAGCG 18770 30 100.0 37 .............................. GCTCGGCCGTGGCGTCGGGGAACTCCGTCGCCCCCTC 18837 30 100.0 33 .............................. CACCCACACGGGTCACGGTAGATAGTCCCGTCG 18900 30 100.0 37 .............................. CCAGCCCAGCACCTTCGGACGGCGTCGACGGGGTCGT 18967 30 100.0 36 .............................. CTGCGGTGGCTGTTTGAGTTGTACCTTCCGCTGGTC 19033 30 100.0 37 .............................. GAGCGTGTCGTTTCCGACAAGCCGGGCTTGAACTCGA 19100 30 100.0 36 .............................. AATCGTCAATGCCGCATCGGCAATTGACTCCGGTTC 19166 30 100.0 37 .............................. AACGCGATCTACTGCGACGAACCAGCGCACTATGATA 19233 30 100.0 36 .............................. GTCGTGGCCCTCCTCGTTTAGCATCGTGTCCATGCA 19299 30 100.0 35 .............................. CACAGGCGGACCGGGGCGCAATGCTCGGACACCTC 19364 30 100.0 36 .............................. ACTCTCACTAATAGAGTAGCGTCGGCGGGCCCGGTC 19430 30 100.0 38 .............................. TCGACAAACGCGACAAACGGACTTGCGCGGACGAAATA 19498 30 100.0 36 .............................. GATCCACGCGCGCTCCTCCTCGGTCAGGTCGGCCAC 19564 30 100.0 35 .............................. GAGTCACATACGACCGTGGCTTCGGGTCGGAACCG 19629 30 100.0 32 .............................. TACTCTTGAGCTACAGGTGTACCTGTGGGCAC 19691 30 100.0 36 .............................. GGTCACATCGCCCTCGCTCTTGGAGTTGCGATTCAG 19757 30 100.0 37 .............................. TCGCCGAAGGCGTCGTCGTTGCGTATCTCAACGTAGT 19824 30 100.0 35 .............................. GATACTGAACTCACTGTAGTCGATCTCCTCGAAGG 19889 30 100.0 36 .............................. GGCCGGCAGGGCGTCACTCGGGAGATGTGGCCCTGC 19955 30 100.0 35 .............................. TTCGACTGGTGCGCCCTCCCGATAGAACTCATCGA 20020 30 100.0 34 .............................. TCGTACCCATCTCGCGGCGGAACAACAACCAACG 20084 30 100.0 35 .............................. CTGTTCCGGAGCTGCCACCTCCGGGTTGTCAATGA 20149 30 100.0 37 .............................. CCAAGACAATGGTCCGGCCGGATAGCTGGACAATCCA 20216 30 100.0 35 .............................. CTTGCCCAACTCTGGGATATCGTAATTGAACCACT 20281 30 100.0 37 .............................. CGGCCGCGTCCCGTACTGATACCAGTCGATATAGTGC 20348 30 100.0 35 .............................. TGCTGTAGAGAGTGTAAGCACCAATATCAGTCTGG 20413 30 100.0 38 .............................. CGACCCGACGCTGTTCGCTATTGAAGATGTGTCACCCG 20481 30 100.0 36 .............................. CGCTGGGACCCATGCGTCACGTTCGTTTTTAACCCG 20547 30 100.0 35 .............................. GTCCGACAGCCGAACGCGACGGACCCACTCGAACG 20612 30 100.0 35 .............................. GTCCGACAGCCGAACGCGACGGACCCACTCGAACG 20677 30 100.0 35 .............................. GTCCGACAGCCGAACGCGACGGACCCACTCGAACG 20742 30 100.0 35 .............................. GTCCGACAGCCGAACGCGACGGACCCACTCGAACG 20807 30 80.0 0 .............TT.T.G.A.......A. | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.5 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : TGAGCGGACTGTCGAACACCCGGCGCTGAACCGGAAGGTTAGCTACCAGTACCTAATGCGGCTCGAAGCTTACAAGCTCAAGAAACACCTACTTACCGGCGAAGAATACGACCCGTTCCAACGGTGGTGGTAGAATGTATGTAGTAATGGTCTATGACTTGGAAGCTGACCGAACACAGAAAGCCCTCAAAATCGGTCGGCGGTATCTGACTCACGTACAGAACTCAGTTCTTGAAGGTGAGATTTCTGAGGGCGATCTCTCTAAGCTCAAAAACGAGATTGATGATCTACTGAAACCAAGTGAATCAACAATCATCTACGAGCTGTCTTCTGATACACTGCTCAATCGGACAGTCTACGGCGACGACCCAACTGAGGATCAGCGGTTTCTATAGTCGGTTTCCGTCGACCCCCCGGGGGGAAGCACCCTATTGATGGTCGACGGAAGGTATTTACTGTGACCCGCCGCTAGAAGCCTTATGGCCCGTATATCGGGCATG # Right flank : CTGCGTCATTGCTCTTGCCGTCCAAAGGTAGTGCTTTCTACGGTCCCGCGAAAAGGTGTACAGTTTATATATTCAGCCCCCGCCGCAAGAAGTATGCCTGAAATCGGGATCTACGCCCGTGTCTCAACAACAGACCAAGACCCACAGCGACAGCTTGACGAACTGCGTACATTCGCTCAAGACACATATGACGACCCAGAAATTCACGAGTATGCAGACATCATCAGTGGGACCGAGACTGACCGCGGAGACGAGTACCAGCGGCTTCGCGGGGATATCGAAGATGGGCACTTGGACACTATCGTTGTCCACGAACTCTCGCGACTTTCCAGACTCGGTGCCGGCGAGATCCATGAATTCCTCGAATTCTGCCTTAGCCACGAAACAGGCATACGGGACTTGGAAGTGGGACTGGAAATCAGCCTCGAAGATGACCTCGTCGACAGAGCGGTGAGCCAGCTTATTGCTGGAGTAATGGGCGACCTCGCGCGTGTCGAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //