Array 1 4294-3593 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000074.1 Gilliamella apicola strain A-2-24 NODE_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4293 29 93.1 32 ..A..........G............... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 4232 29 93.1 32 G............G............... TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 4171 29 93.1 32 G............G............... ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 4110 29 96.6 33 .............G............... CAAAAAGCGACGATATATACTTAAACCTTTAGC 4048 29 93.1 32 .............GT.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 3987 29 96.6 32 .............G............... AGTTCGATCAACCGACTAATGATATTACGCGC 3926 29 96.6 32 .............G............... AAAATCACGAAGTTTTACCAGTATCAGAACAA 3865 29 100.0 32 ............................. GAAAATTCAAAACTTGGATTAAACATTACATT 3804 29 100.0 32 ............................. CATTGGCGGCGTTGATTTAGATACAAATAAAA 3743 29 100.0 32 ............................. CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 3682 29 100.0 32 ............................. CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 3621 29 89.7 0 .............G......A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATAAAAATCAATAAATAATTTAAATTAACTTTATGTTTATAAAGGAAATATAAAACATTGAGTAACTAACAGTGTTTACTTGTAATGTTGATTAATAGATTTGAAATAACAAAGCTTAAATAATGGTTTTTACTTAAAAAAAATAGTTGATTACTTTAAGTTTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCCTAGATTAGGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAAATAGAGTAATTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGG # Right flank : AACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10743-9616 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000074.1 Gilliamella apicola strain A-2-24 NODE_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10742 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 10681 29 100.0 32 ............................. CTGGGATCCTTACCTTGTGCCAGTAGCTTCTT 10620 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 10559 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 10498 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 10437 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 10376 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 10315 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 10254 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 10193 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 10132 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 10071 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 10010 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 9949 29 100.0 32 ............................. GATTAAAACACGCTCGGAACATTTGAAAGATG 9888 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 9827 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 9766 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 9705 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 9644 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAAAAGCCTTACATAATGGTTTTTACTTAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACTATTTTTTTAACCAAATGAAAAATATAAACTTATTGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAGAGTTCAAAAATGATGAAAAACTAACAGATGAATACCAAAAAAAATGTCAAAACGGTGAAATTGATGGTGATAGTTTAAATTGTCAAAACTCTCGCAAAGCAGTAGTTGTACGAAATAAAGTTAGTAATGCAAGTTGGAATTAAAGTCATTTTAAAAGTGGCTTTTAAAACTTTATCTGTGGTAAGTTTTTAGACTTAAATTGATTGTTATTTATTTGAAACTTATCACTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26419-25840 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000027.1 Gilliamella apicola strain A-2-24 NODE_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26418 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 26357 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 26295 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 26234 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 26173 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 26112 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 26051 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 25990 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 25929 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 25868 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30143-29870 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000027.1 Gilliamella apicola strain A-2-24 NODE_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30142 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 30081 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 30020 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 29959 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 29898 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : ATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22995-23753 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000032.1 Gilliamella apicola strain A-2-24 NODE_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 22995 26 100.0 35 .......................... CCATCAAAGATTGGTAATTTATACCGTGTTTCCTC 23056 26 100.0 35 .......................... CCGTGATTTTTAGATGATTTAAAGAGAGCCGACAA 23117 26 100.0 35 .......................... CCGAGATCTAAATATTTTATCAAATCGGTATCAGG 23178 26 100.0 35 .......................... CCGCGAAATAATTTACCTATTGCAGTCAGGGAAAT 23239 26 100.0 35 .......................... CCGAGAAGCTAAACGAAATTTTGGACAATCATGCT 23300 26 100.0 35 .......................... CCGAGGTCCAGGCACAGACCAATTATTTAGGTCGC 23361 26 100.0 35 .......................... CCGTCTGTTCTAGACTGTCTTTCTTTTTGATAATT 23422 26 100.0 35 .......................... CCGCGTACAGCAAATATTAGATGCCTTACCCAACG 23483 26 100.0 35 .......................... CCGGACAAACTGGGCGTTATCCGCTAAATTACCCA 23544 26 100.0 35 .......................... CCGATAAAACATTATTCCAGAGTGCATTTATCCTG 23605 26 100.0 36 .......................... CCGCACTAAATTTATTAACTCAAATACACCAACATT 23667 26 100.0 35 .......................... CCGGGATTTACCAAACGAGGGTACTCGTCGTGTTA 23728 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTCGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ATCAGCTTTTACTCGTTTTTTATCTAACTAAAATCCTTTGTTGGATAAGTTATTGCTAATTTGTTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAAATATGTTAATACATATCAAGTTATACTCTTTCTTAAAGAAGACGATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3804-4808 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000033.1 Gilliamella apicola strain A-2-24 NODE_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3804 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 3865 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 3926 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 3987 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 4048 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 4109 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 4170 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 4231 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 4292 29 100.0 32 ............................. GCTGATAAAAAAAGCCAAGGGGGATAACTAAT 4353 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 4414 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 4475 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 4536 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 4597 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 4658 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 4719 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 4780 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTAAAACAGTCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGTCAACATAGTAATTTTTTGCTATTTAATAAATCCTAATTATACATTTTAATGTATTATTGTTTTTAATATCATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GTTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20742-19919 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000038.1 Gilliamella apicola strain A-2-24 NODE_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20741 29 100.0 32 ............................. CGATGGTTCCACTCCGGTTTTGTTATCATGTA 20680 29 100.0 32 ............................. CGCACAACATATAATGATATTATTAAATTAAT 20619 29 100.0 32 ............................. GCAACTAAACATAACATTGACCCAAAATTGTT 20558 29 100.0 32 ............................. GAGATGACTAATGCAACTGACAGAACATTTTA 20497 29 100.0 32 ............................. ATTGAATATCTATCCAACGATAGTTTTATCAT 20436 29 100.0 32 ............................. CATATGTTGACTGTGTGGTTTACCGCCTACCG 20375 29 100.0 32 ............................. CAAAATTTAATTGGCACACTCAAAAAAATATT 20314 29 100.0 32 ............................. ATATTCAAATAAAAAAACATGCGTTTGACATG 20253 29 100.0 32 ............................. TCTTTGTATGTTATTAATTTACCCGTTGCTGT 20192 29 100.0 33 ............................. ATATTGTTACCACAATGAAATGCGCTGACGGGC 20130 29 100.0 32 ............................. TCATTGATTTTATTATTTCTATATGTAAATAC 20069 29 100.0 32 ............................. AACATAAATTCACAGGAATAGTAGTGAAAGAA 20008 29 100.0 32 ............................. TAAACCAAATTCGTGGGAATGTTCTATCAACA 19947 29 86.2 0 ............C..........T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAAGATAAGTTAAATTATTAGGTCCTCTAAAAGATGAAATGTAAAGCTATTGGTTGTTGCACTCACGCATACTCATCAACTGGTTATTGCCATCGACATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATGGCATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGACTCTAATTTTAATTTTCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CAAATCCATCATAAACAGCCCTAGTGGCGGTTTTTCATTGCCCTTAATCTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGTATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATAGTGGCAGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGAAGATTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGTGATGGGTTTAATATAATAAGGAAGGAAGAATTCAAAATAGAAAATAATAAACTGTATACTATAAGTAAAACTGAAGTGGATGGACATACTTTTTGGGAATCGAATGATTGGGAAGAAAGTGATAGAACTATTACTCATACGGGACAAATAGTAGAGAAAAAGGAAGATAATTTAACCGAAAAATCAACCAATTCCCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAATATATTAAAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27492-25998 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNF01000038.1 Gilliamella apicola strain A-2-24 NODE_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27491 29 100.0 32 ............................. CCCTCGGTTGAGGGCTTTTTTGTTTCCTATTT 27430 29 100.0 32 ............................. TAACTCTATTTTCTAATATATCTAGTTTAACC 27369 29 100.0 32 ............................. AATTGTCTTTGATGCTATTTATAAAAAATAAA 27308 29 96.6 33 ............................T GTTGGTGCACTTAAATAACCACAGCATCGACGA 27246 29 100.0 32 ............................. TTTGCTTTCTTTATCATAGTTACGACCCTGAA 27185 29 100.0 32 ............................. CAATCGTATGCGATCACGCATGGGTAACGGAT 27124 29 100.0 32 ............................. AGGAAATAATCATTATTCGGATATGACATCCT 27063 29 100.0 32 ............................. AGTTTAAACAATCTTTAGAAACTCATGAATAT 27002 29 100.0 32 ............................. TAACTAATGCGATAATTTCATCGTCTGTTAAA 26941 29 100.0 32 ............................. GATAATAAAAAATTATCAGAGCATGATAGAGA 26880 29 100.0 32 ............................. GATTGACGTAACGAATAGGGTTAACAAATTGC 26819 29 100.0 32 ............................. AAAGCCCTTAATTTTTTAATAAATGAAAAAGG 26758 29 100.0 32 ............................. GCGGACAATGACCCGGCGAATATAAGAAATAC 26697 29 100.0 32 ............................. GAGAGTAAATGCAACAAACTTCATAGTAAATC 26636 29 96.6 32 ............................A GTTTGTCCACCAACCCAGCTAATAGGGCGTAC 26575 29 100.0 32 ............................. CGCACACGTGAAATATTAGAGGTCTTTGATTG 26514 29 100.0 32 ............................. TCAATTTAACTAACATTTGATTGCACCCTCTT 26453 29 100.0 32 ............................. TCTTTTCGCATTATCATTCGCAGATGAGTTAA 26392 29 96.6 32 .............A............... GGTGGGCCGGAGCGTTTACCAGGCTCTCCACC 26331 29 96.6 32 .............A............... AATTAGAAAAAGAAATTGATGAGTTCAAAAGA 26270 29 96.6 32 .............A............... CACGCTTTAATGCGCAAGAATCGCCAGACGGC 26209 29 96.6 32 .............A............... GGGGCGTATGGCTTGGGAGATAACACCACAGG 26148 29 93.1 32 .............A..............A CCGCAAAGTCGGATAAAATTGGAACAGCATAC 26087 29 93.1 32 ............CA............... AGCCTATCGCTATATCCCTATATGAAATGCAA 26026 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTGAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTTAGCAATATAATCAATGGGTCCATATTAGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCAGAGAGAGCTAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //