Array 1 9799-8124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOX010000040.1 Klebsiella pneumoniae strain K2 NODE_41_length_153034_cov_119.453171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9798 28 100.0 33 ............................ TCCTCCATTGTGCACCGTGGTGATTCTTCCAGA 9737 28 100.0 33 ............................ CCATAAGCGCGTCGCCAAATACCGCCGCCACCC 9676 28 100.0 33 ............................ CCGCCCACAGGGGGCGGATAGCAGTGAGAGTGA 9615 28 100.0 33 ............................ CTGCTGGCGCAGCATCAGGGCGCCGTCGACCTG 9554 28 100.0 33 ............................ TTTGTGGTCATTCTGATGCAGCGCGATGTAGTC 9493 28 100.0 33 ............................ TTAATTCAGCTGAAAAGCAGCAGGACGTCGATT 9432 28 100.0 33 ............................ TGATGTTAGTCGGTACCACGATCACGGCGGACA 9371 28 100.0 33 ............................ TCCGTAAATCTCTTGGGAGTAAGCTTCTCTTGA 9310 28 100.0 33 ............................ TAGCTTTCTCGACTGCGCGCTGCTGCATGGAAA 9249 28 100.0 33 ............................ CATATCGAAAAGCACCACGCCTGGGAGAAGAAA 9188 28 100.0 33 ............................ TAGCACCTGACAGGGTTAAGTACCTGCTGAACA 9127 28 100.0 33 ............................ TGAGCTGATTGCTCTTTTGTCTCAGGTCTTGTG 9066 28 100.0 33 ............................ TAGTTGCTCCGGCGGCGCCGGTAGAAATTTTGC 9005 28 100.0 33 ............................ TGTGCAGATCCGACAAAAGTGGTGATTTCATTC 8944 28 100.0 33 ............................ CTCGTTTTTGAACTGCTGCCAGTGCCCCGCGTA 8883 28 100.0 33 ............................ TAATTGTGGCACCAGTTATCTGGCTTTATCCCC 8822 28 100.0 33 ............................ CCCCCAATAAGGCAGCTGATTTCTTCGGCGTTT 8761 28 100.0 33 ............................ TCATCATCCAGGCGCTGCCCGGCGCGGTTTATC 8700 28 100.0 33 ............................ TGAGCATATACGAGAAAATCGCTATTTCTTGGC 8639 28 100.0 33 ............................ TAATGGCGGTGTATGGTCTGAAAAATCAATAGA 8578 28 100.0 33 ............................ TTGTTAACCCTGGCCGATGATAAATCCGCGTAT 8517 28 100.0 33 ............................ CAGCCGATACCCCGGCGGCGTCCGCGTCCTTGC 8456 28 100.0 34 ............................ CAAAACGGCGTCATTGAGGTTGATTGCGGCTGTG 8394 28 100.0 33 ............................ CAGGCCTGACGGCTCTTTCGGCAGGGCGTCGAT 8333 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 8272 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 8211 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 8150 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19190-18552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOX010000040.1 Klebsiella pneumoniae strain K2 NODE_41_length_153034_cov_119.453171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19189 28 100.0 33 ............................ CGCCCGGCAGCGGTAGATTTGATGCCAAGCTTG 19128 28 100.0 33 ............................ TAATGAAAATCCAGCCATTGTCCGCGTCACGCA 19067 28 100.0 33 ............................ CGGCTGATAATGGGTAAAAGTTTCGACATTCGT 19006 28 100.0 33 ............................ CAGGTGCGAGTTGCCGAAAATTTCGCAGGGAAG 18945 28 100.0 33 ............................ CGCGAGGATCGTTGTTCTGTCGCTCTTTCTCCA 18884 28 100.0 33 ............................ CCACGCCAGGCCAACCGGGCGGCCAGCAGTTGC 18823 28 100.0 33 ............................ CGAGCTCATTCAGTCGCTGGAGTCGGCGGGCGA 18762 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 18701 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 18640 28 92.9 33 ..........T...T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 18579 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGTCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //