Array 1 43166-43438 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRKA01000014.1 Escherichia coli strain FWSEC0284 FWSEC0284_contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43166 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 43227 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 43288 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43349 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43410 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGGTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATTGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69140-71060 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRKA01000014.1 Escherichia coli strain FWSEC0284 FWSEC0284_contig00014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69140 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 69201 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 69262 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 69323 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 69384 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 69445 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 69506 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 69568 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 69629 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 69690 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 69751 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 69812 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 69873 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 69934 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 69995 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 70056 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 70117 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 70178 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70239 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70300 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70361 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70422 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70483 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70544 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70605 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70666 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70727 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70788 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70849 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70910 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70971 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71032 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //