Array 1 72-313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDT010000104.1 Flavobacterium psychrophilum strain 97584 contig00104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 72 35 100.0 34 ................................... GAACAGCCTCCAAAAACATAATCTCCAATAGAAG 141 35 100.0 34 ................................... GAACAATCTGCAAAAGCATCCTCTCGAATAGTAG 210 35 100.0 34 ................................... GAACAACCGGCAAAAGCACCTCGATTAATAGTAA 279 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 4 35 100.0 34 TCACAGAATTAGGAATTGTAACTGATGTTAAACCA # Left flank : AGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGCAGT # Right flank : AAACAGCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 2-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDT010000107.1 Flavobacterium psychrophilum strain 97584 contig00107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 2 42 100.0 27 .......................................... ATTGAAAAAAGTACCTTCCTTAATAGT 71 42 95.2 27 ...A....................A................. GCCTCCAAAAACATAATCTCCAATAGA 140 42 100.0 27 .......................................... ATTTGCAAAAGCATTCTCTCGAATAGT 209 42 100.0 27 .......................................... ACCGGCAAAAGCACCTCGATTAATAGT 278 29 66.7 0 .A...........................------------- | Deletion [307] ========== ====== ====== ====== ========================================== =========================== ================== 5 42 92.4 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : CA # Right flank : T # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 98-2955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDT010000031.1 Flavobacterium psychrophilum strain 97584 contig00031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 98 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT T,TC [102,107] 177 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 253 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 329 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 405 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 481 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 557 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 633 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 709 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 785 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 861 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 936 46 100.0 30 .............................................. AATATGCAACTTACGGATTGTTTCTTCGTC 1012 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 1088 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 1163 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 1239 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 1315 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 1391 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 1467 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 1542 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 1618 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 1694 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 1770 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 1846 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 1922 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 1998 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 2074 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 2151 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 2227 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 2303 46 100.0 30 .............................................. GAGTTCTCAGTCATCTGTCTTTTGTCGCCA 2379 46 100.0 30 .............................................. GGCATAAAATGATTTATGAAGTCTATTTGA 2455 46 100.0 30 .............................................. ACGCCTGTCACTATGTCGTCGTATATTTCT 2531 46 100.0 30 .............................................. ATTTCATCTATTTGCCTTAACTCACTATCA 2607 46 100.0 30 .............................................. TTACAAAAGCAGAAGAATCTGATTCTTTAT 2683 46 100.0 30 .............................................. GGTTTGCTTGAGCAGTTCTTCTCTGTGAAC 2759 46 100.0 30 .............................................. TTAATTCTGCGAATGGATTATGCCGAATTC 2835 46 100.0 29 .............................................. CATTGTCAAGTTTAGAAATTGACTACAGT 2910 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 38 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDT010000078.1 Flavobacterium psychrophilum strain 97584 contig00078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1 42 97.6 27 .............T............................ GATATTGAAAATGGTGCTTTTTTCAGT 70 42 100.0 27 .......................................... ACTATTGGAGATCAGGCTTTTGCAGAT 139 42 100.0 27 .......................................... ACTATCGGAAAAGGGTCTTTTGCAGAG 208 42 92.9 27 .............T....A...................A... ACTATTAGAAGGGGTATTTTTGCAGGC 277 42 97.6 27 .............T............................ GATATTGAAAATGGTGCTTTTTTCAGT 346 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== =========================== ================== 6 42 98.0 27 TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGTGACT # Left flank : | # Right flank : GCTATTGGAGAGGATGCTTTTGCAGGCTGTAGAAGTTTAAAGACAGTAAATTGCCATATTACAAGCCCTTTAGTTATTAATGCAAATGTCTTCGGCAATATTACTCAATCAAACTGTGCTTTAAATGTTCCTACTGGTACGCAAGTCGCTTATCAGGCAGCCGCGGTTTGGAGAAATTTCAGCCCTATTTCTGGTGGTTTACTTTCTAATCATTCATTTGCAATAGAAAGTGCTTTAAAAATATACCCAAACCCAGTTTCAGAAATTTTAAACATAGCCTTGCAAGAGGGCTTACAATTAGAAAAAGTGAATTTTTACAACACATTAGGGCAGTTAATAAAAACAACTAATCATTCAGAAATAAACGTTTCAAGCTTTGCAAAAGGAAATTACTTTGTAGAAGTAAT # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : TGTTCTGGTTTAATATCAGTTACAATTCCTAATTCTGTGACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 434-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDT010000092.1 Flavobacterium psychrophilum strain 97584 contig00092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 433 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 364 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 295 41 97.6 28 .................................T....... CCGCCAAAAGCACCTCGATTAATAGTAA 226 41 97.6 28 ....................................G.... TCTGCAAAAACATAATCTCCAATAGTAG 157 41 78.0 0 ................G..G..C.........TT.TTG..T | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 94.6 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TTGTATAAAAGCAGATTCTCCAATAGCAGTCACAATATAGTTTTTTGAATTATAAGCTACTGTTTCTGGTATTACCGCAACTCCACTAAAATCAGGGTTTCTAGCTACCTTAGCAGT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 405-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDT010000096.1 Flavobacterium psychrophilum strain 97584 contig00096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================= ================== 404 40 100.0 29 ........................................ ACCGGCAAAAGCACCTCGATTAATAGTAA 335 40 100.0 29 ........................................ ATTGAAAAAAGCCTCATCTCCAATAGAGG 266 40 97.5 29 ......................A................. GCCTCCAAAAACATAATTTCCAATAGAGG 197 40 87.5 29 .............G..G.....G.........T...G... ATCGGAAAAAGTATAATTTCCAATAGTAG 128 40 77.5 0 .......G.....G..G.....C.........TT.TTG.. | ========== ====== ====== ====== ======================================== ============================= ================== 5 40 92.5 29 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //