Array 1 3542640-3545288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072825.1 Klebsiella pneumoniae strain IRQBAS103c chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3542640 29 100.0 32 ............................. CTGCTGACGACGTGGATCCGCTGGAACGTCAC 3542701 29 100.0 32 ............................. GCCTCAATATTACCGGTGGCTGGCGCTGGGAT 3542762 29 100.0 32 ............................. TACTGGCAACGGAATTCGGTTCGACGTTTATG 3542823 29 100.0 32 ............................. CGCTCCCCAGGACAAACGCGGTCTCCGGATCC 3542884 29 100.0 32 ............................. TTGCACGCACGTGAATAGTCCAGGCCGCCTGG 3542945 29 100.0 32 ............................. TCCAGCGTGTGCATCTCGCCGATCTCTTTTTG 3543006 29 100.0 32 ............................. TCTTGTTAGTGATTGAGTAGCCCATCTGGGAC 3543067 29 100.0 32 ............................. CTACCCGTAAAAAAACCGCTGCCGCTGTCGCC 3543128 29 100.0 32 ............................. CTCTTAATGGAATTCGTGAAGACGCTGGCCTT 3543189 29 100.0 32 ............................. ATCTGGCGAGATTTTACGGGAAATAATATCCC 3543250 29 100.0 32 ............................. GTTTTGACCGAGTATATCTGGCGGGATACCCC 3543311 29 100.0 32 ............................. GTCCTGGCTGACCCGGACGAATTTGTTGTGAT 3543372 29 100.0 32 ............................. CATCCCCTGCAACCTGTTCAAAATGTGCAGCA 3543433 29 96.6 32 ............................T GGCACCCCATCATCTCCCATCGTCACCTTTAC 3543494 29 100.0 32 ............................. ACGCGGGAAAACCACTGCGATCCCTCATCGCT 3543555 29 100.0 32 ............................. CAGCTGGCCGTTTTGATATGGACGACGCGCAA 3543616 29 100.0 32 ............................. TGCCAGCCAGCTTTGCGCGCCTGCTGAGATAT 3543677 29 100.0 32 ............................. GAGGTGAAGTTATGCCGCGAAACTCAGATATC 3543738 29 100.0 32 ............................. CACGGTTTTCAGGAATTTAACGAGAACCAGGC 3543799 29 100.0 32 ............................. CGCAGGCGTGTGCCGTCAATGTCGGCGCCATA 3543860 29 100.0 32 ............................. CATATTAAACTCATTGTTGCCGGCGCAGAATT 3543921 29 100.0 32 ............................. CATTTTATGGCTGTTCAAAATTGGCTATAGTG 3543982 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 3544043 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 3544104 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 3544165 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 3544226 29 100.0 32 ............................. TCTTCGAGTTCAGGCCGGTATCCCACTCGCTC 3544287 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 3544348 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 3544409 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 3544470 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 3544531 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 3544592 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 3544653 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 3544714 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 3544775 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 3544836 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 3544897 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3544958 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 3545019 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 3545080 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3545141 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3545202 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 3545260 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCTTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5291811-5292753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072825.1 Klebsiella pneumoniae strain IRQBAS103c chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5291811 29 100.0 32 ............................. GCTGTCAGTACTCAACGTTATAGAAATTCCTC 5291872 29 100.0 32 ............................. GAGTGAAAGTGATAGCAAGAGTGTAATGGCTA 5291933 29 100.0 32 ............................. GCAACTATTGCCTGCATTGCTGTAGACAAATC 5291994 29 100.0 32 ............................. AATCAATACGCCCTGATGCTTAAAAATGGCCG 5292055 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 5292116 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 5292177 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 5292238 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 5292299 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 5292360 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 5292421 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 5292482 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 5292543 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 5292604 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 5292665 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 5292726 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTCGGGTTCTACATCCATGGCCT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //