Array 1 11-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000002.1 Haloferax sp. AS1 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11 30 100.0 35 .............................. GAAAGAAAACGGATGCCATGACTGAGACTGGATGT 76 30 100.0 37 .............................. CAGCTCGGACAGGGGCGCTCGCGCAACCAGACCGACG 143 30 100.0 35 .............................. GGCGAACTCATCATCCAAGAGTTCATCTCGCGGTG 208 30 100.0 36 .............................. AACACGGTCGGCGTCTCGACGGGGGCGAAGAACCGC 274 30 100.0 36 .............................. GCTCTCGGACGGTGTCTACACCGAGATGCTCCGGTG 340 30 100.0 36 .............................. TGCTCGTGGTACTGAGTGACCGTGTGCCGGACGTCG 406 30 100.0 35 .............................. TGCATCACCGCGACGTCGCCGCCGCCCTCGTAGGC 471 30 100.0 34 .............................. GGCACCTACGACCGCCGCTACAACGACGACCCGC 535 30 83.3 0 .......G.......G......A..A..T. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.1 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCAACCACTG # Right flank : CGAAAACTCGTCGGGACGAAACCACGCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 286742-287035 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000002.1 Haloferax sp. AS1 Scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 286742 30 100.0 35 .............................. GTGGAAGACAGCACCCCGTGGGCACCGGGCTTCCG 286807 30 100.0 38 .............................. GGGAGGTGTGGGGCGAATGAACCCAGAGCACGACTCCG 286875 30 100.0 35 .............................. GAGGGTTGCCACCGAATTATCTGATATCGTCAAAT 286940 30 100.0 36 .............................. TCTCACCGAGCCACTCCTCGGCCACGGAGTCGAGCG 287006 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAACTCACGGGCGAGGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGGTTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : CGCCTTGTACCAAACGTCGCCCGAAGTTGTCTGAAATGTTTCAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGGGTCTGGGTCGGCCCGGCAACCAGCAAAAAAAAGAGGGCTGCCTCGCGCCGTTAGGCGTCCCACCAGGCGTCACGCTCGGGGAACATCACGGTCGTCCACCCCGTCAGCGCAATCGAGACACGCCCGTCGTACCAGTTCCGCGCCGCTCCGTGAATCCGCACGCGTTCGCCCTCGCGAATCCACGGCACGTCCGAGGCCTTCCAACTCGTCAGCTTCACCTGCCCGCTTTCGTCTTCGAGGAGCCCCGCTTGACTACAACTATCAAAGACCGCATCAAGCGCTCGATGGACGAACGCCAGTCGAGGAGGTTACTAACTAGACAGTGCCCATTTTAGGGCACTGTCTAGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 320869-320708 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000002.1 Haloferax sp. AS1 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 320868 30 100.0 33 .............................. GTCCGACGAAGATAGACGGCGTCGAGCACGCCC 320805 30 100.0 38 .............................. ACCGAGCGAGTCACCGAGAAGCCGGTCGAAGTCCGAGG 320737 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : AGCCAGTTTGAGGAACGAGCAGGTCGTTGAGTGTGTTTGGGATGGAGCTCGCAGACCTGCTCGATTGAAGCCATCTGGTTTTGAGTCGTCCGTATAGGAGACGGAGAGTTTCAGACGAACCCTTGTGGGATTGAAGCATCCTCCGGCGTCTCGCGTGCTTGCCGGGTTGCTTGTTTCAGACGAACCCTTGTGGGATTGAAGCACTCGTTGGTCAACGACCGAGCAGAATCGCTCGTCGTTTCAGACGAACCCTTGTGGGATTGAAGCGAGGTCCACGGGACCGACGGCAACGTTTACGAGAGTTGTTTCAGACGAACCCTTGTGGGATTGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGACGAACCCTTGTGGGATTGAAGCAAAGCACTCGTCAAAGAGATCGACACCCGCGACCGGG # Right flank : TCGACCGGTGACACGGACGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACAATTTTCAGAGACCACATCAAGCGCTCGATGGGCGAACACCGGTTGAGGAGGTCACTAACTAGACAGTGCCGTACAGTTGGCACTGTCTAGATAAGGAACGAGCAGGTCGAAGAGTTAGTGATCTATGCTACTCTCAAACCTGCTCAAAGAGAGTTTAGACACTGCTACGTTTGAATGTTGGCAGCGCGAGCGGACGGCGAACGCCCTGACGGGCGTCCTCAGAACGCTTCGCGTTCTGATGGGTTGCACGAGAGCAAAGCTCTCGTGAACGTCGCGTCCACTCATGCATCCAAGTTTCTTTTAAATCCGCCGCAAAGCACTCGCTGACCAGGTCTGCGAGCTTCATCCCAAATTAACTCAACGACCTGCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 321262-321035 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000002.1 Haloferax sp. AS1 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 321261 30 100.0 35 .............................. ATCCTCCGGCGTCTCGCGTGCTTGCCGGGTTGCTT 321196 30 100.0 35 .............................. ACTCGTTGGTCAACGACCGAGCAGAATCGCTCGTC 321131 30 100.0 37 .............................. GAGGTCCACGGGACCGACGGCAACGTTTACGAGAGTT 321064 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGATAATGGGTTGATTAGTAAGGGGTACGGAGATGCCGGTCCCGCGGACCCGAACCAAGTGATTATAGAAGATTATCCGACTGATGACAACGTCTGGGATGTCGGTGAAACGATTCAATTCGAAATAAATGTCGGTGAAGCCGACTTCCGAAGCCAACCCGATAGGACAGGCCCAAACGCGGATAAACTCGAAATCACGATTGTTCATACTGAGTCAAACGCGATACTGTTTGAAGAGGTGTTTAGACCCTAACTGGTGAAGGATCGCACACAACTGTCTTGATATGGAACTAGTGGTTTCACACATTGGTCAGTAAACCTCCTGTACTGACCGCAACCGGATCAGAATCTGTCACTTTCTAAGGATTTCAACAGAGCGGCACTGTCTAGTTAAGCCAGTTTGAGGAACGAGCAGGTCGTTGAGTGTGTTTGGGATGGAGCTCGCAGACCTGCTCGATTGAAGCCATCTGGTTTTGAGTCGTCCGTATAGGAGACGGAGA # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGACGAACCCTTGTGGGATTGAAGCAAAGCACTCGTCAAAGAGATCGACACCCGCGACCGGGGTTTCAGACGAACCCTTGTGGGATTGAAGCGTCCGACGAAGATAGACGGCGTCGAGCACGCCCGTTTCAGACGAACCCTTGTGGGATTGAAGCACCGAGCGAGTCACCGAGAAGCCGGTCGAAGTCCGAGGGTTTCAGACGAACCCTTGTGGGATTGAAGCTCGACCGGTGACACGGACGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACAATTTTCAGAGACCACATCAAGCGCTCGATGGGCGAACACCGGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2440600-2439312 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000001.1 Haloferax sp. AS1 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 2440599 30 100.0 38 .............................. CTGACCCATGTCACCAGCACAAACACCCTACGAGCATC 2440531 30 100.0 37 .............................. GACTGGCCGCCCGGTCAAAGCCAACGACCACCTCGTC 2440464 30 100.0 36 .............................. GAGGACGTTGGTCGCGGGCGGCATCAGTCGTCACCC 2440398 30 100.0 45 .............................. TTGCGCAGGTGCGTCGCCCCGGTCGCGGTCGCGTCGACGAACAGC 2440323 30 100.0 34 .............................. GTTTGGGACCTCTTGCGGACTCGTGACGCGACTG 2440259 30 100.0 36 .............................. ACACAAAGTCCGAATCCACCGCTGGAGTGTGCGGGT 2440193 30 100.0 36 .............................. TAAGAAGGTGTCGAGATCGTTCCAACCACCCCATGA 2440127 30 100.0 33 .............................. ATACCAAACTAAGATAGTAGCGGTAAGTAGACT 2440064 30 100.0 35 .............................. ACGCACGAGGTCGGAGTACGTGATGCGCTCGTAGG 2439999 30 100.0 36 .............................. GCTGGAACTCGCGGCGGGACACGTCGGGGAACGTCA 2439933 30 100.0 34 .............................. AGCTCGTCGACGGTCGGTCCGGTCGCCTCCGAGT 2439869 30 100.0 37 .............................. GCATGGCTTGCGTGGTGTTTAGTCATCATCTGTCTGT 2439802 30 100.0 36 .............................. TTCGAGCGCACCGGCTATCCCGTCCAGGTCGTTATC 2439736 30 100.0 37 .............................. ACCCTTTTGATGGGTGCGGGGGTATCCGTGTCCGGGC 2439669 30 100.0 34 .............................. GAAATGTTGAGGTTGAGGCGGGCGAGACGGTCGA 2439605 30 100.0 35 .............................. GAGCTTCCGCATCGAGTCCACCGCCGTTGGCGTCG 2439540 30 100.0 37 .............................. TTGGAACTCGGCCGGGCAGTCCTCGACGCACTGCCGG 2439473 30 100.0 37 .............................. TCGGCCGGGTGTTGGTTAAGACCGACGAGAATCACTT 2439406 30 100.0 35 .............................. TCGAAGTCGATGACTGCCTTGACGAGTTGTTGCTG 2439341 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ============================================= ================== 20 30 98.8 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTTCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2797239-2796292 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000001.1 Haloferax sp. AS1 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2797238 30 100.0 34 .............................. GGCAAGCCGGTCGAAATCGTGGAGCATGACGACC 2797174 30 100.0 35 .............................. CCCGGCGGCGACGTGACGGCGTCGGTCTACGAGCA 2797109 30 100.0 33 .............................. GAGCACGTCGGACGACGAGGACGGTGGAGACTC 2797046 30 100.0 35 .............................. GACCCGTCGCAGGGCTGGATAACATCTGCAAGATA 2796981 30 100.0 37 .............................. ACGTTCTATGCCTCGGATAATGAAGTCGTTCTGACTC 2796914 30 100.0 40 .............................. ACGCAGATGATCGCTCCGATTGCGGTCAGGGTGTGTGGGA 2796844 30 100.0 34 .............................. CACTGCTCGCGCGGATTGAGCAGATCTGAAATGA 2796780 30 100.0 35 .............................. TGCGAGCACCATCAACGGCTTCGTCGAAGACGGCG 2796715 30 100.0 36 .............................. AGTCAGGCGGTGAGAAGAAGCATTTAATAGAGAATC 2796649 30 100.0 36 .............................. GGCCACGAGGGGTTGCCGATGACCGTCCGCCGGGGT 2796583 30 100.0 36 .............................. TGTTGCGGACCCATCTTGTGACCCGAGTCGTCCCAC 2796517 30 100.0 37 .............................. CTGACTCGAATACCGCTCATACACAAGCGTGTAATCG 2796450 30 100.0 35 .............................. CGCAACCAACGCTGGCCTTGCGGGGACCTATTGCA 2796385 30 100.0 34 .............................. ATGTTCGCGGACTTGGTCGCGTCCGGGAACGGCT 2796321 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 100.0 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAGCTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTCCTCGAAGGCGAAATTTCAGAGGGTGATTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATTATCTACGAACTGTCTTCTGACACACTTCTCAACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGAGTTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCACCCCTCAGAGAGTCTGTGTCCTCGATATCGGACATG # Right flank : TCACGCAAAGGCTTCTGGGGGGTGGCTCGCGGTTGAGACAGACGACGCGCCGGGCGTGGTCGGTGACTGCGCCGAGGTCGTGGTCGATGAGGAGAATCGTGATGCCCTCCTCGTTGAGCGATTCGCGCAGGTCGTAGAAGGCGTCGACCGACTCGACGTCGACGCCGCCGGTCGGCTCGTCCAAGACGCGCAGGTCGGCCTCGCCGGCGCGCGCGCGGGCGATGAAGGCGCGCTGGCGCTGGCCGCCCGAGAGCTTCGTCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGCGAGGCCGAACGCGACGAGCGAGCTGTCGCGCATGGCGTTGACGTGGGCGAACAGGTCGGTGTTCGGGACGGCGGCCGCGAGGTTCGGCGTGTCCGACAGCGGCGACTGTGTGTCGCCCATGTACGCCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2807919-2807626 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPSA01000001.1 Haloferax sp. AS1 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2807918 30 100.0 36 .............................. GTTCGAGAGTGGCTTGTCCTTGCCGCCGGTCGTCCC 2807852 30 96.7 35 .....................A........ CCCGATATCTCCCGGTCGGAGTTCCGACGAATCGA 2807787 30 100.0 36 .............................. GACGGGATGCGGATGGTCGAGTAAATCGTCCCATAG 2807721 30 96.7 36 .............................T CGGAAATAGTCGGTTCTCGGAAGCTGTTTGACTACG 2807655 30 90.0 0 ....................A.G......T | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TAGTCGCGTCATACATCGTTGGTGCTCAAG # Right flank : GAGCCCGAGTGGACGGCCGTGCTTCTCAGTGGCGAGGTTCAGCAGAAGCCGTTGTGTAGAGAAACTGAAGCGGTTCGTCAGTAGAATCACTCAAATATTTGCATGGGACCAACCGCTGTTAAAGACCAACAATACACAATCCTGTATAGAACTTAGATTACTTCAGAGATAACCGGGATTTTGAGTTCGGATATAGATAGGATACACAGACGTGCATAGATATAAGTGAGTGGGGTAGTATAGGTTAAAGAGGGCGCTGTTGACACGCCCGGCCAGAATACCAGTTCCACCGGACGTGTAAACCAACCCGGCAACCAGTAGTTTGACTCAGGGCTGCACGAGCAGGCAGTTGCTCGTTGCCCCTCGTGAGTCTTATCTGTTTGGTTGCTAGGTAGCCCCCTCCGCAACAACGATGAACCAAACAACACATACAAAACGAGGTAAGGTGTGTGTCACCAATGACCAGTTACAACTCAGTCATAAACTAATTAGCACGCTTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //