Array 1 59231-59625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEN010000037.1 Escherichia fergusonii strain C8-4 c_000000000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59231 29 100.0 32 ............................. AATCTCTGCCGGGCTTTCGCCGTAGCCAAGAT 59292 29 100.0 32 ............................. CGCGATTTGTTAGCGCCCGTCGTGCTTGGTGG 59353 29 100.0 32 ............................. GTTAAAGAGTTCGTTGGTGTACCGGAGTTCAA 59414 29 100.0 32 ............................. CCGTGTTTTTTAACTAGCGCAAGCAGCATTGA 59475 29 100.0 32 ............................. GGTAAAACGCGAGTGAGAAGGGGCGCGAAAGG 59536 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 59597 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATTATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTATCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67749-68448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEN010000037.1 Escherichia fergusonii strain C8-4 c_000000000037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67749 29 100.0 32 ............................. CTCCGTCGCCATTAATTTCGGGGTACATTTGT 67810 29 100.0 32 ............................. GAAGAATATGCAGGTTCGCATGAAGATTTTGA 67871 29 100.0 32 ............................. TTATTGAGATTGCAAAGTGGAACTCGGCGCAG 67932 29 100.0 32 ............................. GCGACGGGGCGTTTACGCTTGCGAGCATTAAT 67993 29 100.0 32 ............................. TTTACGGTTAGTGCTATTAACCGTAGTAGCGA 68054 29 96.6 32 .A........................... GAACAGAAATTCGTTTCCAGTGGTGGTGTGGA 68115 29 96.6 32 .A........................... GAGAGTTTGGACGGCATCCCTGTTGGTGCGTA 68176 29 93.1 32 .A..........G................ TAATCATAGGGTTTGCGCCGGAAATAGGTGCA 68237 29 93.1 32 .A..........T................ GGAGTTCAGACATAGGTGGAATGATGGACTAC 68298 29 89.7 32 .A..........TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 68359 29 89.7 32 .A...............A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 68420 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGGCTTCTGGGGCTGAGTAACAAAATCCTGCTAGCCGATGAGATCCACGCCTGTGACGCTTATATGTCGTGCATTCTTGAAGGGCTGATCGAGCGGCAGGCGCGTGGCGGAAACAGCGTTATTTTGCTTTCTGCTACGTTGTCTCAACAGCAGCGTGACAAACTCGTCGCCGCCTTTGCGCGTGGTGCAGAGGGCCAGCAAGAAGCTCCGTTGCTGGAAAAAGATGATTATCCCTGGCTGACGCATGTCACGAAATCCGATGTGCATTCGCACCGGGTAGCGACGCGCAAAGACGTTGAGCGCAGCGTGAGTGTGGGTTGGCTTCATAGCGAACAAGAGTGTATTGCGCGTATCGAATCGGCGGTAAGCCAGGGGAAATGCATCGCCTGGATTCGGAATTCTGTCGATGACGCCATCCAGGTTCATCGTCAGTTACTTGCCCGCGGCGTCATTCCTGCTTCCAGCCTTTCACTTTTTCATAGCCGCTTTGCTTTTAGC # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //