Array 1 102776-102922 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRI01000016.1 Gallaecimonas xiamenensis 3-C-1 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102776 29 100.0 32 ............................. GCCGCACTTCTGCGGCCTGGTTGTAATGCTCA 102837 29 100.0 32 ............................. CTGATGCGGATAGAGCAGGGCGCCGAAATGGG 102898 25 86.2 0 .........................---- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GCGTTCCCCGTGCCCACGGGGATAAACCG # Left flank : AGGTGCTGGCCGCCGGGGAAATAAGCCCGCCGCCGCCCCCGGCCGATGCCCAGCCTATCGCCATTCCCGAACCCAAGCCGTTGGGCGATGCCGGCCACCGGAGCCAATAACATGAGCATGCTAGTGGTGGTGACCGAAAACGCGCCGCCAAGGCTAAGGGGCCGCTTGGCCATCTGGCTGTTGGAGGTGCGGGCCGGTGTCTATGTAGGGGATGTCTCCAAGCGGGTAAGGGAAATGATCTGGCATCAAACCCGCCAGTTATTGGAAGAAGGGAATGCAGTGATGGCCTGGGCCACCAACAGCGAGTCGGGTTTTGAGTTTCAAACCCTCGGGAAAAACCGCCGCGAGCCGGTAGATTTGGATGGCTTACGGCTGGTCTCTTTCTTACCCATTGAAAATCAATGAGTTAGTGCTCTTTAACAAAATGGATTTTGTGATAAAACCCTGGTGGATTTTTTAAGGCTGAAAAAGGCTTTAAAAAACAATACTATCCATTAAGA # Right flank : | # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTGCCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-789 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRI01000011.1 Gallaecimonas xiamenensis 3-C-1 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 91 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 152 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 213 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 274 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 335 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 396 29 100.0 32 ............................. ACAGAGGATTTCGAGGCGGCCACTGGCATAAA 457 29 100.0 32 ............................. TGTTACTGCGTATAATGTATATATAAGTAAAT 518 29 96.6 32 ...........................T. CGGTGCCACTGTCCCAGTCGGGGGCTCCGGCC 579 29 100.0 32 ............................. AGTTGATCCGGTCTGCCTACCTGGCTGTTGAT 640 29 100.0 32 ............................. GAAAGCGACGCCAGCACTATGGCCTTTGCCAT 701 29 100.0 32 ............................. GGTCCCAGATAAAGAACAGGCTGCCTTTGTTG 762 28 86.2 0 .....................-C...T.T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GCGTTCCCCGTGCCCACGGGGATAAACCG # Left flank : ATTTTGACCACCTCTTCGCGGCCATCGATG # Right flank : TTACGCCGCTGAATGCTTTTGACGACGTGTTGCTCCCCGCACCTGCTGGAATGAGCTGGGCCACACAAGTATCCTGTTTATCTGGCCGGAACTTTCTCGCTCACGGTGAAGGTCAAAGAGCTCTCGAGGGCTTTGGCTCTAGCAGAAATCTCATGCTTGCGGATCTTCCTATACCCACCAGGCGGTGTGTTTTCTTACGTCATCCTTAGGGCATTCACTACCACCTTAAAAGCCGCAGTCTGCTGGCGCCGGCTGGGGTAGTAGAGGTGGTAGCCGTCAAAGGGCTCGCACCAGTCGGCCAGTACCTCCACCAGCGAACCGGCTTCAATATGAGGCTCCACCAGGGCATTGGGCAGTTGCGCCAAGCCAGTGCCAGCCAGGCAGGCGTCGAGGATTTGCAGGGAGCTGTTCATAATCAGCGGCCCGCTCACCCGCACCCGAGACTCCTGGCCGGCCTTTGAAAACTCCCAGGCATAAAGGCCGCCGTGGGTGGGCAGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTGCCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRI01000059.1 Gallaecimonas xiamenensis 3-C-1 contig59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. GCCCAGAGGGAGTGGGGCACCAGGATGGAGCT 92 29 100.0 32 ............................. CCATCACAGAACCCATCCGGCGTGAAGGTTGG 153 29 100.0 32 ............................. CGCCATAGCTGTGCCAGCGGCCCTAGGCGCCA 214 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 275 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 336 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 397 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 458 29 100.0 32 ............................. ACGACCTGGGCGCACCTGACCTCGGCCAGGAA 519 29 100.0 32 ............................. CTCATCAAAAAACGCCAGGTTGCTCGATGCAT 580 29 100.0 32 ............................. GCCACTTTCGGGTGGCCTTTCGTTTGCTCCAA 641 29 100.0 32 ............................. TGCTAGATATGTTTTATGACATTCCGTGCATA 702 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GCGTTCCCCGTGCCCACGGGGATAAACCG # Left flank : TGCTGGGAGTAATAGGGTGAGGGGGGACTTG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTGCCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRI01000065.1 Gallaecimonas xiamenensis 3-C-1 contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. TTGAGGTAACAGTGTGGCTACCGGGGCAACCA 88 29 100.0 32 ............................. CCATCATCAAGGTAGCCACCGGATTTAACACA 149 29 100.0 32 ............................. ATGCCAGCGACCAGGGCATTTTCTACGGCTCT 210 29 100.0 32 ............................. TCGTACTGCGCATAATGTATACATAAGTAAAT 271 29 100.0 32 ............................. GGGTAAATCATGCCTGCTTTAGTTATGGCCGG 332 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GCGTTCCCCGTGCCCACGGGGATAAACCG # Left flank : CTTTACCAGACCATTTATTTAAAACAG # Right flank : GTAACAATTCAACTGGTCGAGACCACCATGAGGCGTTCCCCGTGCCCACGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTGCCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-242 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRI01000066.1 Gallaecimonas xiamenensis 3-C-1 contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. CCAAATATCATTTCCGCTATCACAAAAAACCA 92 29 100.0 32 ............................. GTTGGATAATAAAAAACCCGCCTTGAAGGCGG 153 29 100.0 32 ............................. TTGCAGCACTGCAACTTCAAGGGGGCGTGATG 214 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GCGTTCCCCGTGCCCACGGGGATAAACCG # Left flank : CAGAGTCAGCATCGGCGCGAGCTGTCGACTG # Right flank : GTTGATGCCTGGTGGTATCGCGGAAAAAACCTGCGTTCCCCGTGCCCACGGGGATAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGTGCCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //