Array 1 577982-575556 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN046798.1 Francisella philomiragia strain FAJ scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 577981 37 100.0 35 ..................................... GTAATGAGGAGGCTATGAATGGTATTAGGGCAGCT 577909 37 100.0 35 ..................................... ATATTTGATTATGGCCAACGAATTTGCGGAACGGT 577837 37 100.0 36 ..................................... AATTCCTGCACTAAAAAATAAAAAATATAGTTTGAA 577764 37 100.0 35 ..................................... TTCAAAACTTCTGATACTAAAAATTCTTGATAAAT 577692 37 100.0 36 ..................................... TAAGTATAGTTGGCTTAACAAGCTTCCATTCATCAA 577619 37 100.0 36 ..................................... TTGGTTCGATCTTTAAAACTCTTGCTAGTTCAGCTT 577546 37 100.0 34 ..................................... GCTAGATGGTTTATGGGTGCATCAAAGCCAAGTA 577475 37 100.0 35 ..................................... GTGATAGCACTGTTTTAAGCACCAAAGAAAGATAT 577403 37 100.0 36 ..................................... ATTAGTACTTGATGATGTTATTGTCGGTTTCATGGA 577330 37 100.0 34 ..................................... TTTTAAATATGTATTTTCCCTGTGGAAAAATATT 577259 37 100.0 37 ..................................... TAGTAAGTACCTTTTTGTTAGGTTTCCATTCAATGGA 577185 37 100.0 36 ..................................... AGATGATGTGGTAGGGGATGTTAAAAGAATGATTCT 577112 37 100.0 36 ..................................... TAAAGATGTGGGTTTCTGCGAGCTAGATCCTTTTGT 577039 37 100.0 37 ..................................... GGTAAGCATTTTGAGTGTTAGTTTGTGTTGCTGATTG 576965 37 100.0 35 ..................................... ATTTATGAGGGTGATATTGTTATTAGAGACCTCGA 576893 37 100.0 35 ..................................... GATTATGATTTGTATTACAAGTTTCAAAGCGTTCC 576821 37 100.0 37 ..................................... AACACATTATTGCTTTTGTACCCTCTTCGATATGATT 576747 37 100.0 35 ..................................... CTTATATTGACTGGCAATGCTCAATTTAACTTTGA 576675 37 100.0 34 ..................................... CCATGACGGCAATGCTTGGGTTTCCGGCAATGCT 576604 37 100.0 36 ..................................... TTTAGAATCTCGACAAAAAGGCGGCGGTACTATTGT 576531 37 100.0 34 ..................................... CTTTCACTGGCACAGCTCAATCTGCTATTGCTGT 576460 37 100.0 35 ..................................... CCAGTAGCAACGACACCGCTAGCATGATCTTCTAA 576388 37 100.0 35 ..................................... ATTTATGAGGGTGATATTGTTATTAGAGACCTCGA 576316 37 100.0 35 ..................................... GATTATGATTTGTATTACAAGTTTCAAAGCGTTCC 576244 37 100.0 36 ..................................... AGAAAATGTACATAAAGAAGTAACTTGCAAATATTT 576171 37 100.0 36 ..................................... CAATAGCAGTTTAGCCGTTGGCACATGGATAAATAA 576098 37 100.0 34 ..................................... AAAGAAAGACAAATGATTAATATTGGTAAGTTGG 576027 37 100.0 37 ..................................... GTTTAGTTTCTACAGCTAATAATGTAACATCGCTTGG 575953 37 100.0 34 ..................................... AGAACATTGCCAGTTTAAGATAACGCTGATAGAA 575882 37 100.0 35 ..................................... CGAGATGGCTTAGTTTTCTTAATCATGGGCTTTAC 575810 37 100.0 36 ..................................... CAAAAGAGCAATGATTGCATGGTTCCTAAATTTTTT 575737 37 100.0 35 ..................................... CAAATTGAGGATCAACTTCAACTAACATATGTATA 575665 37 100.0 36 ..................................... AATTTTACTCGCAATTAGGGTTATATTTTTTTAGGT 575592 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 34 37 100.0 35 GTTTCAGTAGCTAGAATATTTGGTATACTACTGTTGG # Left flank : CATTTTGGGCCAATCATAGTAAAAATGCTGAGTTTATATCTGAGCTAATAAACTATATCTATAGCAATAGCGACTATACGAGTATTATAAATAATGATCTTGCTTTGGTTGGTTTCTCTGCTGGAGGATTAGCTACTTTGATAGCGACATCAGAGAATACTAGGGTCAAGCTTTGGATAGGATTAGACCCTGTAGATGTAGGCAATCTTGGCTCTCAAGCCGCCAAGAATATAAATTGCCCAACCTATATAATAGCTGCCTCAGCAAGCGCATGTAATGCCAATAACAACTACAAAAACTTCATAACAAATCTAAAAGAAAACAATCTTATCAAAATTGATGGAGCTGTACATGTCGATGCTGAATGGCCAACTAATAGATTCGCTGAGTTGTTCTGTGGTAGATCCACACAGCAAAAAAGAGAAAGATTTCATGATGATGTGTTGACGATTTTGGATAAGAGTTTTAAAAATGAAAGCTATATACAAAATATAAAATGA # Right flank : AGCCAAAATAAACCTAGAGTTTATAAGGCTTTGCGAGAATAATTTATTGGTGTTTTTTCGCAAACACCCTACTTGTCAAAAAAAGTAGACATTTTGCGAAAAAGTATCTAAAATAGATTTTGTACCAAATATTTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGATTGATATAAAACAAAAAATTGCCATTTAAATGGCTTTTTTTGTTTGTGTAAATATGGATTTGATAGATACCCAATCAAGTTGGGTATTACGAATGGTATTTGTATAATGCTTATCGAAATTCCTACTAAATGGCGATCTAAGAAAATCAAGCTGAGTATTGCAAATTAACTCTATACTTTACAGGAACTTGATAGGGTTGATGACCTTTTGCTCTTAGCGATCATTGCAAAAGTTAAGATACTCACATTGTATACATTGATGACCTGTTGCTGATGAATCAGGCTTATTGCCATTATCAAGAGCATTTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGCTAGAATATTTGGTATACTACTGTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //