Array 1 4108-4867 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMC01000073.1 Frankia asymbiotica strain NRRL B-16386 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4108 28 96.4 33 ................T........... CGCGAGACTGAGGGGTAACGGACCTGTGACCCA 4169 28 96.4 33 ................T........... GATGTGGGCTCTGACCTGCGCGAATGATGTGAG 4230 28 96.4 33 ................T........... ATGCTGATCACGCTGTGGATCTCGTCGCCGTAG 4291 28 96.4 33 ................T........... ACCAGCCGACCGGCGGCCACTCGCCCGAACTGC 4352 28 96.4 33 ................T........... CCCTCCGTGTACGTGTCCCCGTCCGGGAAACCG 4413 28 100.0 33 ............................ TCCAGCCGGAGCATCTTCTCCAGCCCGGCGGCC 4474 28 100.0 33 ............................ CGGCGAGGCGACGGAACCTTCACGCAAAGGATC 4535 28 100.0 33 ............................ CCCATGCGGATGTTCTTCCACCCGCCGGGGACC 4596 28 100.0 33 ............................ GCGACGATGTCCTGGCAGACGACTTCCTGGGTG 4657 28 100.0 33 ............................ GAGCTCCCGGACGACGCGGAGGCCGTATGGGTC 4718 28 100.0 33 ............................ ACAGTGACGCCGCCGGCACTGACGCACACCAGC 4779 28 100.0 33 ............................ TGCGTGAACGAGGTCGTCGCGTCGTTGAGGTGC 4840 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : AGGCCGATCGACTCATGGCGATGACGGCACGAAACAGAAGCTCCTGAGCCGAACCGCGGAATCCGGAACCTGCACTCTTCGGCGGCACAGTGATCAACACCGCTTCCGCATCGACCGACCAGGACGCCGCCCGGGTGCGCGACAACACGGCGGAACCGAAACGCTCCCCGCGACTCGAACCGTGGCTCCGCCGCCCATTCGGAGCAGCGGCGAACATCCGGCGCCGGCGATGTCGTCGCCACCCAGATCTTGACCACCCAGCTCCGCGACCCCTGAAACTCCATCCCTCAAAGGATCGGCCAGCCATGCCCCTGGGCTACTCCGAATGGCAGGTGACAGCCACCATGCTCAATGTTGATGTTCCGCATTCGGCGCGTATGTACGACTACTACCTGGGCGGCAAGACCAACTTTCCCGCCGACCGCCAGGCAGCCGGGCAGGTCCTGCGTGACTTCCCGCAGGCACCGACTGTGGCCCGGTGTAAGTCACCATTAGGCCAG # Right flank : CACTTGATGACCTGGGAGTTTAGCGGGCGATAAGGGTGAAATACATCGGTCCGTCTCCGACGACGGTCGAGACCGGTGACCGCCGACCTTGCGGTGCACGACTGCACGAGACCACCGCCAAGCCCTTGCGGCCTTCGCCCTTCCAGCCCGCTTCCTGCCGATGCCATCCGAGACAACCGCGCGATGCGCCCGCTGTCGCGCCCCGCTCGTCGTCAACGCCCAGGAACATCAGCAACCCGTCGTGCCGCAGCCCACGAACGTCAACGCCGTCGAGGACCGATATCGGTACAGGTCGGCTGCGGCTCACGGTCGCCGAGCTGGGGCAGGACGATGGCGACGCTGTACGCCGGGGCCTCGGCGCCGGGGCGGCGATCAGAGTAGAGAGGGGGCGTCGCCGCGCTACCTCACACAACCAGCGCCAATTACAATCCGTCACGACCCGATGTGACAGAGGGTGAAGAAATCTGGGCTCGTCTCACCAAAAATGATCATGCCCCATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : GGAAGATCCCCGCGCGTGCGGGGACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 1028-770 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMC01000128.1 Frankia asymbiotica strain NRRL B-16386 contig_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1027 36 100.0 38 .................................... GAGTCGACGGCCACGTGGACCCTTTCGGCAGTGAGTAC 953 36 100.0 39 .................................... CACTGGACCAAGTATTCGTTGACGCTGTCCAACAGGTCG 878 36 94.4 37 ...G.......G........................ TACTTCCCGGCCCCGAGGTCGGCGTAGTCCCACGGTG 805 36 94.4 0 ...G........................G....... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 97.2 38 GTCACTCCGTCCGCGAGGACGGACGCTCACTGAAGC # Left flank : GGCACTTCCCCGTCACCACCGGCGGCGCCGCACTCCTCACCACCGGCTGCAGCCCCGAGTGGAAACGCGGCGAATTCCGCTGGCCCCTCTGGAACGCCCCCGCGACCAGCCGCGTCATCATGTCCCTGCTCGCCCACCCAGACCTGACCAAGATGACCCAGCCCCAACGCGAACTCTTCTCCGTTCACCGCCTCCTCGCCGCCCCCATCCGCCGCACCGACCAAGGCGGCTACGGCTCCTTCGGCGCCCCCACCGACCTCCCCCCAGCCCCCACCCACACCGCCCTCGCCACCAGCCCGACACCTTGATCCCAAAAAGGCCATCGCGCCGCGCGCCGCGAGCGCTCTGATCACTCGCCAACACGCAGGACCGTTCGCACGCAGGTCAGACCCCTGCACCCGTACCTTGACACCTCCATGGCGCGCCACAGCTGATCTTCCAGCAGACCGCTCGCAACCGCTTACATATCGGCCGCTCAGCGCCCCCGTTATTCAAGAGCT # Right flank : ACTGAGGCAAGAGGTTACCGAGACCGTTCTGAGCCATGGTCCTAGGTGCACTGTCCTCCGAGACGGACGATCATTAAAGCGGGACGTAGACTGCGGTGAGGAAATCCTTGGCGCCGGTGGRGCACTGTCGTCCGAGACGGACGATCACTGAAGCGACATCCTTGTGCGRGGCCAGCAACTCGGTCTGAACGCGGCGCGCCGTCCTCCGCGATAYACAATCACTGAAGCGGGGAGTTCGACCCACGGCTGAACATTATGCAGCRAGGCGCACTGTCCTACGAGACGGACGATCACTGAAGTTCCCGCAGCGCCATCAGTAGCGCTCACGCCGTCATCGCGCACCGTCCTCTGAGGCGGACAATCACTGAAGCATCATGCGGGGCACCGACTTGCCCGTGCCCGCGGCCGGCGCACCGTTCTCCGATGAAGAGTCGCTCTGCCCGGGAGGGCGGACGATCGCTGAAGGATCAGCACCTCGGTGACGATCAAGCTGCAGAAGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCGTCCGCGAGGACGGACGCTCACTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 2980-2216 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMC01000150.1 Frankia asymbiotica strain NRRL B-16386 contig_151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2979 36 100.0 38 .................................... TTGCCGGCCTGGTGGGCATGGTCCGGCGAGGGCTGGTC 2905 36 100.0 36 .................................... GCGATGGCGAGGCAGAAGAGCACGGTCGACTGGCCG 2833 36 100.0 38 .................................... ACCGTGTGTTCGAATCGGCCCGAGGCCAGCCGGCCGAG 2759 36 97.2 37 ..............G..................... GGGTCCCAGACGTAGTCGGGGATCTCCTCGATCCAGC 2686 36 100.0 35 .................................... ACGTAGCCCGTACCCTCGGTCGCCTTGATAAGGAT 2615 36 91.7 35 ..........G.A...A................... CCCGTCCGCGAGTCCGTCGCCGGCACCATCCGCGG 2544 36 100.0 37 .................................... TGCACCGCAACGACCGTGGTGCCGGTCTCCGGGTAGT 2471 36 75.0 37 .G...AT..T..T.CG..A.........G....... CGCTTGAAGGCTTCGAGCTTCGCTCCGGCGTTGTTGC 2398 36 75.0 37 .G...A...T.GT.CGA.A................. CACACCACGTAGCCGTCGGTGCCCTTCGCCAGCGCCG 2325 36 75.0 38 .A...AT..T..T.CGA.A................. AGAATGCGGTGCGGGTCAGGCGTCTCGACGACCTCGCC 2251 36 80.6 0 .G...A...T..T.CGA................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 90.4 37 GTCGCTCCGCCCGCAAGGGCGGACGATCACTGAAGC # Left flank : CCACCTCCCCGTCACCACCCGCGGCACCACACTCCTCACCACCGCCTGCGACCCTGGCTGGAAAGAAGGCGCCTTCCACTGGCCCCTCTGGAACGCCCCCACGACCAGCCGCGTCACCATGTCCCTGCTCGCCCACCCAAACCTGACCAAGATGACCCAGCCCCAACGCGAACTCCTCGGCGTTCACCGCCTCCTCGCCGCTCCCATACGACGCACCGACCAAGGCGGCTACGGCTCCTTCGGTGCGCCCACCGATCTCTCTCCAGCCCTTACCTCCACCGTCCTCGCTACCAGCCCGACACCTTGATCCGGAAAGTCCATCGAGCCGCGCATCGCGAGCGCTCTGATCGCTCGCCAACATGCAGGACCGCTCGCACGCAGGTCAGACCTGCTGTGCCCGTACTTTGACACCTCCATAGCGCGCCACAGGTGATCCTCCCGGCGGACCGCTCGCAACCGCCTACATATCGGCAGCTCAGCGCCCCTGTATTCCGCGAGCT # Right flank : CCGAACCCCGCAAAAGTCGATTACATCGGCGTCGACTGGCYCACCGTCCTCCGAGGTCGACGATCACTGAAGGAGGCGCTCGTAGCGTCCGCCGCTTCGGTCGACCTGGACGCACCGTCCTCGGAGGCGGACGATCACTGAAGGATTCATTCTCTGCCATCATGCGCGGACGGGCGCTGGACGCACCGTCCTCCGGGACGGACGATCACTGAAGCGGATCCATTGACTCTGCGTACTTGAACGCCTTTCCCATGGCGCACCGTCCTCCGGGACAGACGATCACAGAAGCTACGCCTGATAGGTCGCGAACGGCAGCACCACCACCTGGCGCACCATCCTTCGGACGGACGATCACTGAAGCATGAAGTTGGGGTCGTTGAGCAGCCAACCCTTCATGCCGCACCGCCCTCCGGGACGGACGATCACTGAAGCGAGGCCGGGTCGGGCGCCCTGGTGCTCCGCAACGACGAGTCGCGCCATCCTCGGCGACGGACGATCAC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCGCCCGCAAGGGCGGACGATCACTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //