Array 1 38058-38924 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADG01000124.1 Pseudomonas aeruginosa strain VET-78 NODE_33_length_47406_cov_42.4608_ID_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38058 28 100.0 32 ............................ TCGGGAAAGAGACCATGACCATCGGTGAAAAC 38118 28 100.0 32 ............................ ATCCGGGCCTGCGCAGATCACCCGGCCAGCTT 38178 28 100.0 32 ............................ AGGCACTGCAGGCCTACCGGCGTACCCTGCGC 38238 28 100.0 32 ............................ ACGTCAATGCAGAACTCGAACGTCGTGTGCAT 38298 28 100.0 32 ............................ ACCCAGTGAAATCAGTCCCCGCGCTCGTATCG 38358 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 38418 28 100.0 32 ............................ GAGATCATCCGGCGCAAGCGGGAACAGCTGCT 38478 28 100.0 32 ............................ TCACGACCTTCTCGAACGTTCCCAGGTACGTA 38538 28 100.0 32 ............................ AAGGTCAATTCCCAGGTGAAGCAACTGGTGGC 38598 28 100.0 32 ............................ GTAGCAGAGAAACTCAACAGCCCGACTGGACG 38658 28 100.0 33 ............................ GTAGGGATTGTGAGCGTCGAGGAGCGCCAGGGC 38719 28 100.0 32 ............................ TCGCATAATGGGCATTACGTGTAAATGCTCGC 38779 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38838 27 92.9 32 .....................-..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38897 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTAATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 408814-407886 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADG01000199.1 Pseudomonas aeruginosa strain VET-78 NODE_3_length_408944_cov_45.4435_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 408813 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 408753 28 100.0 32 ............................ TCGGTGACGCTGGACTGGTCGAGGGGCGTAGA 408693 28 100.0 32 ............................ ATATCCAACACCGGGACGGGAGTCCGATCCTA 408633 28 100.0 32 ............................ AAAACGAGCCACGGGTGTCGGCCTTCGACTCA 408573 28 100.0 32 ............................ TCAAAGCGCGAACCATCCAACGGCAGTTCGCA 408513 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 408453 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 408393 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 408333 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 408273 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 408213 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 408153 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 408093 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 408033 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 407973 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 407913 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.4 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 929-120 **** Predicted by CRISPRDetect 2.4 *** >NZ_RADG01000194.1 Pseudomonas aeruginosa strain VET-78 NODE_57_length_1059_cov_20.1701_ID_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 928 28 100.0 32 ............................ AACCAGGAACGAGCCATGACCATTGCCCTCAA 868 28 100.0 33 ............................ CTTTGGCGTTCAAGGTGTTTCACCAGTCCTTGG 807 28 100.0 32 ............................ TCGAGCACATCGAACTGCTCGGGGTGGAAGGG 747 28 100.0 32 ............................ TGACAGCCCGGCGTTCACCGAGCTGGCCAGCT 687 28 100.0 32 ............................ GTGGCGTTCAATTGTGATGTCGTGCTGCTGCC 627 28 100.0 32 ............................ TGTTGCGCGGCCAGCGCGGTGTTGACCTGCTC 567 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 507 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 447 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 387 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 327 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 267 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 207 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 147 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATCTGTCTCTTATACACATCTGACGCTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //