Array 1 33675-34557 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AOIV01000041.1 Halogeometricum pallidum JCM 14848 contig_41, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	==============================	=====================================	==================
     33675	    30	 100.0	    34	..............................	GCCTTGCAGAAGTCTTGCAACCCCTCCCTATCTA   	
     33739	    30	 100.0	    35	..............................	GAGCGGCGCGACGGTCTCCACGACGGGCGTCCACA  	
     33804	    30	 100.0	    37	..............................	GACCTTGACGACGTCTCGGACCGCGACCTTCTGAACT	
     33871	    30	 100.0	    37	..............................	AACCGCCGTCCCGCTGCCCCCCGAGACGTTGTGAATG	
     33938	    30	 100.0	    35	..............................	GCCGGTCGAGTCGCTCGCCGCCTGAGCAGCGCCGG  	
     34003	    30	 100.0	    35	..............................	CGGATGTTCGGGCACTCGGTGACGCGGACGCCCTT  	
     34068	    30	 100.0	    36	..............................	GGCGAGAAACTCCTCAGCATGCGCGACTTCGCTATT 	
     34134	    30	 100.0	    36	..............................	CGGGTCGACGATCTGATTGATGTCAGGAAGTGCCAT 	
     34200	    30	 100.0	    35	..............................	CTCGACCGCCTCTGTCGCCCCCTCACGAACCGCGA  	
     34265	    30	 100.0	    37	..............................	CCGAATACAACGCCGTCTCACAATACACACACGCCGA	
     34332	    30	 100.0	    36	..............................	CTCGAACCGGAGGACACCACCACCGACTTCCAAACC 	
     34398	    30	 100.0	    35	..............................	GCGGAGGCGGGATATCATCTGCTCTCGTTTCTCGG  	
     34463	    29	  96.7	    36	................-.............	TCGTTTCAGCCATGCCTTACAACCTCACAAACGAGG 	
     34528	    30	 100.0	     0	..............................	|                                    	
==========	======	======	======	==============================	=====================================	==================
        14	    30	  99.8	    36	GTTACAGACGAACCCTAGTGCGGTTGAAGC	                                     	       

# Left flank :   GGGTCGTGGGAGATGTCAATAGTGGAGAGGTGACGGTCGAAGGCGAAGTAGAGATGCTCTGGGAGCCGTCGAACTCGGCGATTCAGGATGCGGGACTGCTGAAGGACGAAACAGGAACGATCAAGTTCGTGAGCTGGAAGAAGAGCGGCCAGCCAGCTGTGCGCGAGGGAGAGCGTGTTCGGTTTCGGTGTGCGCGGAAGAAGTGGTACGATGGGACGTGTTCGCTCGCGCTGACGAGCTGGAGTGATGTGGAGGTGGTTGAGTACGCCGGATGGTGGACTGAGTAGGAATCTGTTGGTGGGTTCTTTTTTCGACTCCTCCACGCCAGCCCCACCACCCCACCCACCGCTCCGTGCTCGCTTCGCTGCGCGCGCAGCCACGACCTTGTCTCGGGGGTCGATTCCGTCGACCCCCCGGGGGTTTAGGGGGTATTGGAGGTCGACGGAAACACTTGTGTGTGAATAGCGTATAGGAGGGTTGTGGTGGCCGAATTGGCCATG
# Right flank :  CTGCCATTTTGGTCACATCCTTAACGTTTGAGCGACCGCACCCTCGACGGGTCAAACTCCCACTCCATCGATCATTTGGCAGAACAGACGCAGCTAGTCGCTACTCTGTGAGAAATAGTTCGCCCCTCACGAGTGCGGGGCGACCATGTGCGCCTCGCGCGTTATGACCAGGACGCACCCACTGAACCAACTAGAATTCTCGAAGCGAGTCGGAAAACGAGCGCAGTACGAAGCGTTCGAATTCACGCTTCTCAGAAACGCGATCCGCGTCACCAACGCGAGCTACGCCGATCCGGAAAACCATACCTACGAGGTCGACATCGAAGACGGACTCCCGGCTCGTTGCACCTGCCCAGCGGACGAGCGCTTCGAGGGCGCCTGTAAGCATCGTGTCGCGATCGCAATTCGGCGACCGCTCCTGCAGGCAATGACGCTGCACAGAGACGAACCTGTCGTCGCTGACGGTGGGCAACAGCACGGCACACTAGGTTCAAAGACCG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTACAGACGAACCCTAGTGCGGTTGAAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.70,-2.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
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