Array 1 94931-93559 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMKV01000001.1 Escherichia coli strain MOD1-EC6816 MOD1-EC6816_1_length_664118_cov_43.2717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94930 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 94869 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 94808 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 94747 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 94686 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 94625 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 94564 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 94503 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 94442 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 94381 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 94320 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 94259 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 94198 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 94136 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 94075 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 94014 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 93953 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 93892 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 93831 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 93770 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 93709 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 93648 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 93587 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121943-120633 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMKV01000001.1 Escherichia coli strain MOD1-EC6816 MOD1-EC6816_1_length_664118_cov_43.2717, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121942 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 121881 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 121820 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 121759 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 121698 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 121637 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 121576 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 121515 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 121454 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 121393 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 121332 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 121271 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 121210 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 121149 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 121088 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 121027 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 120966 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 120905 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 120844 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 120783 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 120722 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 120661 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //