Array 1 59866-60254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHO01000023.1 Gallibacterium anatis 10672-6 contig000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 59866 36 100.0 34 .................................... CTAATCTAGTACAGGTTTCGACCGTAAAGACGTT 59936 36 100.0 33 .................................... AATCAGAGCGAAATTGTAGCCGTATTCAACGGC 60005 36 100.0 35 .................................... TCCGCATCGGGCGCAGCATCAAAAGTGAGAAGAGT 60076 36 100.0 36 .................................... ACTAATCTAGTACAGGTTTTGACCGTATGGACGTTA 60148 36 100.0 35 .................................... GCATCCGTGTATATGCACCTCGCCGTTCTTGTTGG 60219 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 100.0 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCATTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACAGCGCTGCCTACCAGGCTATGATTTTGCTTAAATAATAATCATATTGAGGGTTAACTATGCAGTCATTCATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : ACGGCTTGCCGTGTGCATCCAATAGTTCATCAATTCGTTCTAACCTAGCCCTGTTCTAAAAGGGATTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 9727-9058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHO01000068.1 Gallibacterium anatis 10672-6 contig000064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 9726 36 100.0 35 .................................... GCAGGTTTTAATCTGCCAGTTTAAAGGGCATCCCC 9655 36 100.0 32 .................................... CCAATGGCTCGGCTATCTATTACCCAATCAAT 9587 36 100.0 32 .................................... TACCGCTACAAACAAGATCGTCTTTGTGTGCA 9519 36 100.0 33 .................................... TGCTTGAGTAGATTTAATTTTGCTTCTGAGTAA 9450 36 100.0 36 .................................... GCCAATAAATGGCTGTTAATTGGTTAATTAAAATTA 9378 36 100.0 33 .................................... TGGTAAGCAATCATCAGGCGGACTCACTGGAAT 9309 36 100.0 36 .................................... TCTGCTGCCTCCTCATCACTCTCAACGGCGGGATCG 9237 36 100.0 35 .................................... TTTGAACACGGCTGTTTTTGATACGCTGCCGTCAG 9166 36 100.0 37 .................................... TCAAAGCACAGCTAACTACTGCGTGGCAAGCATCAAA 9093 36 86.1 0 ...............................ACTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 98.6 34 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : CCGATCTTTCTAAAAGGGATTGAGACCCCGACCCGCCTTACCTTTCAGGTCACATCCATT # Right flank : TATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTTCTATCTATAGTAACGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAGTATTTAGTGTATAAATTTAGGAGAATTTTTATGAAAACAATTGCAATTATTTTAACTACCTTATTTGCGGTTACCGTTACTGCGCCTGTATATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCGGATAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTTATTATTTACTATAGTTATTATTTTTGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATAACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 87221-87969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHO01000040.1 Gallibacterium anatis 10672-6 contig000038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87221 28 100.0 32 ............................ AAAAAAGGCACTTGAACTTGTACAGGCAATAA 87281 28 100.0 32 ............................ TAATATTGCAAAAGTGCTTGAAAATGCTGTTA 87341 28 100.0 33 ............................ CGATTGACATCATAGAAAATGACGCTATTTCAC 87402 28 100.0 32 ............................ ATCTCGCAATTTAACTGGCTCACCTGCTAATG 87462 28 100.0 32 ............................ ATCATCATCATTAAGCATTTTTTGATAAAAAT 87522 28 100.0 32 ............................ GCAGGATGTTGAAACTAAGATGTTAAAAGTGG 87582 28 100.0 32 ............................ AAGATATGCCGTGAAATTGATTAAATTGACTA 87642 28 100.0 32 ............................ GTGTATCTACTGACACACAAGATCTAACTCGT 87702 28 100.0 32 ............................ ACGCAATCAGAACAATTGATGATTGGTATTGC 87762 28 100.0 32 ............................ CGGAACAAGCGTCAAGCTAGGGTAAACACGTA 87822 28 100.0 32 ............................ TATCCACAGATACAGAGAGTCTGAATTTGAAA 87882 28 100.0 33 ............................ TTGCGTGTTGTTTTGATGTAGATAGTCTGTACT 87943 27 75.0 0 .........T....-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGGTTTTTATATTAAAATGTTCTTTAACAATTGACTTTCCTTATATCATAAGGTATTTGTGTCTA # Right flank : ATACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTGTCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTGCTACAAGTGAACAATGCGAAGTCAATTTCGCATTTTCCGTACGCCAATAACCATTGATATAATTTGTCTTTTTGTTATGGAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //