Array 1 50132-51474 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUP01000016.1 Parabacteroides merdae strain OM05-11AA OM05-11AA.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50132 32 100.0 33 ................................ TTTTTGAGCAGCAATGGCGCGCTTTTGGCGTCT 50197 32 100.0 33 ................................ TTAATGGCAAGAAAACTTATAATCGTTGGATAA 50262 32 100.0 33 ................................ GTAAGCGCGAAAAGGATAAGCCGACACCTTAAT 50327 32 100.0 33 ................................ ATTTCGATTGCACTGCTCAATTGCCTATCTCCC 50392 32 100.0 34 ................................ AATGTCAGAGGGAGTAACGGATAAGCCGGAAATA 50458 32 100.0 34 ................................ TAAGCGGGGTACAACAACTCGGGAGATAGGCAAT 50524 32 100.0 35 ................................ ATTTTTGTCTGGATGGGGAACATCATCGGCATGAA 50591 32 100.0 34 ................................ GTCTCACAGATGCTCAAAAGACGCAAGTCGAACA 50657 32 100.0 33 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTCTGGA 50722 32 100.0 34 ................................ AGAGTTTAAAAGGTAGCAATGCTCTATATCGGAA 50788 32 100.0 33 ................................ GGAGAGATTAACCTTAGCATCAGTTTCACGCAC 50853 32 100.0 33 ................................ GATCTTGAGTGTGAAGATTTTGCACGTCGTGTG 50918 32 100.0 33 ................................ CTCTTTCGCATTTTAAGGATATACTTAAGGCAC 50983 32 100.0 33 ................................ CCCAATATGGGTATTAACGAAGATGATGCTTTT 51048 32 100.0 34 ................................ TGATGCGGAAGCAAAGAGTATCCTCGTAACCATG 51114 32 100.0 33 ................................ CGAGTTTAAGAGATAGCAATACTCTATATCGGA 51179 32 100.0 34 ................................ AAACCTGCATCCTTTAAACGAGACATAACGGCAG 51245 32 100.0 33 ................................ ATAGGCGCGGAAAGGATAAGCCGATACTTTAAT 51310 32 100.0 34 ................................ TATCTTTTCTGTTATCTCTTTATCCTTAATAATA 51376 32 100.0 35 ................................ CGAAATATGTTTTATAACATATAGTCGGTTCTTGT 51443 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 21 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCCGGAGATCCCGTCTCCCCAAAGCTTGCGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCAACCAATCCCAACAAAGGAACCGTTATATTGGAAACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTAATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTAGATGTTCGCATTCCCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTTTTATAATATTTTTCGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCCATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACCCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 57151-59032 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSUP01000016.1 Parabacteroides merdae strain OM05-11AA OM05-11AA.Scaf16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 57151 32 100.0 34 ................................ ACTTACATGATCAGATCGGTAAGATGGCTCCGTT 57217 32 100.0 33 ................................ ACGCACATAAATTGGTTGATAACCAATATGATC 57282 32 100.0 33 ................................ GTGAAATTAACAAATTGCTCAGCGGTCTGACGA 57347 32 100.0 32 ................................ ATAAGCGCGAAAAGGATAAGCCGATACCTTAA 57411 32 100.0 33 ................................ ATCAGATTGGAAATAAGACCAAGCTTTTTGTAT 57476 32 100.0 34 ................................ ACGGATACATCTATCCTGTAACGCGCTTGGCTCG 57542 32 100.0 33 ................................ ACGCTTAAGGGGGTCACAAAACTCATCCGTATA 57607 32 100.0 34 ................................ TACCCCTACCTCTTTGATGTATGCTAATTGGCAG 57673 32 100.0 34 ................................ AAGGTGCTGCCTATGCTAAAACGCTTGCGGAAAC 57739 32 100.0 35 ................................ TCAAGCTGCCAAGCGTCGTATTATGCAAGCTCGGC 57806 32 100.0 34 ................................ ACGATAAGTCAACCACTTGGGCAAAATGCTATCA 57872 32 100.0 34 ................................ ACGAATATAGATACGATCAAAATCCAAGGCCTTT 57938 32 100.0 33 ................................ CGGTAAGCTCTTTTACATGCCTATAGACTCATG 58003 32 100.0 34 ................................ AACAGTAAAGGATAGAATCTCGTTATACCTTGAA 58069 32 100.0 33 ................................ AAAGGGGACAAAGCCAATTTATCGGATGAGATG 58134 32 100.0 35 ................................ CTAGCGGCTGCTATCGCACTCTATATGTTGATACT 58201 32 100.0 35 ................................ ATATATCTATGGTATATGTGACTCTGACAAGTTTG 58268 32 100.0 36 ................................ CCAAAACGTTTCTCTATCTGTTCGACAACCTTGTCC 58336 32 100.0 34 ................................ TCCGATATATGAGATTTCTATGTCGTTGCCTAAA 58402 32 100.0 35 ................................ GTCAAGTAACAACTACGTGAATAACTTGTACTTAA 58469 32 100.0 35 ................................ CCAAATATCCTTGTAAGAAGTGGTATGTGCTTTGC 58536 32 100.0 35 ................................ CACAGATTCAATTCCGCTTTTGTTACTTGTATTCC 58603 32 100.0 34 ................................ ATCAATAGTCAATGCCAGTCCCATCTTGTCACGG 58669 32 100.0 33 ................................ AGTTAACACCTCTACTGGTGTGTTAGGGTTCCC 58734 32 100.0 35 ................................ GTAGAAGTTGCTGCATACTGTTTTTGGAAAGTGTA 58801 32 100.0 35 ................................ TTAAGAATAGGTATGTGCCTATCTGATGAACTAGT 58868 32 100.0 35 ................................ TGGAGTAAGGGTATCAATGACTATCTGAACGAGAA 58935 32 100.0 34 ................................ CTTTGAAGGGTTGGAAGATAGCAGTAAGCCGTCC 59001 32 90.6 0 ..TA.......................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.7 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTTATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : CGAGTAAAACATACCTGCAGTCGACACAATTTATTAAATTATCAATTTCATTATTTTACCATGCAAGACTGAACTGCTCCACCCTTCTTCTTTACACGCTTTTGCATAATCGTCACGATGTAACTTATTATCTATCAGAAACAATTTCAAAAAATGAGTCCAAGTAAGCTTTTTCGATAAATCAGACACTATTTCAAGTTCTGGAAAATATACGCAGAACAACTCCATTTGAAGCAAGTGTCTAACTTCAAATTCTTTACCATAACGTTCCACTAATTCACGAGAAAGATATTTAAATGTATCTATCCGATGAAGTGTTGTCTCTTTACTGTAAAGATCTTGTTTAATTAGTCTACCGATTTCCCAATACAATATGTTTTTGTCTGCATTCAATCTTCGGCTACCTTTTCTCTGTGATTTTTCAATTAAGAAAAGAATATCACGAAGTAAATCTTCCCTTCTTTTCATATTCATTTTATTTTTATGTACAAAAATAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //