Array 1 473382-473965 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000010.1 Hydrogenothermus marinus strain VM1 Ga0180987_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 473382 30 100.0 40 .............................. AATCATCATCTATTGCATAAAAAATTGGTGTTTTCCAATT 473452 30 100.0 37 .............................. GTGCTTGTAAGTTTAGTCTTTTCAAGATTGAAGCAAG 473519 30 100.0 39 .............................. GCAGAAACACGCTCACAGACAGGCTTGCCTCGCAAAATC 473588 30 100.0 41 .............................. TTCCTTTTTCAATGAGAAACTTGTGAAGATGAGGATTCCTT 473659 30 100.0 39 .............................. GCCGTCTATGTGTGTGTGGAAGGTGTTTATTTTATTTAT 473728 30 100.0 38 .............................. TCATTAGGAACTTCTACATATAAAAATACATCTTCTCC 473796 30 100.0 38 .............................. TACCATAATACTCAAGGTTTTCGTCAATTTCCTCTATA 473864 30 100.0 40 .............................. CTATGTATTCATTCATCTTCTCTACCCTACTCTATAACTT 473934 30 96.7 0 .........................A.... | TT [473961] ========== ====== ====== ====== ============================== ========================================= ================== 9 30 99.6 39 GTTTGTAGCCTACCTATAAGGAATTGAAAC # Left flank : ACTTACACAAAGACTTATTCTGCAACCAAGGCTTGATACTAAATTTTCATTCTCAAAAATAGAAGAAATTGGTATAGGCTCAGGTATAAACAATGTAAAGTTAAGTTTTAGATTGAGATATGAATTTAAAAGAGAATTTGCTCCATATATTGGATTTTCATATACAAAACTTCTTGGAGTTACCAAAAATAGTGCTGAACAAGCAGGAAAAGATACAAGTTATTTTAATTCTCTTATTGGCTTACGAATGTGGTTTTAAAAATTTGTCGATCGGGTAATTTTAGGGAAATTTTAGTGCTTTTAAGATGTTAAAATTTTGCCAAAATTTAACTCTAAGCTAATAATGATGCTGATTTGTCGATCTCTAAGGATTTTTACAGGATTGAAGGTCGACAGAAAATAAACTCAATTTGACAAGGAAATTTTTTTGATGTAAATTTTAAATATAGCTAATATTTATGCTGGTTTCTTGGCAATAGAATATGAATAAAGAATAAAGG # Right flank : CAGGTTGAAATTTATAAAAAATTTTTTTAAAATTTCAGTGCATATAAAATATTTTGGATAAAAGATGGGGAAGGAATCTTTTTCAGTAGAGTTTGAAACAATAACACCTGTTTTTACCGGAGATGCATGGCAAGAATGCTCAGAATTAAAACCATCATCTATTATTGGAAGTCTTAGATTTTGGTTTGAAGTTTATTGCCATTTTGCAGGGATAGAAGTCAAATATGAAGAAAGCTTAGATTATAAAAAATTCCTAAAAAAATTAAAAGAAAAAATCATAAAACATCAAAACAATAATCAAGATATTGATTTAGAAGAAATATCTGATGAAATATTAGCTCAAATGGGAATATCTTTGCCATCAAGAATTTTTGGTTGCACTGGCTGGAAAAGTAGAGTAGAGATAGAGAATATGGAATATGATTTAAATACTCTTAAATTAGATGATATAGATACAGAATTTTTAATAAATACAGATTTTTGGACAAAAAAAGTTTTAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 147-1187 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000004.1 Hydrogenothermus marinus strain VM1 Ga0180987_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 147 30 100.0 36 .............................. GATAAATTTGATACATGGTGGGATCCAGAAAGGTAC 213 30 100.0 36 .............................. ATTTCTAAAGGATATGTTTTATCTGCATCTAAAGCT 279 30 100.0 36 .............................. TTGTAAATGATCCAAGTACATGGGATAAATTAGTAA 345 30 100.0 38 .............................. CCTCTATAGTATACCTCTTAGAAAAAGCGTACATCACA 413 30 100.0 39 .............................. AACTTTTAACTGTAAAACCACATTCATGTCTATAACCTA 482 30 100.0 38 .............................. TTAAAAAGGGCGCCCCTCCCAACATAAAGGACACCTCT 550 30 100.0 39 .............................. ACTCTTTTTCTAGGCGGGACATCAGGAATGGTGCCCCGC 619 30 100.0 36 .............................. TTTTTGTTCTTGTACCAGCTAAATTTTCCAATATAG 685 30 100.0 36 .............................. CTTAAAAAACTAATAGTAAAGAGGTAAGAAAAATGA 751 30 100.0 38 .............................. TCCCCAGGAGGGAAAGTTCTTTTTCTAGGCGGGACATC 819 30 100.0 35 .............................. AGTTTTATACTCAGTGAGTACTGTTATGTCATTTG 884 30 100.0 38 .............................. TCCAGCGCGCTCATCATATAAGGAGCCCCTCCTATCAT 952 30 100.0 36 .............................. CAGGATAATTTACAAGCTGATAAAATCTTAGCTTTA 1018 30 100.0 42 .............................. GCTTCCATGATTACTTCTCCTAAGAACTTCATTACTTCTTTC 1090 30 100.0 38 .............................. ATAAACATAAAAGCTAATTCATCAGTCAAGTTTTCTAA 1158 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 16 30 100.0 37 GTTTGTGGCTTACCTATGAGGAATTGAAAC # Left flank : AGAATATAACAGAAAATATATTTGCATTACTGGAGGTTTGATGCAACTTACTATCATTTGCGAGGATTTTTAAAAATTTTTAAATCCTCTGAAAAGTGCAAAATTACTTGATTAGAGCAAATTTTTTTATTAACCTAAATTAACGGG # Right flank : CCTTTTTAAAAGATTAGGGTATTGTGTTTTATAGAAAAAAATCTGTTATACTGATTATAGGTAGATTTTATTCTTTTCTTAAAGTTAGGAAGTAAAACTATTGTTGATATTATTCAAAATAATAAGATGGAAATAATATTTAAAAATAAAGCTTTAGAAAGATTAAAAATTGCAGATTGGCAAATAAAACCTAATAACACTCTAACTCTTGGCTCAACATTATACTTTGCTTTATTTAATTTTTTAAATTTTTAAACAAGGCTATAAAAAAATGGCAAAATTAAAAGATATAGAGTTAATAGCAGATTATTTACAAAAAATAAAAAATATTAAAGGAATAGAAGATATTCAAATAATAAATATTCCTGATGATGTAGAAGCTGATATAGGAATAAGAATAAAGCTAAAGAAAGGTTATAGATGGCAAGAAATATTAGACAAGTTAAACGATATTGCTTGGGATTTGTTTGAAAAAAAAGGTGAATTATTAGCAGTTTACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTGGCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 10401-10175 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000004.1 Hydrogenothermus marinus strain VM1 Ga0180987_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 10400 25 100.0 42 ......................... GAAACAACTAATAATAGGTCTTTGTAGAAGGTCATTTTTCAA 10333 25 96.0 42 .................T....... GAAACTATGAATCGTTAGCCTTCCTGTAGTTGGATTTTTCTT 10266 25 100.0 42 ......................... TAAATTCTGTGATTACCTGATATTCTTGTGGGCACTCCTATT 10199 25 88.0 0 ......G..............GT.. | ========== ====== ====== ====== ========================= ========================================== ================== 4 25 96.0 42 GTTTGTAGCCTACCTATAAGGAATT # Left flank : GAAAGGATGGAACAGGAAAACAAAAATGGATAAAGACCAAAAGGAAATAGAACTTAAAAAAATAGATATAGAACAGAAAAAAATTAAAAGTAGAAAAAATAAAATTTAACGTATTCAGTTAAAGAGTAGTTTTTGATTTTTAATGAAATTGAAAAAATGTTTTTAAAGCTTTAAATTTGCTTTAACTAAATAAACGCCCTAAATCCGCTTCTACATAGAATTCTTAAAGCTATTAAAATCTTATAGATCCATTTTTCTAAAAATTTGTCGATCAGGTAATTTTAGGGAAATTTTAGTGCTTTTAGGATGTTAAAATTTTGCCAAAATTTAACTCTAAGCTAATAATGATGCTTATTTGTCGATCCCCAAGGATTTTTACAAGATTGAAGGTCAACAGAAAATAAACTCAATTTGACAAGAAATTTTTTTTAATGTAAATTTTAAACATAGCTAATATTTATGCTGGTTTCTTGGCAATAGAATATGATAAAGAATAAAGG # Right flank : TCCTAAATCTTACCTAATCCCTTGTTTATCAATATTTAGGATAGAACATTTATTTTAAATTATTGATTTTCAAGGATTTACCATAATTTAAGTTATGGTATTGTGTTTATGGTAAAATTATTCATGTTTAATCAGAAGTGCAAAAATGTATGATGAAATAAGCTTCAAAGTAAACTTTTACCTGAACAAGCTTAAAAAAAGAGGATTATCAGATAAAAGTATTGATACATATAAAAACTTACTTAAACATTTTGAAGACTGGTTTGATGAATATGGCTTAATATCTGAAGACAATCTTATATTAGTGGAAACTGATATTGAAAAGTTTATCCAGTATCTAAAATCTAAAAATCTATCTCCTACCACCATCAAGATGATCTTAAATAGAACTAAAGAATTTATAGAGTTTTCTGGTGGTAAATGGCTTGCTGATAAAAGAATATACAGAGAAAGAAATAAAACTGAAAGTGCAAAACCTTATAGTGAAATAGAACTTAAAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATAAGGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3278-2590 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000011.1 Hydrogenothermus marinus strain VM1 Ga0180987_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3277 29 100.0 35 ............................. CCAGTTAAAAAAATAGCAGTATTTGCACCAGCAAC 3213 29 100.0 35 ............................. TTCATCTTTAATAGAGCTTTGTAAGAAATATCCAG 3149 29 100.0 39 ............................. TTTGTTCTACCAATGTGTCTTTTAATTTCTTTAAAATAA 3081 29 100.0 38 ............................. TTCTAAAATACTTTTTAATCTTTCCTTCCTATCATGTT 3014 29 100.0 35 ............................. ATAAATCAAAATAGTTTTTATATAACAGCTTTGGA 2950 29 100.0 40 ............................. TAGTTTCATCTACTAAGTTCCATTTTCCTAAGAACGGTTC 2881 29 100.0 38 ............................. TGTATTGAAGTCCTTATATTATCTTTTCCTTCTATCTG 2814 29 100.0 35 ............................. ATAAATCAAAATAGTTTTTATATAACAGCTTTGGA 2750 29 100.0 37 ............................. CCTTAAATTTTGTAATTTCTTTTAAATGATACACATT 2684 29 96.6 37 .....................G....... CTACTGATGAGAAGATTACATAAACAAGAATAGAAGT 2618 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 99.7 37 GTTTTATCTGAACTATGTGGGTTAAAAAG # Left flank : TTTTGAGAAAAAGCTCCTCCCATCAATGTTGGAGTTATTGTTTTTACTGTTAATGTTATTTCTTTCATATCCCACTCCACTAATATTTTCTACTATTTATAAACGAATTTTATTTTTATTTCTGACTTTATTCTTTTATTTTCTTTTTTAATTTGTTATACTATATAAAAAATTAAATTGCAAGTTTTTTAGATATTCATTGGCTACTTGGAAATAGAATAAGTAGTCCCATTTAGTTCAGATTTTGTTTTTTTATTAACTTTTTATGAAAATACATAACAAATTTTGATATGTAGTTGCATTTTGAATAGAAAATATATTTTTGTGTAAGCTGGCTTTTTATAATAACTTGCGAGAATATAATAGAAAATATATTTGCATTACTGGAGGTTTGATGCAACTTACTATCATTTGCGAGGATTTTTAAAAATTTTTAAATCCTCTGAAAAGTGCAAAACTACTTGACAAGAGCAATTTTTTTTATTAACCTAAATTAACGG # Right flank : GCGGATAAAGGAGTAGTAGGTTCGTTTTCTTTTATAGTCTGGTTTTATATGTAAAAAATGTTTGTATCTCTTTGGTTTAGAAATAAACGATTTAAAACCTTATTTATAAAATTGAAATCAATAAGCCATTTTACCTGGAATAACTCCTCTTACTCCACCTTTAGGATTTTCCATATCTCCTTTATATCTTGGAATAAGATGAATATGTACATGAAAAATTGTCTGACCTGCATATTTCCCTATATTAACTCCTATGTTATATCCATCTGGTTTAAATTTTTTATCTAAAAATTCCTTTGCTTCATCTATCAAATCTAATATACTTACTTTTTCTTCCTTAGTAGCATCAAAATAATTATCAAAATGCCTAAATGGAATAATAAGCATATGTCCTTTATTAACAGGATATTTATCAAATATTGCATAACAATGCTTATTTTGAATGATTATATTTTCATTTGACATATTACAAAAAGGACATTTTTCATTTATGGTTTCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGTTAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 18494-20130 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000011.1 Hydrogenothermus marinus strain VM1 Ga0180987_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 18494 29 100.0 37 ............................. TCCTTTTTTAATATTCTAATCAAACCACTTAACACTT 18560 29 100.0 37 ............................. TCGCACACGGTTGAGTTGAGAGTATTCAGAGGGACTT 18626 29 100.0 38 ............................. GTCAATTAAGATTTAAGAGTATTTTATCTTAAATATTA 18693 29 100.0 38 ............................. TATCTTCATCATAATCATATGTATATTCTTTTCTTTCA 18760 29 100.0 38 ............................. TCTTTTTCGATAGCTTCTTTTGAAACTTTTCTTTCTTT 18827 29 100.0 35 ............................. CTTATACACAACTGAGCCAAGACCAACTGGCAGTA 18891 29 100.0 37 ............................. TTTTGTGAGTGAATATTTCTATTAATCTTGAAGTTAG 18957 29 100.0 35 ............................. ACTTTTTAAATATATCTTCTGGAACATCTTCTAAT 19021 29 100.0 36 ............................. TATTGTTTTCAGCATTAACATTCAGCCCAAGCTCAA 19086 29 100.0 39 ............................. TCTTTATGAAAGGAGCTGTCTTATCTGGTGGAAAAGATA 19154 29 100.0 37 ............................. TTGTATTGTTCTCTTTTTTTGAATTTGTTTTCAAACT 19220 29 100.0 38 ............................. TATTTCCTTAAATTAATCTTTTTCAATTCTTCCTCTAA 19287 29 100.0 40 ............................. ATCCTTCTTTTACTTCTTTTACTAAATTTTTCATAACTAA 19356 29 100.0 38 ............................. TTTCTTTTCAGTTTTTCTATTATCTTTTCGTTATCCAA 19423 29 100.0 39 ............................. TCTTGCTTTATTTTTTCTTTTTAAAAATATTGACAAACA 19491 29 100.0 39 ............................. TATTTTTGGTCATTTGTTATTTATTTTATGTTTTTTCAT 19559 29 100.0 39 ............................. GAGACAGAGCAATTTATAGCTTTAGCTACTTTATCCCAA 19627 29 100.0 42 ............................. ATAAGGATATTCAAATCTTGTTCCATTTGTTATTCTTTCTAC 19698 29 100.0 36 ............................. AAGTTTCTTCTTAAACGATTGCTTAAAAGCTTCTAT 19763 29 100.0 37 ............................. AGTTCCAGCATTTGATAATGAATCAATTGGTGATTGT 19829 29 100.0 40 ............................. TAGGAGATAGTTTATTTTGTGATTAATTAAATAACAGGAG 19898 29 100.0 39 ............................. AGTAAGATTTACATAGATGAGAAATACATCAATATACTA 19966 29 100.0 39 ............................. TAATCTTCCCCTTTCACATTTACATCTTTCTTCTTAAGA 20034 29 100.0 39 ............................. ACCTATACATTAGCTACGGATATGCCTATTGTAAAAGAT 20102 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ========================================== ================== 25 29 99.9 38 GTTTTATCTGAACTATGTGGGGTAAAAAG # Left flank : TCAGCTTTCTACTTTTGAAGGGGAAATATCAGAAGGAAAACTTGAAAAGTGCAAATCAGAAATTTTTGATATAATAAATTTTGAAGAGGATAGCATATATTTTTTTGAAGTTAAAAATCCGAAAAATATAGTAAAGAAAGTAATAGGAATAGAAAAAAATTATATGGATAATATTCTTTAAGGTATAATTAATTTGCAAGGCTACTTGGAAATAGAATAGGTAGGGGTCCCATTTAGTTCAGATTTTGTTTTTTTATAACTTTTTATGAAAATACATAACAAATTTTGATATGTAGTTGCATTTTGAATAGAAAATATATTTCTGTGTAAGTTGGCTTTTTGTAATAATTTGCGAGAATATAACAGAAAATATATTTGCATTACTGGAGGTTTGATGCAACTTACTATCATTTGCGAGGATTTTTAAAAATTTTTAAATCCTCTGAAAAGTGCAAAATTACTTGACAAGAGCAATTTTTTTTATTAACTTAAATTAACGG # Right flank : TATTGCGGAAAACAAGCTGAAAAGTGTATAAGCTTTTAGAGAAATTTGAGTTATAATTAAACTCTATAATTCTTTGGAGAAATTAAAAAAAATGTCAAAATATAAAGTTCTTCTTGTTAATGATGATGGATATTTATCTCCTGGTATAAATGCAATTAGAGATGTTCTTCTTGAAAATAATTTTGAAGTTATCACCATTGCTCCAGATAGAAATATGTCTGGAACAAGCCATTCTCTAACTTTCACAAGACCTTTAAAAATAGAAAAATATAAAGAGAATTTTTATTATGTGATAGATGGGACACCTGCAGATTGTGTACACTTAGGCTATTACGTAATTTTAAAGGAAGAAAAACCTGATATTTTAGTTTCTGGAATAAATACAGGTCCAAACTTAGGAAATGATATTTTCTATTCTGGAACTGTAGGAGCTGCAAGAGAAGGAACATCTTTTGGAATACCTTCAATTGCTTTATCTCCAGCATCTTCAAAGAATGTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGGTAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 42661-42163 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000011.1 Hydrogenothermus marinus strain VM1 Ga0180987_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 42660 30 100.0 40 .............................. GCTGATTTTTCATCTAATATAACATTTGCAGGAAATCTAT 42590 30 100.0 36 .............................. AAGTTTTCACCTCTTGTTCTTTTACTTCTAATTCTT 42524 30 100.0 38 .............................. CCCCCAAATAAAAAGAAAGAACTTTTAGCTATTTACAA 42456 30 100.0 37 .............................. TTAGGATCCCACCATTTAAAAAAGTGCTTTGAGCAAA 42389 30 100.0 37 .............................. ATAACTCTATCTACAATTTTCTTGGGGTGAGTAGATA 42322 30 100.0 36 .............................. AACTGTCAAGATAGTCCCTATAAATAAGTTCTAACT 42256 30 100.0 34 .............................. ACAAAAAAGACGGCTTAAGCCGTCCAGGGGATTT 42192 30 90.0 0 .............T.............G.T | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 98.8 37 GTTTGTAGCCTACCTATAAGGAATTGAAAC # Left flank : TTTTTAAATCTGCCAAAACTACCTCCTTTAAAATAAATAAGCTTAACTTACTATCTATAAATCATAAAACCTTATGAAGCTAATTTCAATAATTACAGGATATTAGTATTTAGTTAAAGAGTAGTTTTTGATTTTTAATAAAACTAAAAAATACTTTTAAAGCTTTAAATTTACTTTAATTAAATAAACGCACTAGATCCCTTTATGTAGAGAATCCTTAGATTTATCAAAGCCTTCTTATGAAGATCCATTTTTCTAAGAATTTGTCGATCAGGTAATTTTAGGGAAATTTTAGTGCTTTTAAGATGTTAAAATTTTGCCAAAATTTAACTCTAAGCTAATAATGATGCTGATTTGTCGATCCCCAAGGATTTTTACAGGATTGAAGGTCGACAGAAAATAAACTCAATTTGACAAAAAAAATTTTTTAATGTAAATTTTAAATATAGCTAATATTTATGCTGGTTTCTTGGCAATAGAATATGAATAAAGAATAAAGG # Right flank : CCTATAAAAATTGATATATTAGTTAAAGAGTAGCTTTTAATTTTTAATAAAAGTGGAAAAATATTTTTAAAGCTTTAAATTTACTTTAATTAGAATTGAAAATTACAATATGAGACATTTAAAAAGTATTTTGGCTTTAGGTTTGTTTTTTGCTTTTGCTCCTTTAATTTTATTTTCCATAGGTGCTTTTCTTTCTTTTTCTTTGCAATTTATAGTTTCTATTTTTTCATATCTTATTTCTTTTATATTTTTCCTTTTGCCATATGTGTTTACTGTTTTATTTTTTGTTTTTGTTTTCATTTTGCTTGCTATTTTAGTTTTTGGTATCAAATTTCTTATAGATTTAAATAGAGAGGTTAAGAAGAAGGTAAAGTTATACAAATATAATAATCATTTGTATTAATCTTATGGTTCTAACAGTTTTTTTCCTTTGTTTTATATATTCAATTTTTAAGTTAAGCAGAAAGAAAGCATTCTTCTATAGGTAAAAACTTAAGTTA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 6680-7179 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000006.1 Hydrogenothermus marinus strain VM1 Ga0180987_115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6680 30 100.0 37 .............................. CAACTCTTCTCTTGCTTCACAGTCATCGTCATAATCA 6747 30 100.0 38 .............................. TTTAATTAGCTACGGGGATAAGGAGATAGAAAAAACAG 6815 30 100.0 35 .............................. AAATATTTTTCATATCAATTGGAGTTAATATTTCT 6880 30 100.0 39 .............................. TCGCATTATCAAAAATAAACATTTCAATAAAATCACCGA 6949 30 100.0 37 .............................. CTCTATTTCTACTTTTCATCAGAGTTTCAACTATTTT 7016 30 100.0 37 .............................. CTCTATTTCTACTTTTCATCAGAGTTTCAACTATTTT 7083 30 100.0 37 .............................. CTCTATTTCTACTTTTCATCAGAGTTTCAACTATTTT 7150 30 90.0 0 .................A.........G.T | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 98.8 37 GTTTGTAGCCTACCTATGAGGAATTGAAAC # Left flank : AGTAGCAACAAATAAAAAATGGTTAGTATTAAGACTTGGAAAACATCAAGGGTTCCATAGTATTACAATAAATTTATTAGTAAAACAGCTAAATCAGATGTTATTTGCAAAAGCATTTAAAGAAATAGCACCAAAAGGTTATGAAAACAAACCAAACAAATCAAGAAAAATAACCTTAACTAATGAAATACTCGGATGGTTAATAATTGATTTAAATTCTTAAAAGAAAGTTTTATAGCATAAAGATCGGATTTCCCAAAAATTTGTCGATCAGGTAATTTTAGGGAAATTTTAGTACTTTTAAGATGTTAAAATTTTGCCAAAATTTAACTCTAAGCTAATAATGATGCTGATTTGTCGATCCCCAAGAATTTTTACAGGATTGAAGGTCGACAGAAAATAAACTCAATTTGACAAGAAAATTTTTTTGATGTAAATTTTAAATATAGCTAATATTTATGCTGGTTTCTTGGCAACAGAATATGAATAAAGAAGAAAGG # Right flank : CCTATAAATTTGAATTTACTTTAATTAAAAAAATAGCTTATAAAAATTTAGTATAAATCTAATCCAAATTTGGATTAAATTCTTGATGAAAAAAAGATAATATCTCATACTTATTATTTCTCGCTAAATTTTTATTTCTACTCTTTATCCATAAATTTACTTTAAAAATTTCATATCCTGATTTTATCTTTTTTTATAACTGAAATAATATTTTTCGCTATTAGCTCTTTAACTAAATTTATTACCTTGTAGTCAGTTATTCCTCTTTTAATGTCTTTAATATGAACAATAAATTAACCTTAACTATTCTTGTCAAAATTTTATTTTTAAAAACAAAATCAAGGTTTTATACAGGTTTACTGAAAAAGACTTTTTTACATATAGAAAAATATATAAAGTTTTATTAAAACTTTACTTTCTGTATAATATTTGAAAATATAAAATTAGGAATTTAGCTATGCTAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 147-1527 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000005.1 Hydrogenothermus marinus strain VM1 Ga0180987_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 147 29 100.0 36 ............................. TTCATTACATCAAACAACACAGCAGAAGAACTAACA 212 29 100.0 39 ............................. TTCTTCATCTGAAAGGCTCTGGAATTGAACTACGACAAT 280 29 100.0 36 ............................. AAATATTAAGGAATACCGAATTAGAAGAAAAAGCAA 345 29 100.0 36 ............................. TTTTGAGAAGACAAAAAAACGATGATAAGGATATTA 410 29 100.0 36 ............................. CGGGAATAATTTAATTGATTAACCGCGAGCTTTGAG 475 29 100.0 40 ............................. ATATTTGTAAACACTGGCCAGAAGAAGACTTATGAGGAAT 544 29 100.0 37 ............................. TACTTTATTGCTATCTGTAATATCAAGAAAATTCTGA 610 29 100.0 38 ............................. GTGAGTGAACGTGGTTTTTATATTGTTCGAATCCTACT 677 29 100.0 50 ............................. GGGGCACAACTTCGTTGTTAGTCTAGGCGGGCTTTCCATACACCCTGCCG 756 29 100.0 40 ............................. TAATTCTAGATAAATTTTGTATTTCTTCGTTATTTGTATA 825 29 100.0 37 ............................. ATAAATGAAAAAAACAATATGAAAAAAAGTCAGATTA 891 29 100.0 39 ............................. TACCAAGCGTTTTCTACAATCTCTTCTGTAATGTTTTTT 959 29 100.0 41 ............................. ACAACTAAATCTTTGTATATGTTTGCTTTCATATTAAGCCT 1029 29 100.0 39 ............................. TATGTAGCAGTAAAAGGAACAAGAAAAAAGGCGTTAGAA 1097 29 100.0 41 ............................. TTTGCCTTGCTTTTTCCTCTAAATTTGCTAATTTATTTCTT 1167 29 100.0 34 ............................. GTTCTTGAAGATGCAGAGGTCAAAGAGCTGATAA 1230 29 100.0 36 ............................. TCTTTTGGAAACCTGATTAGATAGCTTCCGTCAAGA 1295 29 100.0 39 ............................. TCATATTCATTTTCAGGATTTTGCTCAAAAGGTCTTATT 1363 29 100.0 36 ............................. ATAGCATTAATAATTTCATCTTGTTCCGGGTACTTC 1428 29 100.0 42 ............................. TTGTATAGCATAAATGTTGACGAGGATATTATGAATAATATT 1499 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================================== ================== 21 29 99.8 39 GTTTTATCTGAACTATGTGGGTTAAAAAG # Left flank : AGAATATAACAGAAAATATATTTGCATTACTGGAGGTTTGATGCAACTTACTATCATTTGCGAGGATTTTTAAAAATTTTTAAATCCTCTGAAAAATGCGAGATTACTTGATTAAAGCAATTTTTTTTATTAACCTAAATTAACGGG # Right flank : GGAAACGTTAAGTGAAATGCCCGCCGTCGCCTTGGAGGAAGATTTAAAAATTTGGCGGCAATTTCATTAAGGAGATGAAAAACATGGCGTCATTAAACAAAAAAAGAAGAACATACGGAGAACATTTAACTCCTGTTCAAATATTCAAAGAATTTATATTACCAGAAATAAAGGATAATCTTTACAATTATACATGGGTTGATTTGTTTGCAGGAGAAGGAAACCTCATACTACCAATATTGGAATTAATCCCAGAAAACGAGAGAGTAGAATTTTTTAAAAAACATATTTTTCTCTTTGAGATTCAAAAAGAATTAGTTGAAAAAGCTATTCAAAATGCAGTAAAATATGGAATTCCAAAAGGAATTGCTGCACAAAATATCCTTCAAAGGGATACAATCAAAAACTATCCAAAGTTTTTGCTCAATTTAGACTTACCTATTTACCATATAACAAATCCACCATACTTGTATATTGGCTATATTGTGAAGCATAAGGAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGTTAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 8131-9222 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000005.1 Hydrogenothermus marinus strain VM1 Ga0180987_114, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 8131 29 100.0 36 ............................. AAAGTTTATTATGTTCCTTTTGTAGACTTTTTACAA 8196 29 100.0 36 ............................. AGCTATAGATAAAGTCACAATAGATGACTTAGAAGT 8261 29 100.0 40 ............................. TTAGAGGATTGTATACTATATTTGTATCTTTATCTACAAC 8330 29 100.0 39 ............................. TAAAACATTTATTATTTGCTCTTTTACTTTTTCAAACTG 8398 29 100.0 39 ............................. TCACTGATAACTTTTGCATTATCTACATCTACGCAGTAA 8466 29 100.0 36 ............................. TAGAACAAAACTCAAGAACCATATCAGCATTGAAAT 8531 29 100.0 37 ............................. TAGTTTTTATAGGTCCACCAAGATATACTGCAATAAG 8597 29 100.0 38 ............................. GGGGCAATGCTATTCAATAATTGGCTCATAACAGATCA 8664 29 100.0 36 ............................. TTTGATTTTATGTGGCGGTGTTTTTAATAAAACTGC 8729 29 100.0 36 ............................. CTTCATATCTAACGTTCCAGTAGGTACTCAGTATAT 8794 29 100.0 39 ............................. AATACTCTTAAATCTTAAATATTGATTGATAAATAAAAC 8862 29 100.0 37 ............................. AAACGGGAAGCGAAAAAAAAGATAAAAAGTTTTAGAT 8928 29 100.0 38 ............................. GGTTTTGTACCGTATAGGAATATAGCAACTATGGCAAA 8995 29 100.0 36 ............................. TAATTGGTATTTATGCATCAGCAGAAATGATGATAG 9060 29 100.0 37 ............................. TTATCAAATTTAGGAAGTCTTTTTTTCATATCAAATG 9126 29 100.0 39 ............................. TGCTTCTTGAAAAGCTTTTTCCTTGTCTTTGTATATGAA 9194 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 17 29 100.0 38 CTTTACATACCATATAGTTCAGATAAAAC # Left flank : AAATATTCAATCCAGAAAAAGCAGATGAATTATTTGAACCTGACCCTTGCTTTATGAAAGAAATGGAAGAAGATGATGATATTGTTTCTCGTTATTTTGGAGTTCGCCCAAGCCTTTATAGTGATGATGATTGATTTATTCCTGAAAAGGAACAGCTTTAAGATTATTAATCAATAGCTATTATTAATGAGATTATAAAAAAATGAGATTTCTATATAATCAGTATAACAGACATTTTTCTGTAAAACACACTACCATAAGGTGCATTATGGTAAATCCTTGAAAATTAATAAGTTTAAATAAGTATTCTATTGTAAGCATTGATAAATAACGAACAGGCAATAGTGAAAAATATTATATAGGATCGGTTCTGAATAAGTAGAAAAAGATTTATTTCAATTGAATAAGATGCTTGTTTCTTTTACATTATTTATGTCTTAATCCCTATGGTCCAATGAAAATCCTATATATTCCATTATAAATATAAAATCAGTATACTC # Right flank : CCCGTTAATTTAAGTTAATAAAAAAAATTGCTCTAATCAAGTAATTTTGCACTTTTCAGAGGATTTAAAAATTTTTAAAAATCCTCGCAAATGATAGTAAGTTGCATCAAACCTCCAGTAATGCAAATATATTTTCTGTTATATTCTCGCAAAGCATTATAAAAAACCAACTTACACAGAAATATATTTTCTATTCAAAATGCAACTACATATCAAAATTTGTTATGTATTTTCATAAAAAGTTAGAAAAAATAAAATCTGAACTAAATAGGCCTACTTATTCTATTTTCAAGTAGCCGTTTTAGAACCTATAAAATTATTGTATTGTAATTTAATGAAAAAAGCAAATTTAAAACTGAATACTCATATTAAAGTTAGTGAAATGCTTTTTTATGAAATATTACCAATGAAATAGTCAAAAGTTTGACTATTTCATTGAACAAAAAACTGTCAAACTTCTATGAAAATAGATTTACACATTGTGTAAATAAAATTTCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATACCATATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 161-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000008.1 Hydrogenothermus marinus strain VM1 Ga0180987_117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 160 30 100.0 35 .............................. GAAGAAAAAGCAAGACAAAAGGAAGAAAGAGAAGA 95 30 100.0 35 .............................. TGAACCCTTCGTGACGAAACACAGTTTTCTTGATT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 GTTTGTAGCCTACCTATAAGGAATTGAAAC # Left flank : TCTTTAGAATTTACTTTATTAAAGTTTAAAATATCCATATATTCCCACTTTCTATAAGCTATAGCATATATTCCTTCTTTTGTTAATTTGTTGACAAAGACGGTATTTAGTTAAAGATTAGCTTTTGATTTTTAATGAAATTGAAAAAATGTTTTTAAAGCTTTAAATTTGCTTTAACTAAATAAACGCCCTAAATATTCTTTTATGTAAAGAATCATTAGAGTTATCAAAGCCTTCTTATGAAAATCTATTTTTATAAAAATTTGTCGATCAGGTAATTTTAGGGAAATTTTAGTGCTTTTAAGATGTTAAAATTTTGCCAAAATTTAACTCTAAGCTAATAATGATGCTGATTTGTCGATCTCTAAGGATTTTTACAGGATTGAAGGTCGACAGAAAATAAACTCAATTTGACAAGAAAATTTTTTTGATGTAAATTTTAAATATAGCTAATATTTATGCTGGTTTCTTGGCAATAGAATATGAATAAAGAAGAAAGG # Right flank : C # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 61319-60887 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000015.1 Hydrogenothermus marinus strain VM1 Ga0180987_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 61318 30 100.0 35 .............................. TGAACCCTTCGTGACGAAACACAGTTTTCTTGATT 61253 30 100.0 37 .............................. CTCCTTCATGAGCACTTTGAATAGAACCACCTGCATA 61186 30 100.0 35 .............................. CGCCGCCTATGATCAAGGGTTCACAACAACGAACC 61121 30 100.0 42 .............................. ATTTTTGAAAAGCATCTCCTACACCCGGTAAAGAATATACAA 61049 30 100.0 35 .............................. ACTCATATTCTTGTGGGCATTCATCTTCTGAATGC 60984 30 100.0 38 .............................. TGTCATCAAATATAAGCATTTCAGCAAAATCTCCAAAT 60916 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 100.0 37 GTTTGTAGCCTACCTATAAGGAATTGAAAC # Left flank : | # Right flank : TTTATAAAAATTCATATTAAAGAGTAGGTTTTGATTTTTAATAAAGCTGAAAATATACTTTAAAGCTTTGAATTTACTTTAATTAGAATTAAAAACCAAGTCAGATTTTTTAAGTTTTTGTAGTTTATAATTAGTAAATAATCAATCATTAAAAGAGGTTTAAATGAAAGATTTTTTTCTTGAACAAGGATTTAAAATCCTAAAATTAGCAAAACCAAAAATTGAAGATTACATAAATAAAACAGACTTTTTAAATCTTTTACTTAAAAATCTAACACCCGAAACAAAAAAAGCATTATCTCAAAAACTATTTGAAATAACTTTAGAAAATCTAAAATCCTTAGATGATAAAGAAGTTGCTAAACTTGCAATAGATGCCAAAAATTCGGTTGTTGAATACTTAGATAAAAATGATGAAAACATAAAAGAAACAATAAATAATATCTTAAACAAATCTATAAAATTAATAGAAGAAGACAAAGAATTTCAAAAACAGATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 3689-5837 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000001.1 Hydrogenothermus marinus strain VM1 Ga0180987_110, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3689 29 100.0 39 ............................. TATATTTAAGGCAATATTTTTTGAGCATTTCGACTGTGT 3757 29 100.0 39 ............................. TTTTTTTAGCCATTAAATTTCGGGGGTGGAATTTGGTAT 3825 29 100.0 34 ............................. AAACAAAAAGCAGTTGGTAAATACTCTGCAACAG 3888 29 100.0 36 ............................. ATAGCAAACTCTGTTGATAAATCTAACATAAGGGCT 3953 29 100.0 36 ............................. CCAGATGTGTTTAAAGACGGCGTTGGCGTCTTCTCT 4018 29 100.0 38 ............................. AACAAAAAGAAAAAAAAGAGATCTATACATTAGAAGAA 4085 29 100.0 36 ............................. CTCTTATGAGATAATCAGTAAGATAATGAAAAAATT 4150 29 100.0 36 ............................. CTCTTATGAGATAATCAGTAAGATAATGAAAAAATT 4215 29 100.0 36 ............................. ACCTTATTAGATTGATTAGTGAATAATTACAGGTTT 4280 29 100.0 37 ............................. TAAATCATCTAAAGAAGAATAGTAATTTGATTTTGTT 4346 29 100.0 37 ............................. TTGTCAATAGGTTTTATCAATTTAACATAGTGTTTTC 4412 29 100.0 36 ............................. TTAGTTAAGTATCGCTTTGTCATCGGGTCAAAAACT 4477 29 100.0 35 ............................. GAAATTTTTTTTTCACGATATTAATGTCTACATAG 4541 29 100.0 37 ............................. GTTTTTAACTGCTTCTTTAAATGAATCACGCCACATT 4607 29 100.0 40 ............................. CTGTAATGTTTTTTAATCCTTTCTCTGAATAAATAATTAC 4676 29 100.0 37 ............................. GTTCTATGAGTGAGGACAATCTAAAGAAAGCTGCCTA 4742 29 100.0 34 ............................. ATAAAATTAACTGGAGAGAAGGCTCTTGTATTTT 4805 29 100.0 38 ............................. ACGCAAGTGCATTTTCAGAGAAAGAAAAGCAAAATGGT 4872 29 100.0 36 ............................. CCTAAAATTTCTATTATTTCTTTTTCGCTCGGGTAT 4937 29 100.0 41 ............................. TTATCAGAGAAAAACACTACTGTAGGGTGGGAATGTAGCTC 5007 29 100.0 38 ............................. ACTTCTAAGTCATCTATTGTGACTTTGTCTATAGCTTC 5074 29 100.0 39 ............................. GTATTTACACAAAACAAAGTTGTTTATGGAATTATGCCT 5142 29 100.0 38 ............................. CAAGTTCATTATTTGCAGCATGTTTCAAGTCAACAATT 5209 29 100.0 39 ............................. TTGTCAACCGAAAAGACTATTTCACTTTCTATTTCTTTT 5277 29 100.0 39 ............................. TGTTCCTGCCTTTGTTTTTTGCCTACCTTATCCTTGCTA 5345 29 100.0 38 ............................. CTGCATTACCTAATGCTTGGAATTCTAAAATTGCACCA 5412 29 100.0 38 ............................. CTGCATTACCTAATGCTTGGAATTCTAAAATTGCACCA 5479 29 100.0 38 ............................. CTGCATTACCTAATGCTTGGAATTCTAAAATTGCACCA 5546 29 100.0 37 ............................. TTAGTCTTGCAGCAGTTTCAATTGCCGATCATGCTAT 5612 29 100.0 35 ............................. CTATATCAGGTATCTCTATATCTATATATCTCTCT 5676 29 100.0 39 ............................. TAGAACTTGGAAAGAATGTTATTGATTATGGATTAAATC 5744 29 100.0 36 ............................. TTTGAGAAGCTTTACCTACAACCTCAGCCTTTAATA 5809 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 33 29 100.0 37 GTTTTATCTGAACTATGTGGGTTAAAAAG # Left flank : ATATTATAGGAATACCAATTGCAGCAGGTATATTATATCCAATAAATGGGCTTTTATTAAGACCTATTTTTGCATCAATAGCAATGTCTTTAAGTTCTATTACTGTAGTTTTAAATGCTTTGAGAATAAAAGTTATAAAGTTGTAATTAAAAGGATTAAAAAATTTTAAATTTATGATATAATCAATTTAAATATAAAATATGGCTACTTGGAAATAGAATAAGTAGTCCCATTTAGTTCAGATTTTATTTTTTTCTAAATTTTTATAAAACTACATAACAAATTTTGATATGTAGTTGCATTTTGAATAGAAAATATATTTTTGTGTAAGCTGGCTTTTTATAATAATTTGCGAGAATATAATAGAAAATATATTTGCATTACTGGAGGTTTGATGCAAATTACTATAATTTGCGAGGATTTTTTAAAATTTTAAAATCCTCTGAAAAAAGCTAAAATACTTGACAAGAGCAATTTTTTTTATTAACTTAAATTAACGG # Right flank : GTTAATAAAAAAGTTGATGGAATACTTCAAAAATTTAAAAATGAAATCAAAGAAGTTGGAGTCTATGAATTTATCCTAAATATTACAAGAAAACATACACCAAAACTTTATAAAAAACTAAAAAAAACCTGAAATAATTTAATTCTCCCACAATCAACTTAAAAAATCATAAATTTCTATAAATAGATAATGATAAAATAATAAGTATTGATTAATTATATTTAGAGGTTTTTAATTGAGTGAAAAAAATGAATGGCTTTATATTAATACTATAAGAGTATTATCTCTTGATCAGGTTCAAACTGCAAAATCAGGACATCCAGGAATGCCTCTTGGAGCGGCACCTATAGCTTATGTTTTATGGGATAAGTTTTTAAAACATAATCCTAAAAATCCAAAGTGGTTTAACAGGGATAGATTTATTCTTTCTGCTGGTCATGCATCTGCTCTTTTATACTCACTTTTACATTTATATGGTTACGATCTTCCTTTAGAAGAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGTTAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 18827-21457 **** Predicted by CRISPRDetect 2.4 *** >NZ_REFO01000001.1 Hydrogenothermus marinus strain VM1 Ga0180987_110, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================= ================== 18827 27 100.0 39 ........................... AGTCCTGAACAAGCTAAAATCCTTGCAAACAATGGAGGG 18893 27 100.0 39 ........................... TTGTCAATAGGTTTTATTAATTTAACATAGTGTTTTCGG 18959 27 100.0 37 ........................... TTTAGAAATACAAATCCAGAAAACAAACAACTCAAGG 19023 27 100.0 40 ........................... CTGAAGAGTGGCTTATTGATTATCTATATAATATTGATGG 19090 27 100.0 42 ........................... CCGAGTTCTTTTAGCTCTCTTAAAAATTCTTTTTCCTTTCGG 19159 27 100.0 37 ........................... AGTTACGCCATTATCAGTAGAATATTGCAAATTATGG 19223 27 100.0 39 ........................... TCACCCCGTGTTCGGGGTGATAGGCAATTACTGGATCGG 19289 27 100.0 40 ........................... TGAGCTATCCAGTTATTCAAAACACCATTTGCATCTGAGG 19356 27 100.0 40 ........................... TAATTTCAAAGAATGCAGGCGGAATAGGGATATATGGCGG 19423 27 100.0 39 ........................... TAATCATAATTATAACTTGACTGGTAAGTAAACAATAGG 19489 27 100.0 40 ........................... TGTTCTTTTTGATGAGGAGTTGCATCATGCTGGGTTAAGG 19556 27 100.0 40 ........................... CTCTTCTCTCTTGATCTAGGTCTATAACCCCCAAGTTGGG 19623 27 100.0 45 ........................... TCGATTTCTTTCTCTATTACCCTTCGTTTTGAGAAGGAATATAGG 19695 27 100.0 40 ........................... ACTTAAATCTATATCTATATTTTGAGTGCCACAATTATGG 19762 27 100.0 38 ........................... TAGGATGTAGTGAACATTTTGATAAGTGGTGGGATCGT 19827 27 100.0 39 ........................... GTCGTAATTTCAATATACTTTTTCTTATCTTCTGCTCGT 19893 27 100.0 40 ........................... ATCATCATATGGACTTGGTTTCAATTTTCTGCACATGAGT 19960 27 100.0 39 ........................... AATATGGTCTACATAACCGCCAAAATCATAATCACCAGT 20026 27 100.0 38 ........................... ATGGTTATGATGATTTAATATGGAACTGGATAAATAGT 20091 27 100.0 40 ........................... TATGTTCTGAGCAATATTTCTGCAGCAATTCAGCTATGGT 20158 27 100.0 38 ........................... ATAAATAGTTATACACCACAGCCATTGAGTTTTTATGT 20223 27 100.0 37 ........................... AAAACAAAAATTAGCAGAAAAAGGCAAGTTTGACTGT 20287 27 100.0 40 ........................... AGTCAGATATATAGAAAAAATTATTGGGAAACCTGCAGGT 20354 27 100.0 40 ........................... GCTTTTCCATCTTCTCCTGATACATAACCTTCTACTGCGT 20421 27 100.0 38 ........................... CCTTCTTCATTTACACCTCTTCTGATTCTTAACTTCGT 20486 27 100.0 38 ........................... CATATAATGAGCTTAAACAAGATATAGAGGCTTTAGGT 20551 27 100.0 39 ........................... CAGAATTTACTGGAGAGCCAAATGAAATGCTACTTTTGT 20617 27 100.0 40 ........................... AATTTTGCGGAAATCTTGAATTATTTAGCAATCTTGAAGT 20684 27 100.0 41 ........................... TATAAAGATGGAGAAATAAAGCTATATGGGGATTGGAAGGT 20752 27 100.0 37 ........................... CTGAATATTCTCAACTCAATAGTGTTTACTGGTTGGT 20816 27 100.0 39 ........................... ATTTAAAGAAAATCTTAAGTGATAAGTAGTAGATGGAGT 20882 27 100.0 38 ........................... TACGCCTGTCAGTGCTAATGATAGTGTGCCTAAAATGT 20947 27 96.3 42 ...................G....... GTAGATACATTTGAGAATATTTCTTTATCAGTATTTAAGCGT 21016 27 96.3 42 ...................G....... GTAGATACATTTGAGAATATTTCTTTATCAGTATTTAAGCGT 21085 27 96.3 42 ...................G....... GTAGATACATTTGAGAATATTTCTTTATCAGTATTTAAGCGT 21154 27 96.3 42 ...................G....... GTAGATACATTTGAGAATATTTCTTTATCAGTATTTAAGCGT 21223 27 96.3 41 ...................G....... ATAACTCATCGTTCATAGTGATATCGTATTCTACTATCTGT 21291 27 96.3 45 ...................G....... GCTTGTGATGAAGGACACTACTTGAAAGTAGATGAAAATAAGAGT 21363 27 96.3 41 ...................G....... AAGTAAATATGCCTATATTCGTCATAATCAGTTCTTTTCGT 21431 27 96.3 0 ...................G....... | ========== ====== ====== ====== =========================== ============================================= ================== 40 27 99.3 40 TTTATCTGAACTATGTGGGTTAAAAAG # Left flank : GCTGCTTCTATTCCTGCATGTCCTCCACCTATTACAACCACATCAAATTCTGTATCGTAAACCATTGAACCTCCAACATTTGGGAAATTAAATAAATAATTTATGTAAATTTGAAATTTTTTAAATATTCTTTAGCATAAGGAAATTATAACAAAGTTATTGTATAATTTTTTATGATATAATTAATTTATCTATAAAGATTGGCTACTTGGAAATAGAATAGGTAGTCCCATTTGGTTCAGATTTTGTTTTTATCACTTTTTTAAAATATACATAACAAATTTTGATATGTAGTTGCATTTTGAATAGAAAATATATTTCTGTGTAAGTTGGCTTTTTATAATAATTTGCGAGAATATAATAGAAAATATATTTGCATTACTGGAGGTTTGATGCAACTTACTATCATTTGCGAGGATTTTTTAAAATTATAAAATCCTCTGGAAAAAGTTAAAATACTTGACAAGAGCAATTTTTTTTATTAACTTAAATTAACGGGG # Right flank : GGGGGTTTTTGGTTGAAAAATTTTTTTAAATAAAGAAAAAGGTAAAGTATTTTTTCACTAATCTACTTTTATAAAGTTTCATCTTCTGGAAGATAATAAACTTCTTTTAAGTAAAGGCCTTCTGGTGGTGCTAAAAATAAAGCTTTTGTAGGGTCTTTGCTATCTATTATCTCTTTTAATGTGTTTAAATCAATCCTTCCTGTCCCTACATGAATTACATGGCCTATTATTTTTCTTACCATATATCTTAAAAAATGAGATGCTGATAATTCAAACTCAAGTAAAAATCCATCATATTTAAAACTAAACTCTCTTAAATCTACATCTTCTCTTAGATATTCTCCTTTCTTTGATAAGGCTATCAGATTTGGTGAGTTTTTTATTAAATCAACTGCTTCTTTTATTTTTAGAATATCTAAATCTTGAGATATATACCAAGCTCTTTTATATAAAAATGGGTCTGGATGTTTATATATTTTATAAAGATAACTTTTACCTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATCTGAACTATGTGGGTTAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //