Array 1 1163782-1164989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009353.1 Francisella tularensis subsp. novicida F6168 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1163782 36 100.0 28 .................................... GGCTTTCTTTAGCTTCTTCTAGAGTTTT 1163846 36 100.0 29 .................................... ATATAACTATCACCAGCAATCTGTACGAG 1163911 36 100.0 29 .................................... TAAAATGGTTGTTTAGTTATGTCAGAAAT 1163976 36 100.0 28 .................................... AATTTACGCCGTATTTCATTTCATCTCC 1164040 36 100.0 28 .................................... GCAGAGATCATTAAACCAATAGCACAGC 1164104 36 100.0 28 .................................... TCTGTAGAAATTCCTAGTTTTTGAGATG 1164168 36 100.0 28 .................................... GGCTCAAGTAATATCAATAATTTAGAAT 1164232 36 100.0 28 .................................... ATTTATGTGATGACTGGTGTTGCTAATG 1164296 36 100.0 29 .................................... ACAATTATATCCATCACATACCCCTCTAA 1164361 36 100.0 28 .................................... TGTATTTTAGATAGGTTTCAGCAGAAAT 1164425 36 100.0 29 .................................... AGTGCTTAAGAAAATCGAAAGTATTTGGG 1164490 36 100.0 30 .................................... TATAATGAAAATACGATTATTACTTAGAAG 1164556 36 100.0 32 .................................... ATTGTCAAAACATAAGCAGCTGCTTCAAATAT 1164624 36 100.0 28 .................................... GTCGCTTTATCATCTTTATACTCCTTAA 1164688 36 100.0 29 .................................... TTTATCTGCTCTCTGGCTACTTTCAACAC 1164753 36 100.0 30 .................................... GCGTGGGTGTTGGGCTTTTTATTGCGTTAT 1164819 36 100.0 28 .................................... CTTGCAAAGTGTAGTGTGTTACACCTTA 1164883 36 100.0 32 .................................... ATTGTCAAAACATAAGCAGCTGCTTCAAATAT 1164951 36 86.1 0 C........................A.A..A.T... | CC,T [1164972,1164977] ========== ====== ====== ====== ==================================== ================================ ================== 19 36 99.3 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGACAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAAGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGTATTTGCTAATATAACACTACTTGAGAATTTATTGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATATATTGCGGTGATAAATAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGATCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1825768-1826658 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009353.1 Francisella tularensis subsp. novicida F6168 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 1825768 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [1825775] 1825839 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [1825864] 1826047 37 94.6 36 ........C...A........................ TTGCTGTATTGGTATTAATCTACATTTTTTAGATTT 1826120 37 100.0 34 ..................................... CCAACTCTTGAATTAAGTGTTGCTGTTGCGGGTT 1826191 37 100.0 34 ..................................... ATGTTTACATCTGCTGGAACGATTCGAGGCAACT 1826262 37 100.0 35 ..................................... GAATTTGAGTATCAGTTTCGTAGATTTTAATCATT 1826334 37 100.0 36 ..................................... AAAACAAAAAGGTAATGTTTATCGTGTTATTAATCA 1826407 37 100.0 34 ..................................... CAGCAGGGTCAGGAGCGAAATTAACTCTATGATT 1826478 37 100.0 34 ..................................... CTCCTGCGATAGTGCGAGACGATAACGTAACTGG 1826549 37 100.0 36 ..................................... ATCTTTTCTTGATTGTAATAAAGCTCTGTCTATCTT 1826622 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 11 37 95.6 48 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : TGATAGTCATGTATATAAAGAAAGACATTTGATAGAGAATTTCTTTTCTAAAATTAAGCATTTTAGAAGAGTATTCTCTAGGTTTGATAAAACCATTTCCGTATATCTAGGCATGATAAAACTAGCTTGTACTTTTATTTGGTTACGATGAATATTAATTTTTGTGCACAGAACCTATTTTAAAGACTCTTTTATCTTGGTTAGTTTGAGCTTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAACTGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATTAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : GAGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTAGTTTGGAAATTAATATAACTTGTTTGTTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCACTAAGACTGTTGATTTAATCTGCAAATAAATTTATGAA # Questionable array : NO Score: 4.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-1.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //