Array 1 56-3197 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTN01000037.1 Indiicoccus explosivorum isolate S5-TSA-19 S5TSA19.ioncontig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 56 33 100.0 32 ................................. GGCTTTCGCCAGTAACCCCATATTCGGATGTT 121 33 97.0 33 ................................C CGCATGATCTTCAGGCTGTTCACCTTCCAACTG 187 33 97.0 34 ................................G ATGAATTGCGTCAGGTTGACCGTCGTGAGGTTAC 254 33 97.0 34 ................................C CTCTAATTTCTCCTTAACTGCGTTGGGTATTTTT 321 33 97.0 33 ................................C GCACACGCACCGCATTATGTCCGTTCGGCAGTC 387 33 97.0 33 ................................G ATAACCTGCCGACTGTCCAAAGATGCCCGACTG 453 33 100.0 33 ................................. GTCCGAAATTCAGGGTTTAACAAAGGGGTCGGC 519 33 97.0 34 ................................C ACGCTATCTGTTTGGCTTCCTCATCAGGAAAACC 586 33 97.0 34 ................................C GCAAATAAAAAAGGGGACACAAAACAGCGGTTAA 653 33 100.0 32 ................................. ATCACTGGATAATTATCTTCTTTGTCTCCTAC 718 33 100.0 32 ................................. TGGCGAAGTGCTTCCATAGTAGTTATCACTCC 783 33 100.0 34 ................................. GTATCGTAATCCTCATCAGCCCGGCGTAGCTCCG 850 33 100.0 31 ................................. GTAATCTGTTTACAAAAGACAAAAACGGGGT 914 33 100.0 34 ................................. TTGTGTTGCTGAACATTCCGGTGAGCATCAAGCC 981 33 97.0 32 ................................A TCACGACCATCCAAGACATGAGCGTCAACGAA 1046 33 97.0 33 ................................C GGGTCAATGAGCAGTACGCTGAAGAATTGACTG 1112 33 97.0 32 ................................A TGGAGCTGTGGGAAGGGTTTAAGTGGCGAGAC 1177 33 97.0 33 ................................G CGTCGAACGGGACTTTCAACGTCCGGAAATCAA 1243 33 100.0 33 ................................. GTTTGCAGGAGATGGGGCAAGCTCACAAGCATT 1309 33 97.0 33 ................................G CCTATCTGGAGCTTGGCGAGTACGATTTGACGC 1375 33 97.0 33 ................................G ATTGCACTAGCGCCCGTCAGTATCACCGTCGGG 1441 33 97.0 34 ................................A ATAAATAGGAGGCAATGACAATGAAACAGAAAAC 1508 33 97.0 33 ................................A ACGACTGATACAGGTACTATGCAGATCGAAAAA 1574 33 97.0 34 ................................C GGTAGAAGCATCTATGTCAAAGGTTTTTACACCT 1641 33 97.0 34 ................................A ACACAATCGACCAGCGATTTTGTAGAAGTATTGC 1708 33 97.0 34 ................................C ACATAGTGTCTACCAAAGCGATATATCGTACTTA 1775 33 97.0 33 ................................G TTAGTTTGTCGTGCGTTGGTTGCCAACGCCCGC 1841 33 97.0 34 ................................A GCGCGCAGGCCGTGCGGCTGCTTGGCGTCGGTGA 1908 33 97.0 32 ................................A TAATCGATTCATTCAGGGCTTTCCAGTCCTCT 1973 33 97.0 34 ................................C CGTTCTCGTCCTTGATTTTGACTTCATTATTAAG 2040 33 100.0 34 ................................. AATGCTGAAACGGTTTGCGGAACAGTGGCTACTG 2107 33 97.0 34 ................................G GAAAATCATTGACCACTACATCGCCACGGATTGG 2174 33 97.0 33 ................................C CGGACGGGTTCCGGCTTTGGTTCCGGCGTCAAG 2240 33 97.0 32 ................................A TACGTTATGTCCGTCACATCGTTGATTTCTTC 2305 33 100.0 33 ................................. CTGCGACCGGCTCGGTGACTATTCCGAATAAAC 2371 33 97.0 33 ................................A AATAGTATTCAATGTGATCCTCGAACAGGTAAA 2437 33 97.0 32 ................................C AGATCCTCGGGACTTATGAAGTCGGCTGCAAA 2502 33 100.0 33 ................................. ATGTCGACGGCGAGCGCAAGCAATTCGCTGGCG 2568 33 97.0 34 ................................C CCTCCCTATGTGTAGGATTTCTATCTGTAGTATT 2635 33 97.0 33 ................................A ACTTCTAATATTGTGAATAAATTTTCGCTCGGT 2701 33 100.0 32 ................................. AATATTCTAACATGGGTTGCCAACTCTTCTGG 2766 33 97.0 33 ................................C TATCCTTATACACTCCACTTACAATAGCGTTCC 2832 33 97.0 33 ................................A TACATCACCAATTCTTTTCCGCAAATACATTTG 2898 33 97.0 33 ................................G TAAATTTGTGCTGTGTCAAAGTCATTTTGCACA 2964 33 100.0 33 ................................. TTTTCATTCACAAAATCCCAGAAACAATGTGGA 3030 33 97.0 34 ................................A GAATATCAATACGGATCTGATTGATGAAGCGGAT 3097 33 97.0 34 ................................A GTGATGTTATAGAGCGCATATAATTGCGCCTGAA 3164 33 97.0 0 .......................A......... | T [3194] ========== ====== ====== ====== ================================= ================================== ================== 48 33 97.8 33 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Left flank : GTGGGTGCGTGGATTGAAATACGGATAGCATTAAGGCAGACAGCGAGGAAAAGGCG # Right flank : TTGCTATATTGCCATCCGAACAGTGCCGCAAAGCAGCCTCCCTCGCAGGTACATAGGTTGAAATAATGATCAGGTCGTTCGAAACTCCTCTTAAGCGCTCCCACCAATCTGCACAGCCTTTAGAAGGTCTTGAATCACTTTATTCGCAAGCGAATGTCTGGAATGGACATTTGCTGCCGAAAATACGAGACGCCTGCGGGAAAAGCAGTTCAAGTGAGACCCCGCAGGGAGCGGAGCGACCGAGGAGGCTCACGAACTGCCCGCGGCAAGCGAGTATTTTAAGCCAGCAAATACATTCCTTCCTCAAGAATGCAAACTAAATTTAATAAAAAAACACTTCTCTTTGTCGAAATTTGTTGTAAAATAGACGGATACCGCCGAAACCTGACCGAAAATAACGGCGGCAGGGGAAGATGGGAATGAACAAACACTATAAAAAACTGCTGGACTTTGCTGAACAGAAAGGCTGCCGCATCATCCACGATGATACGCACCGCATC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.50,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 154760-155122 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTN01000008.1 Indiicoccus explosivorum isolate S5-TSA-19 S5TSA19.ioncontig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 154760 33 100.0 33 ................................. ATTTCTCCCGGCTGAAAAAGAAGCCGGTTCGGC 154826 33 97.0 33 ................................C AAATAAGTCAGCAAAGTTGGCCCTCCCAACATC 154892 33 97.0 34 ................................C GTCATTAATCACTTTCAAATCCGTCAAGTTGTTG 154959 33 100.0 33 ................................. GTAGGTTGTACAGGCTTATTCGCATCCATCAGG 155025 33 100.0 32 ................................. GCGACCGTGACAAAGTATACCGGCCCATTCGT 155090 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 6 33 98.5 33 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATG # Left flank : CTTGATGAATATCCGCCATTTTTCTGGAAGTAGGTGAAGATATGCTGGTCCTAATCACTTATGATGTAAGAACGGTTGAAGATGCAGGTAAAACAAGGCTGAGAAAAGTTGCGAAAAAATGCCAGGACTACGGACAGCGCGTCCAAAATTCTGTCTTCGAATGCATTGTTGATGAGACTCAGTTCAAACAATTAAAAATTCAATTGGAACAAATCATTGATCCAGCCTTCGACAGCCTTAGATTTTATCGGCTTGGAAACAACTACAAGGCGAAGGTGGAGCACATCGGAGCAAAAGAATCCATGGACATTGAAGGTACTCTCATCCTTTAGTGCGAGGATCATGCGCTCACGATTTCCTTTATAAGCTCGCACTAAAAAGACAGGTGGATTCCATATTTTCAAGAGCAATAATTACAAAAAAAGTAAAAAAAGAAGGTAACACTGCGGAAAATACACAAAAAATCGATTGTTTTTAAAAAATATTTACGATTTTCCGCT # Right flank : TATTTTTTATAGTGTAAAATTTGAATTTTAAACGTCGCACCCCTCGTGGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.50,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //