Array 1 157785-159315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXGM010000007.1 Escherichia marmotae strain E690 NODE_7_length_205786_cov_325.329470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157785 28 100.0 32 ............................ TGGAGGCGATCCGAGTAATTCGGGAGTTTTCC 157845 28 100.0 32 ............................ CAGATAATCCGGGGCGCACCGCTTAACTACAA 157905 28 100.0 32 ............................ AATGGCGGAGCGGTTGAGGCTGGCCACTGCGG 157965 28 100.0 33 ............................ CTGTTTCGTCAACAACTCCCCGCCTTCTCAGAC 158026 28 100.0 32 ............................ CGTTGACGCGCCACCATGTCGGCTCGTAGAAA 158086 28 100.0 32 ............................ GACAACGCGCAAGGTGAACAATAAGGCGCTGT 158146 28 100.0 32 ............................ TTTGGTGAATAGACCTCACCGGGGAATGACAC 158206 28 100.0 32 ............................ GTCGAAAATCGACGGGATTATCAACAGCACGG 158266 28 100.0 32 ............................ TTGGGCGACGTCCCCATCAGTTTTGTGACCGG 158326 28 100.0 32 ............................ AGGGGCATTTGCGGCAAGGCCTGGTTGTTGCT 158386 28 100.0 33 ............................ TCCGTACTGGACAGCTCACGGTGGCCCATAAAC 158447 28 100.0 32 ............................ TGAATCGTCCCGCTGTTGCTGTGTGCCGTCAG 158507 28 100.0 32 ............................ GAATATAACAATCCCCGTGCCGGGTGATGCCC 158567 28 100.0 32 ............................ GGGCGGGATCATCGCGGCCAGTCTTTCCACTT 158627 28 100.0 32 ............................ GATGCGCGGCGCGGGGCTTGAGGGGGCAAGCG 158687 28 100.0 32 ............................ GTACCAAAAACTGACCTGCGTAAATTACTCTC 158747 28 100.0 32 ............................ AAGCCGCAGCACCAGCCGCGACGGCAACCACC 158807 28 100.0 32 ............................ CACATCAGCGTTATTCGCTGGCAATCGGGGTT 158867 28 100.0 32 ............................ AATTGCCAAACGTCGCAATATATGCCGATTCA 158927 28 100.0 32 ............................ GCATGTACGCACAGGCAATCAACTACATCAAA 158987 28 100.0 32 ............................ TGGCTCGGACGTGGGAGGAAGAAGGGGACAAA 159047 28 100.0 32 ............................ TCCTACGCGCCGCCAAAAACGGCGTCGCTAGT 159107 28 100.0 32 ............................ TGGTTTCTCAACTAATCCAGCGTGTTCCAATA 159167 28 100.0 32 ............................ AGAGGGTAAATTAGAGCAGCGCTATAGATTAA 159227 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 159287 28 92.9 0 ....................T...C... | C [159310] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGAATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173607-174474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXGM010000007.1 Escherichia marmotae strain E690 NODE_7_length_205786_cov_325.329470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173607 28 100.0 32 ............................ CTGAACGAACTGAAGCGCCAACAGCTTGCAGC 173667 28 100.0 32 ............................ AATCAGGTCGTCAATTTTTCGCGGCTGTGTAA 173727 28 100.0 32 ............................ GCTGGCTTTAGCGCGTGAACAGTACTGTTAAC 173787 28 100.0 32 ............................ CAGCTCAGAGAAAACCGCTTTCAGCCTTGATA 173847 28 100.0 32 ............................ AGTAGAAGACACGCAGATCGGCTGGAAAAATG 173907 28 100.0 32 ............................ GGATTACCCTGGACAGCCAGGGATGTTAACAA 173967 28 100.0 32 ............................ CAGCAGTACAGCCTCTTCCATGCCGTCAGCGC 174027 28 100.0 32 ............................ GGCAGTGTGGCCACTTTTACGTTACGCGTAAT 174087 28 100.0 32 ............................ TCGGAAAGCTTGTCAGCGTTGCTCACGTAACT 174147 28 100.0 32 ............................ AAACCCCTCTGTCGTTACTTTGCATTCAGCCG 174207 28 100.0 32 ............................ ACAGCAAACGGCGGGTGTATCGACTCGACGGG 174267 28 100.0 32 ............................ AACTGCGGCCTTTGAGTCGGTCCCCATCGCAT 174327 28 100.0 32 ............................ ACGATGCTGAATAAAATCACTGATATCATGAA 174387 28 100.0 32 ............................ GTAGTGATAAACTCCGGCGCACCAGACGACTG 174447 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACTACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGCCGTATGCGTTCTGGTCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCATACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //