Array 1 43956-45814 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSJV010000018.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
43956 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT
44017 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA
44078 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT
44139 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC
44200 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG
44261 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
44322 29 96.6 32 .........................G... AATTTTTTATCCTCATAAACAGCCTCAGAAAA
44383 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC
44444 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT
44505 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG
44566 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG
44627 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC
44688 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA
44749 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT
44810 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG
44871 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA
44932 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA
44993 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA
45054 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT
45115 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA
45176 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT
45237 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC
45298 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA
45359 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA
45420 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT
45481 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG
45542 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT
45603 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC
45664 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG
45725 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA
45786 29 93.1 0 .A..........................A |
========== ====== ====== ====== ============================= ================================ ==================
31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA
# Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 61316-62198 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSJV010000018.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
61316 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT
61377 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG
61438 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC
61499 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG
61560 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA
61621 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC
61682 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC
61743 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC
61804 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA
61865 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT
61926 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT
61987 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT
62048 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC
62109 29 100.0 32 ............................. CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA
62170 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGTCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//