Array 1 226723-225753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFP010000002.1 Faecalicatena contorta strain 1001302B_160321_D10 NODE_2_length_250180_cov_33.3942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 226722 33 100.0 33 ................................. GATAGGTGTATAATTTTGAATTGTCATACTTTG 226656 33 100.0 33 ................................. ATTTCCCCAGCCCATTGCTCTGCCATTGCTTTG 226590 33 100.0 32 ................................. ATTACTAAAATTTCTTTAACTAATACCATTAA 226525 33 100.0 33 ................................. TGATAAATTCTTATATTTTGTACGTTTTGAGTG 226459 33 100.0 34 ................................. TGCCAGTGTCATGTAATTAGCCCACCTCCCAGCT 226392 33 100.0 34 ................................. CCGTATACAGAGGTTAGGACTACTGTGCAGATGG 226325 33 100.0 34 ................................. ATGTCATCTACAACAATACTGTTGAGCGTCCGCA 226258 33 100.0 34 ................................. TGTCAGATATTTTTTGGCGTAAAAATCGTACTGG 226191 33 100.0 36 ................................. TAGAATAATTATACCATACTATTTTTGTGAATTGTG 226122 33 100.0 34 ................................. AAAGTTTTGATGAATTATTAGAAAGAACGGAGGG 226055 33 100.0 34 ................................. ATTGGAACCAAAAGTACTATCGATGAGGTTCCAG 225988 33 100.0 35 ................................. TCTGACCGAATATGTTAAAAACATCGAACAGATAA 225920 33 100.0 34 ................................. CTGCTATTAAATTCTGTACATACTTTTCATGTCT 225853 33 100.0 35 ................................. AAAGTAGCATTGATTACCTAAATGATAGAGAGTTT 225785 33 93.9 0 ....................C..A......... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.6 34 GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Left flank : GTTTGAAGAAGGCGAAAAATTGATTTTCTTTGATGCCTATCCCCAGAGTTTTTCTATATCTTTAGATGCACAAAGTCCGCATTATAAAGACTATTACGAGCGGCAGGCTGCACCGACTGATAATCAAAAGGTAGTGCCCATTACATTTATATGTATAAAAGATGTTACATTTAAATTGCATATCGCCTGTCAGAATACAAAATTGTGGAAACAGGAAAAAACACGGATAGATGAAGCAGTAAAATGTATGGTGGAAATATATGGATTAGGGGCTAAAACAGCATTGGGGTATGGCGTAGGAGAAATGCAGTAAGTGTAAAAACAATAAAGTGCGAATCGGTAGCGGACAGGAATTTCCCGGGAGATTCGCACCTTAAAAATAAGGAGGGGAAGGAGATATAGACGGAAAAAATAGAAATTTAATGAGATGAATCAATTGATTTTGTGGGAAATGTATATTATTATGATCTTGAAGTAAATCAAATTTGTTTATTTTTGCT # Right flank : AAATAAGATTACCAGCTAACCCACCGGGAAAAGCCATAGTCACCATCCTAGTACCTCGAATAATAATTAATTTGCTGTTAAACTAACCTAAATTTTCGATGTACTAAGTATGGTTTAAAATTTAAAGAAAATAGCAATTATTAAGGACAAAATTATGTTAAAAGCAATTATTATTGGAAGTCCTGGTGCAGGAAAAAGTACATTTGCCCGGAGGCTTAGAAATTTGACAGGATTACCGCTATATTACCTGGATATGCTGTGGCATAAGCCGGATCAAACAAATATCACAAGAGAAGAGTTTGATACGCTGTTGAATGACATTATAAAAAAGGATAGCTGGATTATTGACGGTAATTATCAGAGAACACTTGAAGCCCGTCTGAAAGCATGCGACACCGTTTTTCTAATGGATTATCCGCTGGAAATCTGCCTTTCAGGTGCAGAATCCCGCATAGGAAAAAAACGTGAGGATATGCCATGGGTCGAATCGGAATTTGATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCGCTTGCGTATGCGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACCGCTTGCGTATGCGGTGTGGATCGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30012-30429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFP010000003.1 Faecalicatena contorta strain 1001302B_160321_D10 NODE_3_length_248439_cov_32.1505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 30012 31 100.0 34 ............................... TCCTAAATTTTAAGTTTCCAGTCAAGTTCCGCCC 30077 31 100.0 33 ............................... CTGCAAAGCGATGAAGTGTTCCTGCTGGTACGT 30141 31 100.0 33 ............................... TCTTTTTCTGTAAAGCTCTCAGTCCCTGTATCC 30205 31 100.0 34 ............................... TTTTAGTTCTTTGCCTATGTATCGGTCAAAATCA 30270 31 100.0 34 ............................... AGCCAAATACACTCGGTCATATTCTTCGCCGACT 30335 31 100.0 33 ............................... CTCCAAAGTCTATACCTAAAATAATCTCCGCGA 30399 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 7 31 100.0 34 GTCGCTCCTTCGCAGGAACGTGGATTGAAAT # Left flank : GTGTTTACGGTTACGACCTGTGGTGTCGGATACCGTAACTATGCAAGTGGTGCGGCTAAAAAGATAAAAGGAGCGGACTATCTTGGAAACTTTCAATGCCGTGGCTTTGATACATTTGGGGTGTTTGGGAAGTTTGGGGGAATAGCGAAGAAGCATCCTGATAGGAAGGGTATGGAGAATGCAAGGCAGTTTATTAAGGGAATAATTAATGTATGAGCGGTATTCCTTAGGGATGAAACATATCATTGAATCGACTAAAACAAATCGAATCATGGGAAAAAGCGACGGTTCCAGAGCTGTGTGATTAAAGGGCATAGTAGAGATTTTAAGTGCGAATGTCAAGTAGACATAAATCCCTTAGGAGATTCGCACCAAAAAAACGTGAAAATCTGAATGGTTTGAAGTGAATGCAAAAGGAAGAGCTTGCTTAAAGAGAATAGACTGGGTATAATTGTCTAATAGGAATGAGAGGACAAAGGGGATATTTGTGCAATTTTGCT # Right flank : TAAGCTCTACCCTGCAGCAAGGTGTACGGACCCGAGAAAAGTAACAACAAAGGGCATGAAGTGATAATCGCGGTGATTTTTTTATACTGCCTTCAGCTAAACCGTTATTGTAAGGATATGAAATTCCATTTTTTACACTTAAATCTTTCAATATGCCTTCAACAAATGTTTGTAATTCAGGTATGTCATGTTTTTTGGCAGACTCTATCCAGATATCTAATTTCTCTGGTTTTTTAGAAAATATAACAATATAGAATTCTTTTACCAACGAGTATATTTACACAGAACTAAATGGGGAGGTATGTCCGTGAACGAAAAAAAAGAAAAGGCAAAACCATTAGCACAGAAAGCAGCAGAAGAAATTATTAAAATAATAAAGGAAAATAAGATGGAGCCGGGTGATCGCCTGAAAAATGAATATGAGTTGGCGGAGTTGCTGAATGTGGGGAGGGGAACTGTCAGGGAGGCTATCCGCAGTCTTGTATCCAAAAATATTCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCGCAGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : NA // Array 1 38921-43068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFP010000026.1 Faecalicatena contorta strain 1001302B_160321_D10 NODE_26_length_61208_cov_31.406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 38921 32 100.0 34 ................................ ATTGTGAGTTTTTGTTTCTCATCGCACAGAATCA 38987 32 100.0 33 ................................ CTCTTCTTTTGGTGTGTAAATGTTGATGTCATC 39052 32 100.0 34 ................................ TCATCGCACAGAATCATAATTGGGGTTTTTTGTG 39118 32 100.0 33 ................................ CTGTAACAGTTGACAATTATCTGTTATATATGG 39183 32 100.0 36 ................................ ACCTACAACTGCTACTGTTGCAAAAGGGAGTGTAAC 39251 32 100.0 35 ................................ TGCGTGATGAGTGCGGAATAACTGATCCTAAGACC 39318 32 100.0 33 ................................ GTTGCGATAAATTGGTAACCATAATTTATCGCT 39383 32 100.0 35 ................................ TTTCTGAGATACAGGCCGCCGGGTAGTGACGGCCC 39450 32 100.0 35 ................................ ATGCTGAGTTTTTGGTTCTCGTCGCACACTATCAA 39517 32 100.0 34 ................................ CGGCTAATATGCACCCAGTAGTCTGTACGTAATT 39583 32 100.0 33 ................................ TATGCTGTCATCATAAACAACAAATGTGTTTTC 39648 32 100.0 37 ................................ TGCATCTGCCGCAGCCGTTCCAATCGTGCTTGATACG 39717 32 100.0 35 ................................ AAGCCACTTTAAGGCATCCGCAACCTCGTCAGCAC 39784 32 100.0 34 ................................ ATCGCAAACGATCATAAGTGGAGTTTTTTGAGCG 39850 32 100.0 33 ................................ ATCGTTAGCTTTTGTTTTTCATCGCAAACGATC 39915 32 100.0 34 ................................ ATTTTGAGTAAAAATTTTGTTACCCCAAGCGTCT 39981 32 100.0 36 ................................ AAGAGAGCATTATGTTTTTAACAGAGTGCCGGAAAA 40049 32 100.0 34 ................................ CGGATTTTGTAAGGCTTTTGATGATGGCTATTCT 40115 32 100.0 33 ................................ CCAATTGTTTGTTGTGGTGCTATGTTTTGGTAT 40180 32 100.0 34 ................................ TTAAAGAATTGGCCATAAATATGTACAAATGGGA 40246 32 100.0 35 ................................ GTCATACCCAGTACACGTTAACGCGTCCTCTCTAT 40313 32 100.0 36 ................................ TGAACATTGATATGCTGATTATTGAGGAATTGGATG 40381 32 100.0 34 ................................ TGCAATGATCTGATTATGTATATTGTTTAATACC 40447 32 100.0 35 ................................ AGCAATCTTCGGGGTATACCGATGGTACCAGAATC 40514 32 100.0 34 ................................ CGTTCCGTAGTGCTGCAGATAATACTCGCGGCAC 40580 32 100.0 34 ................................ CATTTGGCGCTAACAACTTAGTACAAAACAGTTT 40646 32 100.0 33 ................................ TTCTGGCATCCGTTCAGCATAGCTTCCATTACT 40711 32 100.0 36 ................................ CTTTTTAGGGACAATGCACCATCGACAATGATTCGG 40779 32 100.0 35 ................................ TTATTAAATATCTCATATAAGGCATATAATATACA 40846 32 100.0 34 ................................ CCAGGTGGCTGATGCGATATCTGACGCTATAAGC 40912 32 100.0 33 ................................ ACCGGACCATATATGAAAGACAAAGGGAAGGGC 40977 32 100.0 35 ................................ AGGTACGAAAACGGAGAAATCGAGAAGGTTCCTGC 41044 32 100.0 34 ................................ TCCCGACATCACAATAAAATGCGTCAAATTGTTT 41110 32 100.0 33 ................................ TGCGCAGGCATTATGGAAAGAGCTGCAGAATTG 41175 32 100.0 35 ................................ CGCCTTTAAAGTACTTATTTTGGCATCCGAAGCTT 41242 32 100.0 33 ................................ CTCCGGCGGGAAGATTGCAGATAGGACAATTAA 41307 32 100.0 33 ................................ ATCGGTTCTGATTGATACTATTTGATACTATTA 41372 32 100.0 33 ................................ TGAATAATCTCTTGACAACTGGTTTATCACATC 41437 32 100.0 38 ................................ CGGAAAATTACGATAATCTATATAACTGCGATTACATT 41507 32 100.0 36 ................................ CGCATCTTGAATTTTTGCCATCTGCTGACGTATAGC 41575 32 100.0 34 ................................ ACGTGAAACATTAAAAAGGGGCGGATCTAAATCC 41641 32 100.0 35 ................................ ATAAAGTCGGGATGTTATGATTACCCTGCCAATTC 41708 32 100.0 35 ................................ CATTCTATGAATTATCAGAAATATTATCCGACAAC 41775 32 100.0 33 ................................ CGTGAATCCAAGCCAATGCCAAAGAAATCCATC 41840 32 100.0 34 ................................ TTTGCGGATATCCGGGACGGAACCGTAGAAATAA 41906 32 100.0 35 ................................ CTCAGATCTCCCATCAAAGCATCGAGGCTTTTTGT 41973 32 100.0 33 ................................ TCATAGAGCTGCAGGCTGATTTTGCGGTAAATG 42038 32 100.0 33 ................................ ATCTCCTTTACTGCATTATACTCCATATGTCGC 42103 32 100.0 36 ................................ AAGTTGCTTATCTGTGTACGTTCTTACAGATACACC 42171 32 100.0 37 ................................ TCATTGCAATAATATCCAAACCAATAACCAGCGTCCT 42240 32 100.0 35 ................................ TCATTGCAGTAATATCCAAACCAATAACCAGCGTC 42307 32 100.0 34 ................................ CGCTTTGGAGTACTTGCGGAAGATTTTGTGCAAT 42373 32 100.0 34 ................................ ACTTATGGATATGGTAACAATGGGGCTTTCCATG 42439 32 100.0 34 ................................ GATTCTTGAGCCAGAATATCTGCGCTGTGACATC 42505 32 100.0 33 ................................ AATTGAGTATTTAATGACGGGTAATGAACCTGT 42570 32 100.0 35 ................................ CGTCTACATATGATTTTGTTACACCACCAGTCCCA 42637 32 100.0 34 ................................ TGCGGAAACTTTTGCCGCCTGTGCGGAAACCTTG 42703 32 100.0 35 ................................ AAATGTTCCGGAGGTATTCAGCTCAAGTTCCAGCT 42770 32 100.0 34 ................................ CCATGTTCAGCAGCATCGGCAGCATGACAGCCAG 42836 32 100.0 35 ................................ ATAGTTTCCATCCCCCTTGAAATCTTTTTATTTTA 42903 32 100.0 34 ................................ AACCCACATCAATTTCTTACGTTTCTTTTTAGGT 42969 32 100.0 36 ................................ AACTTTATCTGCGGCGGGAGTCCGTGCCAGGATTTC 43037 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ====================================== ================== 63 32 100.0 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : AAAGTCAGATAAAACGTGGTAGAAACCCGCAGGTGATTTCGGAAATGTCAACCGTATCACCTGGAAAAAAAGAAGAAGGATATTCCTGGAATATAACAGGACAGTTTAAAAAGGGTATTAGGTTAATCTGATATCTAGCGGCTGCAAATCATCTTCTTTGTGAGTTGTGGATTTGTTGGTGAGGTTATTACGTTTTTATATTTGTAGAGAGAAAATTATATAAAAGAAGCAAAAAAACAGTATAATTAATGAGGTCGCGATTTAACAATTGTCTGCGAGTAAAATGGTAATCATTAATCTTATGAAGTAAAAGTATAAGGTGCGAATGTGAAGTGAACATAAATTTCCTGGGAGATTCGCACCAATTAAAAGAGTAAGATATAGTATATAGATAAAAAAATTAGAAATTTATGCGGAATGAATTGTAATATGTACGAGAATAGTATAAAATTTTAGAAGAATAGCATAATTATTTTACATCTAAATTGTGCAATTTTGCC # Right flank : TGCGCTTACAAAACCATAACCAGCTATCCTTAAGTAAGCGTCAAATATATGGTGTATTTCTTTTCCACTAAAAATTAGTGCTAGAGCTTTTAGACTTTTTGAAGTCTATTCTTAAAAATCTAAAATACGGAAGTCTGATATGGAAGAACGTAAGCGATTGTGTCAATATGCATGTCCTTGCCAGTGCGGGAAGAATGGAAGATTGTGTCGTTAAAGAGATGATGGATTTGTTATTGTAAAAATTTATGTGTTGTAATTGACTTTGTAGTATGAAATGGATATAATATGATTAGAATATTACTACCATTACAAAATCAAGGAGGTGCCGTTATGAATATCCGTCCATCTGCAGCAATACGTCAGAATTACAATGAGATTGCGGAGATGTGTAGAAAAACCGCAGAACCGGTTTTCCTTACTAAAAATGGCGAGGGTGATTTGGTTGTTATGGATATTGAAACCTATAATAGACGGGAAAAAATGCTGAAGCTTCGTGAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 44523-45548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFP010000026.1 Faecalicatena contorta strain 1001302B_160321_D10 NODE_26_length_61208_cov_31.406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 44523 32 100.0 34 ................................ TTTTTTGATTAAAAACAGCTGTATAACATACTTA 44589 32 100.0 33 ................................ TATTATTTTAGTAGCATTACTGCCTCCTAGCGT 44654 32 100.0 34 ................................ TGCGTGCGCTTTTGAATTAGCATAACTGTAAAGA 44720 32 100.0 33 ................................ CTTTTATTTTCTGAGCTATAATAAAATAGCATC 44785 32 100.0 33 ................................ TGTTCCAGTCATGAGCATGACGCAAGATTTTGA 44850 32 100.0 34 ................................ TGTCCATACTTCTACGTTTGTGATCGTTTTCTTT 44916 32 100.0 35 ................................ ATTATGTAGCATTCCGTAACATTAACGCCAGTCGA 44983 32 100.0 34 ................................ ACGTGAAACATTAAAAAGGACGGATAGAAATCCG 45049 32 100.0 34 ................................ AAAACGCCTTTGACCCCAACCGGAACCATATATT 45115 32 100.0 35 ................................ CATACTGTTGCATCAGGCTTTTGGTCAGGCTTACT 45182 32 100.0 37 ................................ AGCCTGGATACAATTGTATTTATCATACTCTCAGCCT 45251 32 100.0 35 ................................ CGGAAAATTACGATAATCAGTATAACTGTGATTAC 45318 32 100.0 34 ................................ AGAAGGATAAAAACCGCTTAGGCGGTAGAACGGA 45384 32 100.0 35 ................................ CGGTGTTATTTATGTGTAGGCATAAGAGCCAGAAA 45451 32 100.0 34 ................................ AACTCTAAATCAATTATATATCAGTCATTAATTG 45517 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 99.8 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : GGCAGGTGACGTTTTTTCGTCAAACAGAAGTTCCCTATATTGACTGATTACAGCTTGATATAGGGACCTTTTTAAATTTTCATATGGTTTATGAATTAAAAGGTTGTTTTGATGAATAAAAACAGATGGACAGAGCTGTGTGCAAATTATAGGTATTTATAGGTGTATTTTTCGGCGTAACGGCTACGGGGCTGAAGGCTCTGTCATAAAGTTTGTTTATATTTTTCGGCTCCATCAACATTATCTTATTTTGTCAAGGCACTGAGGTTTACCTACTTGGGATGTGAGTAAATGGTAAAATTATTATACGAATTATAAAGTGCGAATGCTAAGTGGACATGAATCTACTGGGAGATTCGCACCAAATAAAAGTATAAATTGTAATATAAAATACAAAAAAATGGGGATTTGTGCGAAAAGAATTGTAATATTTAAGAGAATGGTATAAAATTTTAGGGGAAAAGCATAATTCTCTTATGCATAAATTGTGTGATTTTGCT # Right flank : TTGACCTTTATACTGCAAAGCACAATACTGGACCACGCCACTCCCTGCTCAGCAATAAGGTACAAGATGCCGATATGAAGGCACAAGTTGAGCCATGATAAGAAAAGGAGATCTTCTTTACAGTACTAGCTTTGGATTTATTATGTTCACTATGTTAGAAAAAAGGAGGAACTCAATGAGATATTTAGCGCATATTGCAGAAGATTCAGGAGAACAAACGTTAAAGGAGCACTTGACAAATGTAGCCGATTTATCAGCAGAATTTGCAAAGGCCTTTGGCTGCTATGATTGGGGCTATTGTTGTGGCATGCTGCATGATATTGGAAAATATTCCAAGGAATTTCAGCAACGTTTGGCAGGAAGCGATATACGTGTTGACCATTCTACCGCTGGGGCAAAATTATGCTATGAAATAGGCGGCATGTATGGCTTTCTTAGTTACTGTATAGCGGGGCATCATGCAGGCTTGCCAGATACGGGAGAGGACTCGAATACAAGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 55475-58483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNFP010000026.1 Faecalicatena contorta strain 1001302B_160321_D10 NODE_26_length_61208_cov_31.406, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 55475 32 100.0 34 ................................ ACGTGAAACATTTTTGGTACAAAATTCTTAACTT 55541 32 100.0 35 ................................ AGTGCGGATTTGGGGATGATATTCCTGCCCAAGAC 55608 32 100.0 34 ................................ TGCGTGATGAGTGCGGAATAACTGATCCTAAGAC 55674 32 100.0 33 ................................ CACTCGATGAATTACCAAAAATATTATCCGACA 55739 32 100.0 35 ................................ TTTAATTGGATGAGGATTGAGAAGCTCTTGTTTGA 55806 32 100.0 34 ................................ TGGAGATTTATGATCGGTATTTTCTTCCTTGCCT 55872 32 100.0 34 ................................ TCTCTGGTCAAAATCATATTATTCTCCTCCCTCT 55938 32 100.0 36 ................................ AAAATTATATACCTATCCGTATAGCTATATCGAAAT 56006 32 100.0 33 ................................ ACAAAAAACAAACGCAACTAATATGTCTAAATT 56071 32 100.0 33 ................................ CATAAGCGATTGTGCCAGAAGATGATGCAATTG 56136 32 100.0 33 ................................ ATTTTGGGTAAAAATTTTGTTGCCCCAAGCGTC 56201 32 100.0 35 ................................ TTGGAGTAAGTACAGTGTAACACATGATGTGTCTC 56268 32 100.0 36 ................................ ACCCACAACTGCTACTGTTGCAAAAGGGAGTGTAAC 56336 32 100.0 34 ................................ TATGAGCATCGAAAAGTTTATTGAAAATGCTGAA 56402 32 100.0 33 ................................ ATTGATAAGCACGTAGGTTCTACTTGCCAATGT 56467 32 100.0 35 ................................ ACACTCAACAGCGCTTGATATAGTTTTTTGAGAAT 56534 32 100.0 33 ................................ ATATCAAAAAAATGATTCCGGGCTTGCGTTATT 56599 32 100.0 34 ................................ AGCAAGCATATTTTGCAATATTGATACAGATTCT 56665 32 100.0 34 ................................ CTCGTAACTGACTCGAATGGAAATGCTGAGTTTA 56731 32 100.0 36 ................................ GTGCTTCAAAAGCAAGATATCCCTATCCAGATAATC 56799 32 100.0 35 ................................ TACTGCTGGTCGTGCGGCGCGGGCGGTGACGTAGT 56866 32 100.0 36 ................................ TCTTAACCGCCGCCTGCAGTCTTGCATGCCACGGTG 56934 32 100.0 36 ................................ AAATGATACTAAGTAACCCTCTGATATGTTTTTTCA 57002 32 100.0 33 ................................ CAGTGGCTATTAAGGAAGGGGACGTAGTAGACG 57067 32 100.0 34 ................................ CTGCCATTTTGATACATCAATAATCATATATACC 57133 32 100.0 34 ................................ ACTCTATGAATTACCAAAAATTTTATCCGACAAC 57199 32 100.0 35 ................................ TCAAAAAACAAACGCAACTAATATGTCTAAATTAA 57266 32 100.0 34 ................................ CACCAGATGAGGATTTTAAATTTGGGTTATCGGT 57332 32 100.0 33 ................................ GGCACTTGCTCAGACATTTTGTGATCGCCATGC 57397 32 100.0 34 ................................ AAATAGCTTATTACCGACAGCAATCGAACCAGCA 57463 32 100.0 33 ................................ TGTGCGATAAATTGGTAACCACAGTTTGTCGCT 57528 32 100.0 34 ................................ TTTTGCACCCTGTCTTCTTGCATTTAATCCTATC 57594 32 100.0 34 ................................ CATTTGCGATATTAAACGCATCCCCGCCCGTTTG 57660 32 100.0 34 ................................ TTTATTCTTACTTTTATTATATCACAAAATGAAT 57726 32 100.0 34 ................................ AATATAGGGCAAGAAAGGAAAGGGGACGAGTAAT 57792 32 96.9 34 ......T......................... GCTTTATCAAACAGTATCAACAGTTACAACAAAA 57858 32 100.0 33 ................................ CGACCATATCAATCAAAAAGATCGCGCAGCTCA 57923 32 100.0 34 ................................ TCGTTCCTTAGATTCCAACCACTTTACCAAATCT 57989 32 100.0 34 ................................ TCCGCTGATAAACAGACACTTGGTGCCCAACATA 58055 32 100.0 34 ................................ GATATCTATTTTCAAAGAGAATGAAAACGCCAGT 58121 32 100.0 36 ................................ TATGTTCTCTGATATTTCCGCTAATGGCTTGGTCAC 58189 32 100.0 34 ................................ CGCTGTATTAGACTCTATCCAGCCTTCTGCCACA 58255 32 100.0 34 ................................ AGCAAGAAATTAATAGGAGAAACGGTGGAGAACT 58321 32 100.0 34 ................................ TGTGCTGCTGCATTCCCGTCATAGTCGGTAGCAT 58387 32 81.2 33 ............A......C.CA.T...C... AAAGACCACCACATTTATCCCTTTTTCAAATAT 58452 32 71.9 0 ...........TA.CA..AC...A.AC..... | ========== ====== ====== ====== ================================ ==================================== ================== 46 32 98.9 34 GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Left flank : CATTTATTGCACAGACCGTAGTGAAACATGATGGTTTCAGGCATTCTGTCTCCACTTCGTTTCATGTTATCCGTGCGCTACTGGCGCACGGAACCTTTATCATAGATGAATTTCAATGAGCTAGATACGTAACAGTAATGCTTAAATTATTACCTTACGATAACGGTATAATTATATTACTGTAGGAGAGTGTAGTTCACTTAGGGGCTGCACCATGTAGCCCTTGGGGAATATAATTATCAGTAAACTGTAAAAATATAGAAAATATCAAAAGAAAATTGCTTATGGGAATGTTCTGATAGTATTTATGGTGTTTTAGGTGCGAATGTGAAGTGAACATAAATTCCCCGGGAGATTCGCACCATATAAATCTGTAAAATATTATATTGAGACGAGAAAAAAACGAGTTTGAGCTAAAACAATTGTAATTTCTAGGAAAATGCTATAGAATTTTAGGGGAAATGTATAATTTTCATGTGTAAAAATTGTGCAATTCTGCT # Right flank : TTTTCAATGTAAAGGGATCTGCATGAAACAGGACTATATAAGAAGCATTTTATTTAATTAGGGCAGTCTTAACAAAAAGAACCGTTTTTTCACTAATGTTCTAATTTAATTAGCGATATTATATATAGATCAATAGATCCTGACATAATGTGTAATAGCAGAGAAATAGACTATTGGATTGAAGATTATAGGAGTAAAGCATTTGAGTGTAATATGCTTACGTTAGAGTATCAGAGTTTTGTTTGTAAAACTATTTGAAAAATAAACAAGAATAGTATACGTAAACGTTCAATAGTGGATGCGTCCAATAAAGAAACTGCTCATAAGGATGGCTACACCCAGTTTTTTATTAAAAGCAAGTGATGCGTCAATAATTGTCAGGCATCATTATATAAATGAAAATAAATTAAGCAGGAGGGCCGTTTTGAAAGAAAGATTAAAACAAGTAATGGCAGCAGAGGCGCATGTCATACAAAAGATGGCGGAGGAGATTGATTACG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //