Array 1 144432-145314 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQW01000002.1 Escherichia coli strain GER_CD71_1507_Eco_079 EC-BIM079-S5-VE-xxx-2015-033-PK_S44_263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144432 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 144493 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 144554 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 144615 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 144676 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 144737 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 144798 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 144859 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 144920 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 144981 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 145042 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 145103 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 145164 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 145225 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 145286 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 171013-171958 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUQW01000002.1 Escherichia coli strain GER_CD71_1507_Eco_079 EC-BIM079-S5-VE-xxx-2015-033-PK_S44_263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 171013 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 171074 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 171135 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 171196 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 171257 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 171318 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 171379 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 171440 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 171501 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 171562 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 171623 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 171684 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 171747 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 171808 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 171869 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 171930 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //