Array 1 151188-149719 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAN01000006.1 Haladaptatus paucihalophilus DX253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 151187 30 100.0 37 .............................. TCCCAGACTCAAGGCGAGTTTTATCTTCTCTCTAATC 151120 30 100.0 36 .............................. CACGAATACGAGGACCCGATCAATGACTGACGAATA 151054 30 100.0 35 .............................. CTCTTTTTCCAGTTGTTTCCGTAGCCTCGCGATGG 150989 30 100.0 35 .............................. CTCGGGCGTCCACTCGGGGAACGTGGACGCGTCCT 150924 30 100.0 38 .............................. TTGTTGACGATGGACAAACGGCGGTTGTTGAAGTTGGT 150856 30 100.0 36 .............................. ACCCGGAGATGCTCAAAGACCTCGGTGAACACGATG 150790 30 100.0 35 .............................. GAACCCGCGCGTGCACACCAGCATTTATCGCACAG 150725 30 100.0 34 .............................. AACTCAAATGCCGCATCCCATGCATCCGTCGCAT 150661 30 100.0 35 .............................. AGCGAATTCGCCGCGTCATCGCAGCGGGGATGCGG 150596 30 100.0 35 .............................. CGCTCATAGGAACCGATCCTCTACGCTCGCATCCG 150531 30 100.0 35 .............................. CTCGTCGAGGACGTCCATACCGCGTGGACGAGTGC 150466 30 100.0 33 .............................. AGGATGAGTAACATTGTCGCTGAGAATACGATA 150403 30 100.0 34 .............................. TCGGAGTCCACTTGATTCCCCGTGTGTCTCTCCA 150339 30 100.0 38 .............................. AATTTCGTCGGTGACGAGATTCTTCTTGATTGCCGATT 150271 30 100.0 37 .............................. TGGATTCGTAGCACGCCGTCGTCTAACAGATACTCCG 150204 30 100.0 33 .............................. TGGTCTGAATCGCCTGTATCGTGGCTTGATCGC 150141 30 100.0 36 .............................. GTCTACGACGAGGAGACCGCCGAGGAAATCAACGTC 150075 30 100.0 36 .............................. CTTCGATGACATGGCCGACGTTTTCGAGATGCTGTT 150009 30 100.0 33 .............................. TCTTCCCGAGAAGGCTGTTTTCGCGGCATCATG 149946 30 100.0 36 .............................. GACTTGTGGAGTGGCCTAAGGATCTCGAACAGGAAA 149880 30 100.0 36 .............................. CTCGTGTATCGCGTCGACGCTATCGGCGTACTCTCC 149814 30 100.0 36 .............................. CGCCTCGTAGGGGTTGAGTCGGTCGAAGGCAGAAAT 149748 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 100.0 35 GTTACAGACGAACCGTAGTAGGGTTGAAGC # Left flank : GAGGAAACGGTCGAACATCCACGATTGGATCGAAACGTGAGCTACCAGTACTTGCTTCGCATAGAAGCGTACAAACTCAAGAAACACTTGCTCACTGGCGAAGCCTACATCTCGTTCAAACGGTGGTGGTGAGATGGTTTACATCGTTGTTGTCTACGATATGCAGGCAGATCGGACACGTCTCATGCTAAACTTCCTCCGGAAGTACCTCACGCACGTCCAAAACTCCGTTTTCGAGGGAGAAGTAACAGAAGGCGACCTCGAGACGATTCAGAACAAGACACGTGAAACACTCAAGTCCGACGAGTCAGCGATCATCTACCGAATGAGCTCGGAGAAGTACGTTGATCGAATGGTTGTCGGTGAGGACCCCACCGACGACGCACGGTTTCTTTAAGTCGCCCGTCGACCCCCCGGGGGTTCATGGGGTATTGGCGGTCGACGGAAACGACCAAGTGTGAACAGTGAGAAGAGCCGGTGAGTGTCCGAAATTGGGCATG # Right flank : GACGTCTCCCAGGTCGAACAGCTTCTCGCGGCGACGTTACAGACGAACAGAAATAGGTCACTTACTATGATTTAGTTATCGAGATATCGACATCAAGTAGAAACTGAATATGAACTATTCCCGAGGGTCTTCTACAAATTCGTAAAGACCTCGATTCACACGTCGAATCCAGCCTGCATCGACCAGACTTCCAAGTGCATCGTTAACGCGCTGTTTTTCTAGACCTGTAACATCTCTTATTCGAAGTGGGTTAACCCGCTGTTCGTCTTTGAAGACTTGCAGAACAACCTCCTGATTCTCGGAGGGGCTAAACTCTTCATTAACCACAGTTACTATAGTACTCATTCCGTCACCTCATTAGTCCTTTCGTGCAGAATTACTTAGTAATTTCCAACGTATTTCTGTAGTCCGTTACTAAGTAACGCTTATTAAGATGGCGCTACAAACAGAGTATAGAAGCGTGGATGGTCAGAAACTCTGGCCGGGTGGTGGCACACCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTAGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 160912-161534 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAN01000006.1 Haladaptatus paucihalophilus DX253, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 160912 30 100.0 37 .............................. TTCGCCCGGTTCGTTCTCGCACCCCGGCAGTCGGCAG 160979 30 100.0 36 .............................. TGGAACCGCCCTTGTGGCACAGCAGCAAGCCGATGA 161045 30 100.0 35 .............................. GATGGGTATCTTCACATCGACTACAACGCAACCGA 161110 30 100.0 35 .............................. CTGTTTTTCGAGGCGGACAGAGGTTATCTCTGCCA 161175 30 100.0 36 .............................. TGTCATTATTCGGTCCTCCATGTGCTCGTGAATCGC 161241 30 100.0 36 .............................. CTATTTGGTAATGAGTTAGGGACGAATAGAGGACTT 161307 30 100.0 34 .............................. CTGCCGTGTGTCGGCCACTGCCTGCAAAACGCCC 161371 30 100.0 37 .............................. ACCGACCACTCGTTACGTCCCTCCCATCTCGCCCAGC 161438 30 100.0 37 .............................. GAATTCATCGCACTGGTGGCGTTTGGAATTTACGCCA 161505 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GTTACAGACGAACCGTCCTAGGGTTGAAGC # Left flank : AAGTGACGTGCCATTCCCGTGTTCGTCATCGAATTTGGTTCCTTGGAGCGCACGCCATATCCGACCACGAACTTTATGATGGAAGTTTGTATCTGGTGCAGCGTCGGCTTGTGCGACCAAGTCAACTAACAAACGCATCCTCACACATCACCTCCTGTAAAATCAATACAGTTTTCATCTCTACAGATTACTCTTGTTATTGTATGTATATATGTTTTTATCATGGTCTGACATAGAATCTGATCAAAAGATGGGCCAGTCGCAACAGCTCCTACCGTTGGCTTCCTACCAGGGGCTTCAACCCGTGTGATTCTACTGGATGATCTGAAATCTTGATAAGGTGATTCCTACTAATTCGGCATTCTACAAGGTACCAAATAAGAATATATTTCTTTAAGACAACCATCGACCTCCTAGGGGAAGAGGGGTTATTGGGGGTCGACGGAAACAACCAAGTGTGAACAGTGAGAAGAGCCGGTGAGTGTCCAGAATTGGGCATG # Right flank : CATCGCGTGATGGAACGCTCGGCCATCTCTTCCATCACTCGATAGCCATCGTTCTTGTACGCACAACCGTAGTGGGTCGCGAGCTCTCGATATCCGAGTCGTGCAACCATCACGTCATTCGTCTTGGCGACGTTCTTCGCGTGTTTGAGCACATCGAGGTACTTGTTCTCGACTTGCTGACTCTCAGCGCGCTTCTCGCGGAAGTTGACGAGCTCAGTGTTCTGTTCCGAGCGCTGGACTGTCTCAAAGAGCTGACGGCCTGCATTCGAGCTACACAAATCGAGAAGTCACTGGCTATTCAAGACGGCTCTCGCACGTTGGACATAGGTGTTCTTCGACCAACTTCGTGCCGTACTCATCTCATCGAGTAATGACTCCGCGTCAGCTGGTGATACAATCTCGTTTCGCACAAGCGCAACGAGCAGCATCGGCGTGGTCACAAGCCGAGTATCAACGAGTGACGCATGGATGAGGGCAAGCCGATTGAACTCGTCACACAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTCCTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //