Array 1 428505-428049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH668177.1 Gluconobacter thailandicus strain WSH-003 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428504 29 100.0 32 ............................. CACTTCCACGGCAGCAACCTGCGCAACCTCTT 428443 29 100.0 32 ............................. CGGACGGGCTACACTGAGGGCGTTGGTCAGCC 428382 29 100.0 32 ............................. CCGTATCGCTACGGTACAGGTTTCCGTCCTTG 428321 29 100.0 32 ............................. GATAGAAGACGTGACAACATTACGCGATAGCA 428260 29 100.0 32 ............................. ACAGGATCTGGCACTATTTACTTGTCCCCACT 428199 29 100.0 32 ............................. TGCTCACCCACCACACAGCCCATCGTGGGCTC 428138 29 100.0 32 ............................. GGCGGCCCGAACGTGTTCACCACGTCCTGGAT 428077 29 89.7 0 .......................A..T.T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCCTCGTCCCCATGATCGAAGATGTTCTCTCCGCAGGAGGCCTGTCACCCCCTGGAGCACCGGAAGAGGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAACGCTCCACCGCGACTACGAGGGCGGCTCGCCGTCTGGCTGCTGGAGATCCGCGCAGGCGTATATGTCGGTACCTATGGCCGAAAAGTACGCGAGATGATCTGGCAGCAGGTCTGCGCCTATATTGAACAGGGAAACGCTGTCATCGCATGGGCTGCTCCCAATGACGCAGGCTTCGAGTTCGACACCTGCGGCGCCAACAGACGATGCCCCGTGGACCTTGACGGATTTCGTCTGGTCGAGTTCGGTCCAGAAGCTGCCCTCCCCCTCCTGCCCGGCCCCCTCAATTCACCACGAAACCGACGCTGAAAAATCGGTAGCTTTTTGAAGTGGAAGATTTGCACCCATAATCATATACTTACAAACAAGG # Right flank : TTACCGTCAGGCTTCTGAGCCCTGCACAACCGCACTCATTCTCCCCACATTCTTGCACACAAGGAGACAGATCATGAGCAAGCTCAGTAAAGAGGAACGGGACAGCCTGCGTGACAGTGAATTCGGGCTTCCTGAAAAACGGGCCTATCCCGTCGATACAAAGGCCAGGGCCCGGAATGCGAAAGCGCGTGCCACGCAGGAGCTGGAACGGGGGCTGCTGACACCGGAAGAACGGGATGAGATTGACCGGGCAGCAGATCGTAAACTGAACGAAGACTAAGCCAGAATCAGAAACGGCCCCGGATCACTCCGAGGCCGTTTCATCATTCAATTCAGCACTCAGTGAGCCTGCGCTGCCCGCAATGGAGCATCTGCCGGAACATCCTTCAGCGGAATACCCTGATACTTACCCGTCAGCGTCTTCAGGAACGCCACGATATCTGCAACATCCTGGTCAGTAATATCATGATCCGGCGTTTCGTAACGGGCCATGGCACGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 502925-502121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH668177.1 Gluconobacter thailandicus strain WSH-003 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 502924 29 96.6 32 ............................A ACGTCACAGGCGCTTTTATGACCGGGCAGATC 502863 29 100.0 32 ............................. GCGCCTGACAGAATTGCCAGGCTGATGAAGGT 502802 29 100.0 32 ............................. TCGTTGTCCGGCGACATTCCCAACCTGCTTAT 502741 29 100.0 32 ............................. ATTATGGGCAAAAACGAAACCCCGCAAAACGT 502680 29 100.0 32 ............................. AACCGGGCACGCATACTGCGGGTTTGCCCGTA 502619 29 100.0 32 ............................. AACCAGCGTGACGTTAGCGGCGTGGCTCTCGG 502558 29 100.0 32 ............................. GTGCTGTTTTGGACTTTTTCGGGCCCGGTCAA 502497 29 100.0 32 ............................. CCATTTGCGCGGCCGTCACCAAATCCCGTGAA 502436 29 100.0 32 ............................. AAGGACAGCGCAAGCGGCTTTCAACAGGTACA 502375 29 100.0 32 ............................. GTGATTTTCCGGGTCACAGATACCTCCCATTC 502314 29 100.0 32 ............................. ACGCCGGCAGCCGTGTAGCCGGTCAGAGCAAT 502253 29 100.0 32 ............................. GACGGCATTTTTCAGAAGCACGCGCGCATCAT 502192 29 93.1 14 ................T........G... CGTGGGTCTCCGGC Deletion [502150] 502149 29 79.3 0 ...........G.AA.......C...GG. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 31 GTGTTCCCCGCATGTGCGGGGATGAACCG # Left flank : TCGGGAACTGCGCGTCCCGTTCCGGACGGCTCATCATGTCACGGGGCGTCTGGTCGGACTGGCCGAGCAGCGCGGTTGTGATCTGGCGGATCTGTCCCTTGAGGATATGCAGGCCGTGGAGCCGGGAATCAACGCTGGTATTTTTGATGTTCTGACGGTTGAATCCTCACTGGCTTCCCGCACCAGTCTGGGCGGAACTGCTCCGTCCAACGTGCGCCAGCAGGCTCAGGCCTGGCTGGAGAAACTTGGAGACGCTGCATGACACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCGCTCAGCACTGGCCTGAGCGCTTGCGGGAAGAAAGGGGCGCCACATGCACCCGGCCCCGCTTCCGACATCACCTATCCCCGGAGTTATCCGCCTGAATAACGGGCTTTCAGATAAGTCTTACAGGGGCCGAAAACAGGCCATAAAAATCGGTAGATTTTTGAGGGTGGAATTTTCCCTTTTCTGTCAGTACCTTGCCAGGAAGA # Right flank : ACTACTGGTGGCCGCAACTTCGATCTCGCCAAATAGTCCTCGCCTACTCGGGCGTGGATCTACCGCGAGAAGCGATTCCACTTTCTTCAGCCTCAGCGTTTTTCTGAAAACTCTACAGATGCAACAGCCGCCATCAGCTGTCCGCCAGAGCCTTGACTACCAGCGGGTGTGCCAGAACGTCCTTTGCAGGCCAGCCCATCGCCCTGAGCGCTCGAACCCCTTCTGCACCATCCCTTTTGGAAAGCTTCTTTCCGCTCTCATCCAGAATAAGAGCGTGATGCCTGTACTCCGGTTCAGGCCATTTCATCAGGGTCTGAATTACACGATGAATGGATGTCGCAGCGTAAAGGTCCTGCCCTCTCGTGATGCAGGTCACGCCCTGAAGGGCATCATCGTGGGTGACGCACAGATGATAAGACACGCCCGTATCTCTGCGTCCCAGAACAATATCACCAAATTCATCCGCACGCCCCGCAATCCGACCATGACCCGCTTCATAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //