Array 1 46-1964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYBM010000042.1 Klebsiella pneumoniae strain MRSN742743 MRSN742743_contig00042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 107 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 168 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 229 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 290 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 351 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 412 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 473 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 534 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 596 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 657 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 718 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 779 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 840 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 902 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 963 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 1024 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 1085 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 1146 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 1207 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 1268 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 1329 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 1390 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 1451 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 1512 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 1573 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 1634 29 100.0 32 ............................. ACCTACCAGATCCACACCGGGCGCTGCGAAGA 1695 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 1756 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 1817 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 1878 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1936 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGTAACCTCGTTTATGTGCGCGTTTTATAGTTGCG # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34822-35033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYBM010000041.1 Klebsiella pneumoniae strain MRSN742743 MRSN742743_contig00041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34822 29 100.0 32 ............................. AAGAACCTTTCGATCGCTGCAATTATCTACGC 34883 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 34944 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 35005 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : TAGTCATTTGCCGGTGACGGGAACCCCATAGCGTGTTCCCCGCGCCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //