Array 1 1575788-1577640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019655.1 Paenibacillus larvae subsp. larvae strain Eric_III chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1575788 32 100.0 35 ................................ AATATGGAGCATCTGATGGAACTGGTTTAATGCGG 1575855 32 100.0 33 ................................ CCATATACCACAAATGACGCGACCCAGTTGATA 1575920 32 100.0 33 ................................ ATGAGTCTCTGTTTTGCAGTAATAGCCCGGGCT 1575985 32 100.0 36 ................................ GAGAGATTCTACCCGTTTTACTTCCGACAGCTTTTC 1576053 32 100.0 35 ................................ TTTTTCCACATCCTTAAACCGGGCAAAATATTCCG 1576120 32 100.0 39 ................................ ACATACGTTGAGCTATTCGCGGGCATCGGAGGATTTCGA 1576191 32 100.0 33 ................................ ATTTTCTCAAAAGTTTTCCCGTCAACATGGACC 1576256 32 100.0 34 ................................ TTCTTAGCCATGTAAATAATCCCCTTTCGCTAAC 1576322 32 100.0 37 ................................ TTCTCTTACATCAACAATCCCTTTATAAATAAAGAGT 1576391 32 100.0 37 ................................ CCAAAGCGTTAGTTCTCTTCGGTTTACTTTGTTTTTA 1576460 32 100.0 36 ................................ TTTTAATATCGCATTGCCTAATCGCGTTTTAAGATC 1576528 32 100.0 34 ................................ TCAAGCTCGGCGACCTCGGCTCTGCGTTGGTCTA 1576594 32 100.0 35 ................................ CCTTGGGCGTCGAAAAATTCAATACCCGTTTGCTT 1576661 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 1576728 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 1576795 32 100.0 38 ................................ TACAACGTCCCTTTTAGCTCCGTTTAGTTTCTCGTACA 1576865 32 100.0 33 ................................ GCTAATGGAAAACAAAGAGAATCATATATCAAA 1576930 32 100.0 34 ................................ CTTGAAAACTCCTGTTTTATTGTTCATCATGGAA 1576996 32 100.0 37 ................................ TCGAAGTAATCACTTCCAGCCCGGGATATCTTTAGGC 1577065 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 1577131 32 100.0 35 ................................ TGGCCGCCCCTTGGATATTCGTACAACGCACTTTC 1577198 32 100.0 36 ................................ TAATTCAAGTGATACGACCATAGCCGCATTGATGTA 1577266 32 100.0 36 ................................ ATGTTTGCGTCAACGACGGCCTGTTGCTGCTTGCTC 1577334 32 100.0 38 ................................ ATTAAAAATTTACCAAGTCAAGCCATTGACTGGGGAGC 1577404 32 100.0 37 ................................ ATCCGGTGCATCAGAGATTGGCTCAACTGTATTTCAA 1577473 32 100.0 35 ................................ CATCACCGGGGTGCAGATTTATTGTCAGCGATTTT 1577540 32 100.0 38 ................................ ACCATGAGTTTGCAAAATACATTCAGCGAGAAAATCAC 1577610 31 78.1 0 ..............-.T.C...CTT...G... | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 99.2 36 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTGTTAATTACTTACGATGTGTGTACGACCAATAGTGATGGGCAAAGAAGGTTGCGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGAGTCCAGGACTCTGTCTTTGAATGCAATGTAGATGCAGCCCAATTTGCCAGTTAAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGTTTTATCAATTAGGCAATAATTACAAGAACAAGGTTGATCACATTGGTATGAAAGAATCCATTGATTTGGAAAAGCCATTGATTTTCTAATGCGGATGCATGGTGCGAATGTGAAGTGCACATGAATTTCCTGGGACATTCGCACCATGCATTTACCATATAAATCCATTTTATTGTCTATAGGCATTTTGGGATTCATTCAAACTGAACAGAAAGATCATTTTTTTGAATGGTGTGATCAAAATATGTTTAGTTTTGAATATTTCTCTCAATTTTCGCT # Right flank : TGGAAATATTATTTCCACCCATACTTCCAGGTTAGACTACAAATTGATTTACAAGATAGTAATCGGGATACCTAATAACTCCAACATTTACAAGATGTTTACTGCTTGAGCTACTATCGAACCAATATTGAATATCAGTACCTCTTGTCAAATATAATGCCTCTGATTGGGCATCGTGATCAGAAAAATTCATGATTACTTGTTTGCAAGATGAACCGATTTCTGATGAACAATCTTGCTGGGTAGCTGCAGATGATGGAATTGGAATTATGAGTAAGGCTGCAAGAATAGAAAAAATAATTGCCATTTTGGATTTTACATGTTTCATCATATTCATATTAGCTTCCTTTGGTTTGAATTTTTACACCCTCCACACAATTGCAATCCTTCAAGCTTGATATATTGATAGAGGGTTCCATCCCTTCCTGCCACAAAACCACATTCACTCCTTTATTAGTCTATTATTGTAAATCGTTCTCCTTAAGATCTATTAACCTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1974382-1976158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019655.1 Paenibacillus larvae subsp. larvae strain Eric_III chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1974382 32 100.0 38 ................................ ATTTCTGTTGTACGTAGTGCTTTCAAACGTCCGGATAA 1974452 32 100.0 34 ................................ AGTCTCTGAACTTGTAGTGGCTGGAATCACTACA 1974518 32 100.0 36 ................................ CTTGATCTCAAGCTGAACAACGGTGATGAACGTCTG 1974586 32 100.0 35 ................................ TCAACATAATTTTGTTTTCTAATTAAAAGTAAATC 1974653 32 100.0 34 ................................ AAAAAAACAGTGAGCGGAATCAGAAAGCAAGCCG 1974719 32 100.0 35 ................................ AATGATGGAGCAATATAAACACGCAACCAATTATA 1974786 32 100.0 33 ................................ ACTTCTTTTTCTTCAAAGGTGACCGTTTTGAAA 1974851 32 100.0 35 ................................ AATATCCACGAATTAGGTTATACTTGACGTATCTG 1974918 32 100.0 38 ................................ TCGCAATCCGTGGAATCCAGTGGGAATCAGAAGAAGCC 1974988 32 100.0 36 ................................ AATATTAAGACCATGTAATTGATTAACATGTTTGAT 1975056 32 100.0 35 ................................ TCCCTACCAAAAGGAGGGTAGGATTAGTGGAAGTT 1975123 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 1975192 32 100.0 33 ................................ ATCTTGATTAAGATACAAACTATCAATTGTGTA 1975257 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 1975326 32 100.0 33 ................................ CTCACCGGCCCCTAGCGTCAGTTCGTTCCAGCG 1975391 32 100.0 34 ................................ ACAACATATCCTGATCAAGCGCGTTTAGTAACCT 1975457 32 100.0 35 ................................ ATTTTAATTTTCCGTTCCCCTCGTGTTGTTATCGT 1975524 32 100.0 39 ................................ AGATGCGGTGATCGTTACGCGAGTACGTAATTTGGTCAC 1975595 32 100.0 34 ................................ ATACGGCAATGAATATGGGCCTCAACAAGTTCTA 1975661 32 100.0 35 ................................ GCTGAACTCGATATCCATATCTGGAGATAACTCTT 1975728 32 100.0 33 ................................ GGCGATCAAATGGAACCCGGGGAAACAATTAGA 1975793 32 100.0 34 ................................ AACCATGTAAACGACGACTTTGCCGTGTATTCTT 1975859 32 100.0 37 ................................ CTCAACGCTTCCAGCAAAAATAAACCCGGTATTGCCA 1975928 32 100.0 36 ................................ ATCTCTCTATCATGGAAAAAAATAGACGAATAAAGG 1975996 32 100.0 34 ................................ TTCTTCCGTTTTGGGCCAATGTGGATAGTCTGCT 1976062 32 100.0 33 ................................ ACACTGTCCGTCAGAAAAAACCGACTGTTCCAC 1976127 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 27 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATCTCCCTAAAGTTTCCAAAATGCTGGCTGCACATGTAAATTGTGAAGATTTCACGGAAGAAGTTATTGCCAAAGGGCTTGATGAGAGGACATTTGGATTGTGGAATTTTCCTTTCCCTTAAAGGTAAATATGCCATGACGTCTCGCGCTAGTAATGGAAGACGATATAGGGTATTATGGAAGTGAAAAAGAGTAGGTACTTTTATAATTGAACGTTACTGATACATCATAAAAAGTGATAGGGAAGATATATGTTTATCAAACATTATCCAGGTAACGAGTATATAAAGAAGCAATGATTTGGAAAGGTTTATTTTTTTCTGGTGCGAATGTATAGTTCACATGAATATCCCGGGAGATTCGCACCATTATTTTACCAAAAATATGCATGCATTTGGGTTAAGTATATTTGATTGCAATAAATTTGAATAAAAAAGTCATTAAATTGAATGATTTAATCAAAATACGTTCAATTTTGATTGTTTTATTCAAATTTCGCT # Right flank : TTTAGAACGGCCATTTCTGTTTTTAAATGGGCCAACATAGGACAGATGAGGGAAAACCTGCTAGGAGTGAAAATTAGTTAGCAAAAAATCGTGGAAGGAAACTCAATGTTGAACCAGTGACCGGATTAGCCCGTATGCTTCATGACATGGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1976806-1977375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019655.1 Paenibacillus larvae subsp. larvae strain Eric_III chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1976806 32 100.0 35 ................................ CAGAAGTACCCCTTGGGACATATGATGTGAAGATT 1976873 32 100.0 35 ................................ GTGAACAGACCTCATGATGACCAATAAATGATTAC 1976940 32 100.0 34 ................................ CATTTTAGTAACAAAACTGGAATAGCTTTCGATA 1977006 32 100.0 33 ................................ TCCTGATTCTATGACAACGTCAAAATATTTCTT 1977071 32 100.0 34 ................................ TTTCGTAATGTAAGTTTCATGTTTTCCAGACAAA 1977137 32 100.0 38 ................................ GTCAATATGGGATCGATAAATTTGGAGCGAATTGATAA 1977207 32 100.0 35 ................................ GAATTTGTAAAAGTTCTACAAGATGAAGATATTAC 1977274 32 100.0 38 ................................ ACCACAATATTTTTTAGGCCATTCCAAATGCCCTTGAC 1977344 32 90.6 0 ........A.........A............C | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 99.0 35 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATCATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATCATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGG # Right flank : CCTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGATCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTCAAACTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATCAGCGAAAGAGGCAGAAAACACATCTTTGGAAAAAGTAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGAGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTGTAAAAATTACTCCCTATTAATTGATCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2046389-2047424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019655.1 Paenibacillus larvae subsp. larvae strain Eric_III chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2046389 32 100.0 33 ................................ CCAAGTCTGGTAAACCAATGTTGACCTGCTGGA 2046454 32 100.0 35 ................................ GGACAACTGGACATATCAAAATGATTGTAGAATTG 2046521 32 100.0 36 ................................ GCGAAACACCCCACCGTTAATTTCACGCAATTTCCC 2046589 32 100.0 33 ................................ AGACGGTACGTTAATCGTACCAATGACAAGGAG 2046654 32 100.0 36 ................................ ATTTTCCCATCATTATCCGTGATGGAGATTTTAAGC 2046722 32 100.0 34 ................................ ACCCAAAATCATTTTTTCTGTGTCGGACAGCTCA 2046788 32 100.0 34 ................................ TTGTGTAAAAAACTGATTTCGAATGAGCGCCAAA 2046854 32 100.0 36 ................................ CTCATAGATTAAATCTTCCATGCCAAACATTTTACG 2046922 32 100.0 38 ................................ CAGTCCCGCAACATGAATGGGACTTGTGGGCTCTTGAC 2046992 32 100.0 35 ................................ CATGATGATGTCAAAACGCTCAACGATGTCGCCGT 2047059 32 100.0 34 ................................ TTTCGCATCGGTCACCCTGCGAAAAAATACATAA 2047125 32 100.0 35 ................................ AATCAATTCAGATTTAGAGTGAAATAGGTCCTCAA 2047192 32 100.0 39 ................................ AAAAACTCTCTCACCTAATGCATTTGCTATTGCTAGCAA 2047263 32 100.0 34 ................................ CGGAAGGGAAGACCCTACTGAAAGCAAGGAAAGA 2047329 32 100.0 32 ................................ TAAAAAACGAGATGCCAACGGGTCGCCCGGAT 2047393 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 100.0 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTACAAGAACAAGGTTGAGCACATTGGTGTGAAAGAATCCATTGATTTGGAAAAGCCATTAATTTTCTAGTGCGGATGTATGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTAAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAATGATATGATCAAAATAGGTTTAATTTTGAATGTTTCTCTCAATTTTCGC # Right flank : TTTTTTGCGTAGACTACGAGGTCACTCCCGCAGGTTGTAAAGGAAGCTCTGGAAACCAGAAACAAAGCAGCCGTGGCAGACGTTACGAGCTTGCCTCCAATATGCTACATCGATGGGTAAAAGACTATGAGTCAGGAAAATGAGGAGTGATTTCGGTAGAGGGGATTTGCCCTCTGGAAACAAAGAAGTTGTCCCAAGAAAATGACCACTTAAAACGGCTGCTAGGGGAAAAAGATCTTGAGATCGCTATTCTGCGTGACCTGGCAAAAAAGAAAAACCCTCACTTGCTGACAAAGTTGAAGTAGCCGAAATCTACATTCAACAGGGATACGCTATAACGCTCGTGCTACGTTTGGTGAAAGTCCCACGTTCGACTTATTATTACATGAAAAATAAAAAAGTCATGAAGAAAACAGTTAGTGAGGGACGTCCAGCGCCAGGGTATTCCTATCAAGCGAATGGAACAAAAGTACCTGATGAACATCAAGAATGGCTCATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2060380-2061293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019655.1 Paenibacillus larvae subsp. larvae strain Eric_III chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 2060380 32 100.0 35 ................................ AAGATCTTTTTGTTTTAATTCTTTTTGTATATCTT 2060447 32 100.0 36 ................................ AAAAAAGTCATACCAATCAATACCTTGTGCAACAAG 2060515 32 100.0 36 ................................ TGGAATTCTATTAGCGAAATCCAGTCAACGAGCATT 2060583 32 100.0 37 ................................ AACTCTACTGCATTGTCCGCGTTAATCTTAATCTCAA 2060652 32 100.0 40 ................................ TCATACCTTTGGCAATCATGTATTCACGGAAGCTTATAGA 2060724 32 100.0 38 ................................ TATTATTTGCGTCAAAGCAGCATGTAACTCTTCGGCCC 2060794 32 100.0 34 ................................ GTCATAAAGGAGCTGATCTAATTGGATGTTTTCG 2060860 32 100.0 38 ................................ ACCAGCTTCCGTATCCCAATCACAGCCATTATAGGCTA 2060930 32 100.0 36 ................................ TTTGATTTTTGTTGAATTGATCATTTTTTATCCCTC 2060998 32 100.0 33 ................................ GAAAAACAAATACAAAAATAATTACACCAAGAA 2061063 32 100.0 34 ................................ AGATTTCGGGACCAGCGATGACAAAACGTATGAA 2061129 32 100.0 37 ................................ CCTTGAAACTCCCAAATTGGTTAATTAAAAAGATCAC 2061198 32 93.8 31 .............................T.G ACCCGATGCCAGAGTACACTGCCCTCCCTGA 2061261 32 78.1 0 ..TA...........A..AGT..A........ | C [2061289] ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAGCGAAAGACAGAGGGTACGAATGTTCATGCGGATTCAACGCTCATCGAGATCGGGTTGGAGCGATCAATATCATGAATCAACCTGTGGCAGATGGTAACAGTCTGTCAGCCTAAGATGCTATATGCACTGTCTTAGGACGGGCTGATGAGACAGCCCTGAACTTGGGGGAACTACGGTTAGCAGAAATGCATGACCGACTACCACCCAAGAATCCCAGTGATACCGAAGGTGTCAGCCGTGGGAGTCTCAAGTTATCAATCGATATAAGGCTAACGGGTGTAAAAGAAGCAATTGATTTGGAAGGTTCATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAAACCGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : TAAAAACTAGAGGATTTAACCACTACCAACTATGCCGTTTCAAGCGATCGGACGGAACGACGCGAAAAGGCATCCTATATTGTTTAGGATGCCTTTTTTTCTCACTTTACCGCATAAGATTCCGCAGCGGTAAAAAGATAATATGCCAGACCTGTCTGCCTTGACTCCATTATATTGCGATGAAAGTCATCATCCAGGAAAAACCGGGCTTGTAAAGCAAAATCTTCAGCGCTTGTGGCATGAACATTCTGATTCAGAAAATTAATATGTTCCCTGATCAAGCCCCTAACGGTTTCGTCGTCAAATTTCATTCCGGCTTTGAGAGCTTTGGCCATTTCCTCCATAAAACGATCCGCCCGGGAAGCCTTTTCGTTCATATCTTTAACATCTATTGGCCTGTCTTCAAGAATATCCAAACCATAAGTCTCTTTCAAATATTCTTTGTGCTCGGCTAAGGCATTTTTCCATTTTTGTTCGCTTTCAAACCCTTTGAACATGCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3740985-3740561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019655.1 Paenibacillus larvae subsp. larvae strain Eric_III chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3740984 30 93.3 36 ......T........G.............. TGTCGGATATCCGTCTGATTTTGATTTAATCGTCAA 3740918 30 96.7 35 ................T............. ACTGGAAATGGGATCTTGCAGATATTCTTTTGCGA 3740853 30 96.7 36 ................T............. CTATGGACCGCCGCCCGGTACTGGTCGGTTTTACTG 3740787 30 100.0 35 .............................. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 3740722 30 100.0 37 .............................. GGCTGTGGGTGAGCCTGTCAATCACATACTTTTTAGC 3740655 30 100.0 35 .............................. TTGCAGAGGAGGATTGTGAAGAAGATGAATCAATG 3740590 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTTGACAGTAACACAAGGTGTATTGAAAC # Left flank : GTTCCCACCCGCGTATGCAGCCCATGTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTTCCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGGCTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGTTAATCTGGTATTGAGCCATTTCATAACACCTCATATATTTAGAATTTTGTGTCCCAACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTTTGGAACCTAGCTTTTTACACAATTATACGGACTCAACTGTGGATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAATATCTCAGGGACCATATCCCTAATACTGGAATGAATTCTGTGTTTGTTATATTCTAACGTTCCATTTCTTGAGTGCGTTGATGAAATAAAACGAGGTAAAAAGTGACTCGTACAAAGAGTTATCAATTTACCTCGTTTTTGGATTGCATATCTATAAGCTTATTCTTGCATTATAAAACCATTTCTCATCATACTTTGGTGTATGAATTCCCTATATTGGATAATAGCAATTATTATTCAGAATAATTCAATTGAGGATGCCTTTGTTCCATGTGAGTACGCCTTTGTTCCATATCCATATGAGGATGCCTTTGTTCCATGTGAGTACACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACAAGGTGTATTGAAAC # Alternate repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //