Array 1 20250-20070 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDWW01000071.1 Haemophilus influenzae strain 39P18H1 N39P18H1_8_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 20249 36 100.0 35 .................................... CGATTTACGACCACCTTTATTTTGAGTTTGACGTA 20178 36 100.0 37 .................................... CTTTACCTTGTAAAGTTAAGTTAATGGTATTTAATTT 20105 36 97.2 0 ................................A... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 99.1 36 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAA # Left flank : TTTGCTTTCTTGATTGATGTTTTCAAATAAGCTAAACAATTTTAGATTGTCTTGAGTTTCACTTTTTTTGCCTAAAACAATGTTTTCAGCTTGGGGTAAAAAAGAAGATATATCGATTGATTGAATAGGAAAAGAAGGCAGAGAGAAATGATGCTTTTCTGCGAGTTGCTTTAAATAATGATTCCATACAGAAAATGCAAGAGAAATTGTGTCTGACATAATTGCTCCATTTAATGAAAACTTGAATGAAGTATAAGCAAATTTTGAAAAATTGTCAGCAAATACAAATTTGTAAAATTTATTTTTATTGTAGCGAGGACTGGTGCATCTGAAAAACTCTGTTAAAATACACCGCACTTTTGACTGATTTTTGAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCTAACTCTTCAGGCATCAGAAAAAGTTGGGAAGTGGCTCGGGGAAGCCTTGCTACACAAGGCTTGAATACCCCGCTGCA # Right flank : TTAAGTTTTTACTTCTATCTTAAAATTATTGCTAACTTTGGCATTCCTAAAAATCTCCGCTAAAATAACCGCACTTTTTCTTATCCTCGAGGAAAACAATATGTCAGATATTCTCAATAACCTCATTCATCTTCTTAAACTTGAAAAAATTGATGATTTAATCTTTCGTGGTGAAAGCCAAGATTTAGGTTTTCGCCAAGTATTTGGTGGGCAAGTTGTGGCTCAAGCGTTATCTGCGGCAATGCAGGTGGCGCCAGAAGATCGTATTTTACATTCTTGTCATGCCTATTTTCTTGCTCCGGGAGACAGCCAATATCCAATTATTTACGATGTGGAAACCTTGCGTGAAGGGCGTAACTTTTCTGCATTACGCGTAAAAGCCATTCAACATAAAAATACCATTTGCCATGTAACTGCTTCTTTCCAAGTGCCGGAAAAAGGTTTTGAACATCAAAATACGATGCCAAATGCTGGCGCGCCTGAAGACTTTACAGATGAAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 33189-33577 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDWW01000071.1 Haemophilus influenzae strain 39P18H1 N39P18H1_8_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 33189 37 100.0 35 ..................................... ATCCAATAGCCCCGTTATGAAGCGCATACTCCACC 33261 37 100.0 34 ..................................... TGATAAATGCCCTTCTCGCTGCACCATGTCTTTG 33332 37 100.0 32 ..................................... GCACAGTTTGATCCAACATGTTGTCTAATTCT 33401 37 100.0 32 ..................................... GCACAGTTTGATCCAACATGTTGTCTAATTCT 33470 37 97.3 34 ....................C................ GCGGTAAAGTAACCGTAAGTGGTGTAACGAATGG 33541 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 98.6 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TTAAATTCTAGGAAGAAAAAATGGCACAATATTTAATTGGTTACGATATTGCCGATCCTAAACGGCTACAACGGATTTATCGTCGAATGACAAATTATGCAACTCCGATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGACTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCCACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTCTGCTAAAATACACCGCACTTTTGGCTGAGTTTTGAAAAAAAGAAGAATGATAAAAATTGTTCAATATTTAATCAAATTAATACCCAACTATTCAAGCATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCTACTGCA # Right flank : TAGATAGAGATTTATGATTAATAAAAATATCGAAAAGCTAAAAGGAGTAATAAAGGGCGTATTGCACGCCCTATTATTTTCAAGAAATGTGCTAAGTTATCGACTAAATTTAGCCGCACTTTTATAAATGTTTCACTCTCCGTTTCACTTCTTCTTGTTTTCCGGCATTAAATGGGCGGGCATCAGGGCTGCCTAGGTAGCCACATACGCGGCGAGTGACAGAAACTTTTGTGCTATCGTGATTGCCACATTTAGGGCAGACAAAACCTTTGCTGGTACATTCAAACTCGCCGGTGAAACCACATTCATAACATTCGTCAATCGGTGTGTTTGTGCCGTAGTAAGGTACGCGATCGTAGCTATAATCCCACACATCTTCCAATGCTTTTAAGTTGTGTTGAATATTTGGATATTCTCCGTAGCAAATAAAACCGCCGCTGGCGAGTGGGGGATATGCCATTTCGAAATCCAGTTTATCGTAAGGATTTACTTTCTTTTCT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //