Array 1 141846-141494 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIS01000003.1 Halopiger salifodinae strain CGMCC 1.12284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 141845 30 100.0 33 .............................. AACAGACAAGAGACGATGGGCGACAACCACAGC 141782 30 100.0 35 .............................. AATGAGCCGACCCCGGTGCGGGCGATCACCAGACC 141717 30 100.0 35 .............................. TGGACGACGTCGATCCCGTCGTCGAACGTCAGCGT 141652 30 100.0 34 .............................. CTCGGGCTCGGCATCTTCGGGTCGGACGAATCGG 141588 30 100.0 35 .............................. ACTTCGTCGCCGCCGTCGGTGACCGAGAGCGAACC 141523 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 6 30 100.0 35 GTTTCAGACGAACCCTTGTAGGGTCGAAGC # Left flank : CAGCGGTGATGGTCGCTAGCTGATCTTCCCGCGGTGAGGAGACGAGCAACTGTCGTTCGTCGCCTTCATCGAGGTCGCCCCAGGGGAACGGATTAGAGAATGTGAATCCGGGCGTTTCCGCTCCATGTTCGTCGTACTCTGTATCACGGAGCGCATCCCAGATCCGTGCTCGAAGACGGCCGTGGTATTCTGGATCGTAGGCAGCATCCATCTCGGCCGTCAAATCGATGATCACTCGCATTTTGTGGCGGATGTTGATAACCTAACGCAGGAAATAAAAATGTAGTGAAACAAGCAAACATCCGAACAGACCTCTCGGCCAGTAGCGTAATTTCATCCACAGGTTCTGTTAGACCACGGATTTCGAATCTATACTGTTCACGCGATCGGCGGTCTTAGTTGTCCGTCAACCCCCCAAGGTTAGCAGGCTATTGAAGGTCGACGGAAATCGATTTGTATGAGTGGACTCTAGGACTGCTCACAGCCGACATTCCGGCATG # Right flank : AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTAGGGTCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 150128-149778 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIS01000003.1 Halopiger salifodinae strain CGMCC 1.12284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 150127 30 100.0 37 .............................. TCCTACGACCCGTACCACGAATACTACACTGAGTTCC 150060 29 93.3 33 ..............-......A........ CGCCACGTCCCTCGAGAACCGTCCGATCAGGCT 149998 30 100.0 33 .............................. GTCTGGTTCGCGCCGGTCGCGTACTACAGCGTG 149935 30 96.7 35 ...................T.......... TACCTTTGCCTCCGGGAGCCACGCGACACGCGCCG 149870 30 90.0 31 ...................A.....CG... AATACCGTGACGTTCGAGGGAACGGTAGAGT CC [149845] 149807 30 80.0 0 ........T...T.T....A....C...A. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 93.3 34 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AGTCAGCGAGGTTCAGGACATGATTGATAGTGGTGGCCACATGCACGAGCATGATCTTGGAACGCTTCAGTTTGGTCCAGATTACGATGGTGAAGTCACTCCAATGGCATGTCTCTATACTGGCGGTGAAGGGAGTGAGGTCTGGGAGAAGTACAACGAAGGCCGGGACGTGACCTATCATGTTGAGCACGGTCAGTGCAGTGTTGATCGTGACTACTGGAATGGCGAATACACCGTAATTCCATCTGAGTGTACGATTGACGCAGTGAAGTATACCCGAGACGCACTCTACAGCCTGTAACGCGTCCGTCCGGCGGCTATTTTTCGTATTGATCTTGAGTGAGTGGTGTGATACTGACCAAGACATCGCTCTTCATGGCAACTTCTCTGGAGAAGGACTCAATCGTCGACCCCCTTGGGTACACAGATTACTCGGGGCCGACGGAAATCGATTTGTGTGAGTAGACTATATTAGCCTTCAGAGCCGGAATTTCGGCATG # Right flank : ATGCTTGATCTGCAGTGCGAGCGCACGTCTCAATTTTGATTCACAAAGGCCATCAAAATTAGCCCCAATTACAGCACCTACATTCTCAGCTAATGTTGGCCGGATCCGGGAGTCTCGATCAGTCGTCTGTGGACTTCCAACTGACCGATAGAACAGTTGTATTCACAGGTCCTCTTTCGCGGCGGCTTCATATGGTAACCGCAGTCACTGAATACCGAAGACTGGATGATAGGGCTGTTCGCGGGCATCCAGAATCAGATAAGTCGAGGCTCCCGCTGTAACCTTGTGTTCCCATGTGCTTGGATCAGTATTGACCTGCGCACCCGGATGCGAAAAAATTTCGTTCACATCAACATCGTCAGTAAGCAAGTTGTCCTGTTCTCGATCAGTGAGGCATGCAACAACATCCTCGTAGCCCTCGATTTCGTTGATCATATGTTCGTTCTCCAACGCGGACATCGAAGCTTTGTCGATGGCAACAGCGAGCTGCTCATCGCCAG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //